Subunit interfaces of oligomeric hyperthermophilic enzymes display enhanced compactness

International Journal of Biological Macromolecules

Volumn 44, Issue 4, 2009, Pages 353-360

  Baldasseroni, Fulvio ^a   Pascarella, Stefano ^a  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

Cavity; Compactness; Hot spot; Hyperthermophiles; Subunit interface

Indexed keywords

OLIGOMER;

ADAPTATION; ARTICLE; ENZYME SUBUNIT; HYPERTHERMOPHILE; PHYSICAL CHEMISTRY; REDUCTION; THERMOSTABILITY;

EID: 62949116944     PISSN: 01418130     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijbiomac.2009.02.002     Document Type: Article

References (32)

1. Vieille C., and Zeikus G.J. Microbiol. Mol. Biol. Rev. 65 (2001) 1-43
2. Jaenicke R., and Böhm G. Curr. Opin. Struct. Biol. 8 (1998) 738-748
3. A. Szilágyi, P. Závodszky, P., Structure, 8 (2000) 493-504.
4. Kumar S., and Nussinov R. Cell. Mol. Life Sci. 58 (2001) 1216-1233
5. Razvi A., and Scholtz J.M. Prot. Sci. 15 (2006) 1569-1568
6. Pack S.P., and Yoo Y.J. Int. J. Biol. Macromol. 35 (2005) 169-174
7. Pack S.P., and Yoo Y.J. J. Biotechnol. 111 (2004) 269-277
8. Vogt G., Woell S., and Argos P. J. Mol. Biol. 269 (1997) 631-643
9. Gianese G., Bossa F., and Pascarella S. Proteins 47 (2002) 236-249
10. Maugini E., Tronelli D., Bossa F., and Pascarella S. Comput. Biol. Chem 33 (2009) 137-148
11. Pattabiraman N., Ward K.B., and Fleming P.J. J. Mol. Recognit. 8 (1995) 334-344
12. Keskin O., Ma B., and Nussinov R. J. Mol. Biol. 345 (2005) 1281-1294
13. Ma B., Elkayam T., Wolfson H., and Nussinov R. Proc. Natl. Acad. Sci. U.S.A. 100 (2003) 5772-5777
14. Li X., Keskin O., Ma B., Nussinov R., and Liang J. J. Mol. Biol. 344 (2004) 781-795
15. Hu Z., Ma B., Wolfson H., and Nussinov R. Proteins 39 (2000) 331-342
16. Keskin O., Gursoy A., Ma B., and Nussinov R. Chem. Rev. 108 (2008) 1225-1244
17. Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., and Bourne P.E. Nucleic Acids Res. 28 (2000) 235-242
18. S.J. Hubbard, J.M. Thornton NACCESS, Computer program, Department of Biochemistry and Molecular Biology, University College, London, 1993.
19. Kleywegt G.J., and Jones T.A. Acta Cryst. D50 (1994) 178-185
20. Shatsky M., Nussinov R., and Wolfson H.J. Proteins 56 (2004) 143-156
21. Shatsky M., Dror O., Schneidman-Duhovny D., Nussinov R., and Wolfson H.J. Nucleic Acids Res. 32 (2004) W503-W507
22. Wilcoxon F. Biometrics 1 (1945) 80-83
23. DeLano W.L. The PyMOL Molecular Graphics System (2008), DeLano Scientific, Palo Alto, California, USA
24. Berezovsky I.N., and Shakhnovich E.I. Proc. Natl. Acad. Sci. U.S.A. 102 (2005) 12742-12747
25. DeDecker B.S., O'Brien R., Fleming P.J., Geiger J.H., Jackson S.P., and Sigler P.B. J. Mol. Biol. 264 (1996) 1072-1084
26. Russell R.J., Ferguson J.M., Hough D.W., Danson M.J., and Taylor G.L. Biochemistry 36 (1997) 9983-9994
27. Glyakina A.V., Garbuzynskiy S.O., Lobanov M.Y., and Galzitskaya O.V. Bioinformatics 23 (2007) 2231-2238
28. Robinson-Rechavi M., Alibés A., and Godzik A. J. Mol. Biol. 356 (2006) 547-557
29. Karshikoff A., and Ladenstein R. Protein Eng. 10 (1998) 867-872
30. Xu D., Tsai C.J., and Nussinov R. Prot. Sci. 7 (1998) 533-544
31. Korkegian A., Black M.E., Baker D., and Stoddard B.L. Science 308 (2005) 857-860
32. Gabellieri E., Balestreri E., Galli A., and Cioni P. Biophys. J. 95 (2008) 771-781