Detection of blood group genes using multiplex SNaPshot method

Transfusion

Volumn 49, Issue 4, 2009, Pages 740-749

  Palacajornsuk, Poonsub ^a   Halter, Christine ^a   Isakova, Victoria ^a   Tarnawski, Michal ^a   Farmar, James ^a   Reid, Marion E ^a   Chaudhuri, Asok ^a  

^a NEW YORK BLOOD CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BLOOD GROUP ANTIGEN; DNA POLYMERASE;

ARTICLE; BLOOD GROUP; BLOOD SAMPLING; CAPILLARY ELECTROPHORESIS; COST UTILITY ANALYSIS; DIAGNOSTIC ACCURACY; DNA DETERMINATION; GENE AMPLIFICATION; GENETIC ANALYSIS; GENOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; HUMAN; HUMAN CELL; MOLECULAR PROBE; MULTIPLEX POLYMERASE CHAIN REACTION; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PREDICTION; REPRODUCIBILITY; SINGLE NUCLEOTIDE POLYMORPHISM; TURNAROUND TIME;

BASE SEQUENCE; BLOOD GROUP ANTIGENS; COST-BENEFIT ANALYSIS; DNA MUTATIONAL ANALYSIS; HISTOCOMPATIBILITY TESTING; HUMANS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; TIME FACTORS;

EID: 62949089195     PISSN: 00411132     EISSN: 15372995     Source Type: Journal    
DOI: 10.1111/j.1537-2995.2008.02053.x     Document Type: Article

References (18)

1. Reid ME, Mohandas N. Red blood cell blood group antigens: structure and function. Semin Hematol 2004 41 : 93 117.
2. Reid ME. Applications of DNA-based assays in blood group antigen and antibody identification. Transfusion 2003 43 : 1748 57.
3. Hashmi G, Shariff T, Seul M, Vissavajjhala P, Hue-Roye K, Charles-Pierre D, Lomas-Francis C, Chaudhuri A, Reid ME. A flexible array format for large-scale, rapid blood group DNA typing. Transfusion 2005 45 : 680 8.
4. Ben-Avi L, Durst R, Shpitzen S, Leitersdorf E, Meiner V. Aplipoprotein E genotyping: accurate, simple, high throughput method using ABI Prism SNaPshot™ multiplex system. J Alzheimers Dis 2004 6 : 497 501.
5. Brion M. Y chromosome SNP analysis using the single-base extension: a hierarchical multiplex design. Methods Mol Biol 2005 297 : 229 42.
6. Bouakaze C, Keyser C, Amory S, Crubezy E, Ludes B. First successful assay of Y-SNP typing by SNaPshot minisequencing on ancient DNA. Int J Legal Med 2007 121 : 493 9.
7. Pati N, Schowinsky V, Kokanovic O, Magnuson V, Ghosh S. A comparison between SNaPshot, pyrosequencing, and biplex invader SNP genotyping methods: accuracy, cost, and throughput. J Biochem Biophys Methods 2004 60 : 1 12.
8. Chaudhuri A, Polyakova J, Zbrzezna V, Pogo O. The coding sequence of Duffy blood group gene in humans and simians: restriction fragment length polymorphism, antibody and malarial parasite specificities, and expression in nonerythroid tissues in Duffy-negative individuals. Blood 1995 85 : 615 21.
9. Reid ME, Lomas-Francis C. Blood Group Antigen FactsBook. 2nd ed. San Diego (CA) : Academic Press 2004.
10. Gubin AN, Njoroge JM, Wojda U, Pack SD, Rios M, Reid ME, Miller JL. Identification of the Dombrock blood group glycoprotein as a polymorphic member of the ADP-ribosyltransferase gene family. Blood 2000 96 : 2621 7.
11. Rios M, Hue-Roye K, Øyen R, Miller J, Reid ME. Insights into the Holley-negative and Joseph-negative phenotypes. Transfusion 2002 42 : 52 8.
12. Tournamille C, Colin Y, Cartron JP, Le Van Kim C. Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals. Nat Genet 1995 10 : 224 8.
13. Tournamille C, Le Van Kim C, Gane P, Le Pennec PY, Roubinet F, Babinet J, Cartron JP, Colin Y. Arg89Cys substitution results in very low membrane expression of the Duffy antigen/receptor for chemokines in Fyx individuals (erratum in 95:2753). Blood 1998 92 : 2147 56.
14. Standards Committee of American Association of Blood Banks. Standards for blood banks and transfusion services. 24th ed. Bethesda : American Association of Blood Banks 2006.
15. Hashmi G, Shariff T, Zhang Y, Cristobal J, Chau C, Seul M, Vissavajjhala P, Baldwin C, Hue-Roye K, Charles-Pierre D, Lomas-Francis C, Reid ME. Determination of 24 minor red blood cell antigens for more than 2000 blood donors by high-throughput DNA analysis. Transfusion 2007 47 : 736 47.
16. Bugert P, McBride S, Smith G, Dugrillon A, Kluter H, Ouwehand WH, Metcalfe P. Microarray-based genotyping for blood groups: comparison of gene array and 5′-nuclease assay techniques with human platelet antigen as a model. Transfusion 2005 45 : 654 9.
17. Denomme GA, Van OM. High-throughput multiplex single-nucleotide polymorphism analysis for red cell and platelet antigen genotypes. Transfusion 2005 45 : 660 6.
18. Beiboer SH, Wieringa-Jelsma T, Maaskant-van Wijk PA, van der Schoot CE, van Zwieten R, Roos D, den Dunnen JT, de Haas M. Rapid genotyping of blood group antigens by multiplex polymerase chain reaction and DNA microarray hybridization. Transfusion 2005 45 : 667 79.