메뉴 건너뛰기




Volumn 18, Issue 7, 2009, Pages 1455-1462

Biodiversity in microbial communities: System scale patterns and mechanisms

Author keywords

Biodiversity; Disturbance; Microbial diversity; Richness maintenance

Indexed keywords

RNA 16S;

EID: 62849119084     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04128.x     Document Type: Article
Times cited : (20)

References (57)
  • 1
    • 3242884054 scopus 로고    scopus 로고
    • Fine-scale phylogenetic architecture of a complex bacterial community
    • Acinas SG, Klepac-Ceraj V, Hunt DE et al 2004) Fine-scale phylogenetic architecture of a complex bacterial community. Nature, 430, 551 554.
    • (2004) Nature , vol.430 , pp. 551-554
    • Acinas, S.G.1    Klepac-Ceraj, V.2    Hunt, D.E.3    Al, E.4
  • 2
    • 0016355478 scopus 로고
    • A new look at the statistical model identification
    • Akaike H (1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19, 716 723.
    • (1974) IEEE Transactions on Automatic Control , vol.19 , pp. 716-723
    • Akaike, H.1
  • 3
    • 33644951851 scopus 로고    scopus 로고
    • Importance of species interactions to community heritability: A genetic basis to trophic-level interactions
    • Bailey JK, Wooley SC, Lindroth RL et al 2006) Importance of species interactions to community heritability: a genetic basis to trophic-level interactions. Ecology Letters, 9, 78 85.
    • (2006) Ecology Letters , vol.9 , pp. 78-85
    • Bailey, J.K.1    Wooley, S.C.2    Lindroth, R.L.3    Al, E.4
  • 5
    • 0034700482 scopus 로고    scopus 로고
    • Disturbance and diversity in experimental microcosms
    • Buckling A, Kassen R, Bell G, Rainey PB (2000) Disturbance and diversity in experimental microcosms. Nature, 408, 961 964.
    • (2000) Nature , vol.408 , pp. 961-964
    • Buckling, A.1    Kassen, R.2    Bell, G.3    Rainey, P.B.4
  • 7
  • 8
    • 0344898137 scopus 로고    scopus 로고
    • Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample
    • Chao A, Shen TJ (2003) Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample. Environmental and Ecological Statistics, 10, 429 443.
    • (2003) Environmental and Ecological Statistics , vol.10 , pp. 429-443
    • Chao, A.1    Shen, T.J.2
  • 12
    • 0027950154 scopus 로고
    • Multispecies competition in variable environments
    • Chesson P (1994) Multispecies competition in variable environments. Theoretical Population Biology, 45, 227 276.
    • (1994) Theoretical Population Biology , vol.45 , pp. 227-276
    • Chesson, P.1
  • 14
    • 33846072878 scopus 로고    scopus 로고
    • The ribosomal database project (RDP-II): Introducing myRDP space and quality controlled public data
    • Database issue.
    • Cole JR, Chai B, Farris RJ et al 2007) The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Research, 35, Database issue.
    • (2007) Nucleic Acids Research , vol.35
    • Cole, J.R.1    Chai, B.2    Farris, R.J.3    Al, E.4
  • 15
    • 33747589227 scopus 로고    scopus 로고
    • Plant genotypic diversity predicts community structure and governs an ecosystem process
    • Crutsinger GM, Collins MD, Fordyce JA et al 2006) Plant genotypic diversity predicts community structure and governs an ecosystem process. Science, 313, 966 968.
    • (2006) Science , vol.313 , pp. 966-968
    • Crutsinger, G.M.1    Collins, M.D.2    Fordyce, J.A.3    Al, E.4
  • 16
    • 0025296904 scopus 로고
    • Diversity and origin of Desulfovibrio species: Phylogenetic definition of a family
    • Devereux R, He SH, Doyle CL et al 1990) Diversity and origin of Desulfovibrio species: phylogenetic definition of a family. Journal of Bacteriology, 172, 3609 3619.
    • (1990) Journal of Bacteriology , vol.172 , pp. 3609-3619
    • Devereux, R.1    He, S.H.2    Doyle, C.L.3    Al, E.4
  • 17
    • 41649109613 scopus 로고    scopus 로고
    • Functional metagenomic profiling of nine biomes
    • Dinsdale EA, Edwards RA, Hall D et al 2008) Functional metagenomic profiling of nine biomes. Nature, 452, 629 632.
    • (2008) Nature , vol.452 , pp. 629-632
    • Dinsdale, E.A.1    Edwards, R.A.2    Hall, D.3    Al, E.4
  • 18
    • 0030759023 scopus 로고    scopus 로고
    • Long-term experimental evolution in Escherichia coli. 7. Mechanisms maintaining genetic variability within populations
    • Elena SF, Lenski RE (1997) Long-term experimental evolution in Escherichia coli. 7. Mechanisms maintaining genetic variability within populations. Evolution, 51, 1058 1067.
    • (1997) Evolution , vol.51 , pp. 1058-1067
    • Elena, S.F.1    Lenski, R.E.2
  • 19
    • 0034870192 scopus 로고    scopus 로고
    • Quantifying biodiversity: Procedures and pitfalls in the measurement and comparison of species richness
    • Gotelli N, Colwell RK (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecology Letters, 4, 379 391.
    • (2001) Ecology Letters , vol.4 , pp. 379-391
    • Gotelli, N.1    Colwell, R.K.2
  • 20
    • 33645353062 scopus 로고    scopus 로고
    • Reconciling niche and neutrality: The continuum hypothesis
    • Gravel D, Canham CD, Beaudet M, Messier C (2006) Reconciling niche and neutrality: the continuum hypothesis. Ecology Letters, 9, 399 409.
    • (2006) Ecology Letters , vol.9 , pp. 399-409
    • Gravel, D.1    Canham, C.D.2    Beaudet, M.3    Messier, C.4
  • 22
    • 33845428821 scopus 로고    scopus 로고
    • Genetic polymorphism in heterogeneous environments: The age of genomics
    • Hedrick PW (2006) Genetic polymorphism in heterogeneous environments: the age of genomics. Annual Review of Ecology, Evolution, and Systematics, 37, 67 93.
    • (2006) Annual Review of Ecology, Evolution, and Systematics , vol.37 , pp. 67-93
    • Hedrick, P.W.1
  • 25
    • 0030613870 scopus 로고    scopus 로고
    • Hidden treatments in ecological experiments: Re-evaluating the ecosystem function of biodiversity
    • Huston MA (1997) Hidden treatments in ecological experiments: re-evaluating the ecosystem function of biodiversity. Oecologia, 110, 449 460.
    • (1997) Oecologia , vol.110 , pp. 449-460
    • Huston, M.A.1
  • 26
    • 34447324898 scopus 로고    scopus 로고
    • Stability and diversity of ecosystems
    • Ives AR, Carpenter SR (2007) Stability and diversity of ecosystems. Science, 317, 58 62.
    • (2007) Science , vol.317 , pp. 58-62
    • Ives, A.R.1    Carpenter, S.R.2
  • 27
    • 0037030642 scopus 로고    scopus 로고
    • Biodiversity as a barrier to ecological invasion
    • Kennedy TA, Naeem S, Howe KM et al 2002) Biodiversity as a barrier to ecological invasion. Nature, 417, 636 638.
    • (2002) Nature , vol.417 , pp. 636-638
    • Kennedy, T.A.1    Naeem, S.2    Howe, K.M.3    Al, E.4
  • 28
    • 35748954014 scopus 로고    scopus 로고
    • Prokaryotic taxonomy and phylogeny in the genomic era: Advancements and challenges ahead
    • Konstantinidis KA, Tiedje JM (2007) Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Current Opinions in Microbiology, 10, 504 509.
    • (2007) Current Opinions in Microbiology , vol.10 , pp. 504-509
    • Konstantinidis, K.A.1    Tiedje, J.M.2
  • 29
    • 34548686529 scopus 로고    scopus 로고
    • Mutual feedbacks maintain both genetic and species diversity in a plant community
    • Lankau RA, Strauss SY (2007) Mutual feedbacks maintain both genetic and species diversity in a plant community. Science, 317, 1561 1563.
    • (2007) Science , vol.317 , pp. 1561-1563
    • Lankau, R.A.1    Strauss, S.Y.2
  • 30
    • 0035811475 scopus 로고    scopus 로고
    • Partitioning selection and complementarity in biodiversity experiments
    • Loreau M, Hector A (2001) Partitioning selection and complementarity in biodiversity experiments. Nature, 412, 72 76.
    • (2001) Nature , vol.412 , pp. 72-76
    • Loreau, M.1    Hector, A.2
  • 31
    • 0035955371 scopus 로고    scopus 로고
    • Biodiversity and ecosystem functioning: Current knowledge and future challenges
    • Loreau M, Naeem S, Inchausti P et al 2001) Biodiversity and ecosystem functioning: current knowledge and future challenges. Science, 294, 804 808.
    • (2001) Science , vol.294 , pp. 804-808
    • Loreau, M.1    Naeem, S.2    Inchausti, P.3    Al, E.4
  • 33
    • 0038225705 scopus 로고    scopus 로고
    • Phenotypic diversity influences ecosystem functioning in oak sandhills community
    • Madritch MD, Hunter MD (2002) Phenotypic diversity influences ecosystem functioning in oak sandhills community. Ecology, 83, 2084 2090.
    • (2002) Ecology , vol.83 , pp. 2084-2090
    • Madritch, M.D.1    Hunter, M.D.2
  • 35
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • Martin AP (2002) Phylogenetic approaches for describing and comparing the diversity of microbial communities. Applied and Environmental Microbiology, 68, 3673 3682.
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 37
    • 0034636310 scopus 로고    scopus 로고
    • The diversity-stability debate
    • McCann KS (2000) The diversity-stability debate. Nature, 405, 228 233.
    • (2000) Nature , vol.405 , pp. 228-233
    • McCann, K.S.1
  • 38
    • 0031438048 scopus 로고    scopus 로고
    • Biodiversity enhances ecosystem reliability
    • Naeem S, Li S (1997) Biodiversity enhances ecosystem reliability. Nature, 390, 507 509.
    • (1997) Nature , vol.390 , pp. 507-509
    • Naeem, S.1    Li, S.2
  • 39
    • 0028176445 scopus 로고
    • Limiting similarity in mechanistic and spatial models of plant competition in heterogeneous environments
    • Pacala SW, Tilman D (1993) Limiting similarity in mechanistic and spatial models of plant competition in heterogeneous environments. The American Naturalist, 143, 222 257.
    • (1993) The American Naturalist , vol.143 , pp. 222-257
    • Pacala, S.W.1    Tilman, D.2
  • 40
    • 0034213941 scopus 로고    scopus 로고
    • The emergence and maintenance of diversity: Insights from experimental bacterial populations
    • Rainey PB, Buckling A, Kassen R, Travisano M (2000) The emergence and maintenance of diversity: insights from experimental bacterial populations. Trends in Ecology & Evolution, 15, 243 247.
    • (2000) Trends in Ecology & Evolution , vol.15 , pp. 243-247
    • Rainey, P.B.1    Buckling, A.2    Kassen, R.3    Travisano, M.4
  • 41
    • 0032474853 scopus 로고    scopus 로고
    • Adaptive radiation in a heterogeneous environment
    • Rainey PB, Travisano M (1998) Adaptive radiation in a heterogeneous environment. Nature, 394, 69 72.
    • (1998) Nature , vol.394 , pp. 69-72
    • Rainey, P.B.1    Travisano, M.2
  • 42
    • 33847318761 scopus 로고    scopus 로고
    • Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem
    • Ramette A, Tiedje J (2007) Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proceedings of the National Academy of Sciences, USA, 104, 2761 2766.
    • (2007) Proceedings of the National Academy of Sciences, USA , vol.104 , pp. 2761-2766
    • Ramette, A.1    Tiedje, J.2
  • 45
    • 0028094645 scopus 로고
    • Microbial evolution in a simple unstructured environment - Genetic differentiation in Escherichia coli
    • Rosenzweig RF, Sharp RR, Treves DS, Adams J (1994) Microbial evolution in a simple unstructured environment - genetic differentiation in Escherichia coli. Genetics, 137, 903 917.
    • (1994) Genetics , vol.137 , pp. 903-917
    • Rosenzweig, R.F.1    Sharp, R.R.2    Treves, D.S.3    Adams, J.4
  • 46
    • 0034104460 scopus 로고    scopus 로고
    • Long-term experimental evolution in Escherichia coli. 8. Dynamics of a balanced polymorphism
    • Rozen DE, Lenski RE (2000) Long-term experimental evolution in Escherichia coli. 8. Dynamics of a balanced polymorphism. American Naturalist, 155, 24 35.
    • (2000) American Naturalist , vol.155 , pp. 24-35
    • Rozen, D.E.1    Lenski, R.E.2
  • 47
    • 0033179426 scopus 로고    scopus 로고
    • Ecosystem effects of biodiversity: A classification of hypotheses and exploration of empirical results
    • Schlapfer F, Schmid B (1999) Ecosystem effects of biodiversity: a classification of hypotheses and exploration of empirical results. Ecological Applications, 9, 893 912.
    • (1999) Ecological Applications , vol.9 , pp. 893-912
    • Schlapfer, F.1    Schmid, B.2
  • 48
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology, 71, 1501 1506.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 49
    • 1342269509 scopus 로고    scopus 로고
    • A genetic component to ecosystem processes: The role of genetic variation, and condensed tannins on soil nitrogen dynamics
    • Schweitzer JA, Bailey JK, Hart SC, Woolbright SA, Whitham TG (2004) A genetic component to ecosystem processes: the role of genetic variation, and condensed tannins on soil nitrogen dynamics. Ecology Letters, 7, 127 134.
    • (2004) Ecology Letters , vol.7 , pp. 127-134
    • Schweitzer, J.A.1    Bailey, J.K.2    Hart, S.C.3    Woolbright, S.A.4    Whitham, T.G.5
  • 51
    • 3343017177 scopus 로고    scopus 로고
    • Niche tradeoffs, neutrality, and community structure: A stochastic theory of resource competition, invasion, and community assembly
    • Tilman D (2004) Niche tradeoffs, neutrality, and community structure: a stochastic theory of resource competition, invasion, and community assembly. Proceedings of the National Academy of Sciences, USA, 101, 10854 10861.
    • (2004) Proceedings of the National Academy of Sciences, USA , vol.101 , pp. 10854-10861
    • Tilman, D.1
  • 52
  • 53
    • 0035027132 scopus 로고    scopus 로고
    • Potential ecosystem level effects of genetic variation among populations of Metrosideros polymorpha from a soil fertility gradient in Hawaii
    • Treseder KK, Vitousek PM (2001) Potential ecosystem level effects of genetic variation among populations of Metrosideros polymorpha from a soil fertility gradient in Hawaii. Oecologia, 126, 266 275.
    • (2001) Oecologia , vol.126 , pp. 266-275
    • Treseder, K.K.1    Vitousek, P.M.2
  • 54
    • 0001997656 scopus 로고
    • Niche overlap and invasion of competitors in random environments 1. Models without demographic stochasticity
    • Turelli M (1981) Niche overlap and invasion of competitors in random environments 1. Models without demographic stochasticity. Theoretical Population Biology, 20, 1 56.
    • (1981) Theoretical Population Biology , vol.20 , pp. 1-56
    • Turelli, M.1
  • 55
    • 0030427959 scopus 로고    scopus 로고
    • Tests of ecological mechanisms promoting the stable coexistence of two bacterial genotypes
    • Turner PE, Souza V, Lenski RE (1996) Tests of ecological mechanisms promoting the stable coexistence of two bacterial genotypes. Ecology, 77, 2119 2129.
    • (1996) Ecology , vol.77 , pp. 2119-2129
    • Turner, P.E.1    Souza, V.2    Lenski, R.E.3
  • 56
    • 20744439713 scopus 로고    scopus 로고
    • Connections between species diversity and genetic diversity
    • Vellend M, Geber MA (2005) Connections between species diversity and genetic diversity. Ecology Letters, 8, 767 781.
    • (2005) Ecology Letters , vol.8 , pp. 767-781
    • Vellend, M.1    Geber, M.A.2
  • 57
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolated endemic populations of hyperthermophilic Archaea
    • Whittaker RJ, Grogan DW, Taylor JW (2003) Geographic barriers isolated endemic populations of hyperthermophilic Archaea. Science, 301, 976 978.
    • (2003) Science , vol.301 , pp. 976-978
    • Whittaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.