Discordant patterns of evolutionary differentiation in two Neotropical treefrogs

Molecular Ecology

Volumn 18, Issue 7, 2009, Pages 1375-1395

  Robertson, Jeanne M ^a,b   Duryea, M Catherine ^a,c   Zamudio, Kelly R ^a  

^a Department of Obstetrics Gynecology   (United States)

^b UNIVERSITY OF IDAHO   (United States)

^c Dartmouth College   (United States)

Author keywords

Agalychnis; Biogeography; Colour pattern polymorphisms; Dendropsophus; Microsatellites; Population genetics

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; COMPARATIVE STUDY; COSTA RICA; DNA SEQUENCE; FROGS AND TOADS; GENE FLOW; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; PANAMA; PHENOTYPE; PHYLOGENY; PIGMENTATION; POPULATION GENETICS; SPECIES DIFFERENCE;

ANIMALS; ANURA; COSTA RICA; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENE FLOW; GENETIC MARKERS; GENETICS, POPULATION; GEOGRAPHY; MICROSATELLITE REPEATS; PANAMA; PHENOTYPE; PHYLOGENY; PIGMENTATION; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

AGALYCHNIS; AGALYCHNIS CALLIDRYAS; ANURA; HYLA; LEPTODACTYLIDAE;

EID: 62849118512     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04126.x     Document Type: Article

References (98)

1. Avise JC (1986) Mitochondrial DNA and the evolutionary genetics of higher animals. Philosophical Transactions of the Royal Society B: Biological Sciences, 312, 325 342.
2. Avise JC (1989) Gene trees and organismal histories - a phylogenetic approach to population biology. Evolution, 43, 1192 1208.
3. Avise JC, Arnold J, Ball RM et al 1987) Intraspecific phylogeography - the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology and Systematics, 18, 489 522.
4. Babik W, Branicki W, Crnobrnja-Isailovic J et al 2005) Phylogeography of two European newt species - discordance between mtDNA and morphology. Molecular Ecology, 14, 2475 2491.
5. Barber PH, Erdmann MV, Palumbi SR (2006) Comparative phylogeography of three codistributed stomatopods: origins and timing of regional lineage diversification in the coral triangle. Evolution, 60, 1825 1839.
6. Bermingham E, Lessios HA (1993) Rate variation of protein and mitochondrial DNA evolution as revealed by sea urchins separated by the Isthmus of Panama. Proceedings of the National Academy of Sciences, USA, 90, 2734 2738.
7. Boul KE, Funk WC, Darst CR, Cannatella DC, Ryan MJ (2007) Sexual selection drives speciation in an Amazonian frog. Proceedings of the Royal Society B: Biological Sciences, 274, 399 406.
8. Campbell J (1999) Distribution patterns of amphibians in Middle America. In : Patterns of Distribution of Amphibians (ed. Duellman W). The John Hopkins University Press, Baltimore, Maryland.
9. Campbell JA, Frost DR (1993) Anguid lizards of the genus Abronia - revisionary notes, descriptions of 4 new species, a phylogenetic analysis, and key. Bulletin of the American Museum of Natural History, 1 121.
10. Castellano S, Balletto E (2002) Is the partial Mantel test inadequate? Evolution, 56, 1871 1873.
11. Coates AC, Obando JA (1996) The geological evaluation of the Central American Isthmus. In : Evolution and Environment in Tropical America (eds Jackson BC, Budd AF, Coates AG). University of Chicago Press, Chicago.
12. Cott HB (1940) Adaptive Coloration in Animals. Metheun and Co. Ltd, London.
13. Crandall ED, Frey MA, Grosberg RK, Barber PH (2008) Contrasting demographic history and phylogeographical patterns in two Indo-Pacific gastropods. Molecular Ecology, 17, 611 626.
14. Crawford AJ (2003) Huge populations and old species of Costa Rican and Panamanian dirt frogs inferred from mitochondrial and nuclear gene sequences. Molecular Ecology, 12, 2525 2540.
15. Crawford AJ, Bermingham E, Polania C (2007) The role of tropical dry forest as a long-term barrier to dispersal: a comparative phylogeographical analysis of dry forest tolerant and intolerant frogs. Molecular Ecology, 16, 4789 4807.
16. Crews SC, Hedin M (2006) Studies of morphological and molecular phylogenetic divergence in spiders (Araneae: Homalonychus) from the American southwest, including divergence along the Baja California Peninsula. Molecular Phylogenetics and Evolution, 38, 470 487.
17. Demastes JW, Hafner MS, Hafner DJ (1996) Phylogeographic variation in two Central American pocket gophers (Orthogeomys). Journal of Mammalogy, 77, 917 927.
18. Duellman W (1970) The Hylid Frogs of Middle America. University of Kansas, Lawrence, Kansas.
19. Duellman WE (2001) The Hylid Frogs of Middle America. Society for the Study of Amphibians and Reptiles, Ithaca, New York.
20. Endler JA (1973) Gene flow and population differentiation. Science, 179, 243 250.
21. Endler JA (1980) Natural selection on color patterns in Poecilia reticulata. Evolution, 34, 76 91.
22. Endler JA (1982) Convergent and divergent effects of natural selection on color patterns in 2 fish faunas. Evolution, 36, 178 188.
23. Endler JA (1983) Natural and sexual selection on color patterns in poeciliid fishes. Environmental Biology of Fishes, 9, 173 190.
24. Endler JA (1990) On the measurement and classification of color in studies of animal color patterns. Biological Journal of the Linnean Society, 41, 315 352.
25. Endler JA, Mielke PW (2005) Comparing entire colour patterns as birds see them. Biological Journal of the Linnean Society, 86, 405 431.
26. Erspamer V, Melchiorri P, Erspamer GF, Montecucchi PC, Decastiglione R (1985) Phyllomedusa skin - a huge factory and store house of a variety of active peptides. Peptides, 6, 7 12.
27. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611 2620.
28. Funk WC, Blouin MS, Corn PS et al 2005a) Population structure of Columbia spotted frogs (Rana luteiventris) is strongly affected by the landscape. Molecular Ecology, 14, 483 496.
29. Funk WC, Greene AE, Corn PS, Allendorf FW (2005b) High dispersal in a frog species suggests that it is vulnerable to habitat fragmentation. Biology Letters, 1, 13 16.
30. García-París M, Good DA, Parra-Olea G, Wake DB (2000) Biodiversity of Costa Rican salamanders: implications of high levels of genetic differentiation and phylogeographic structure for species formation. Proceedings of the National Academy of Sciences, USA, 97, 1640 1647.
31. Gatesy J, DeSalle R, Wheeler W (1993) Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Molecular Phylogenetics and Evolution, 2, 152 157.
32. Gray RH (1983) Seasonal, annual and geographic variation in color morph frequencies of the cricket frog, Acris crepitans, in Illinois. Copeia, 300 311.
33. Gray SM, McKinnon JS (2007) Linking color polymorphism maintenance and speciation. Trends in Ecology & Evolution, 22, 71 79.
34. Grinnell J (1914) Barriers to distribution as regards birds and mammals. The American Naturalist, 48, 248 254.
35. Grinnell J (1924) Geography and evolution. Ecology, 5, 225 229.
36. Hagemann S, Pröhl H (2007) Mitochondrial paraphyly in a polymorphic poison frog species (Dendrobatidae; D. pumilio). Molecular Phylogenetics and Evolution, 45, 740 747.
37. Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTechniques, 27, 500 502.
38. Harmon LJ, Gibson R (2006) Multivariate phenotypic evolution among island and mainland populations of the ornate day gecko, Phelsuma ornata. Evolution, 60, 2622 2632.
39. Harmon LJ, Kolbe JJ, Cheverud JM, Losos JB (2005) Convergence and the multidimensional niche. Evolution, 59, 409 421.
40. Harper GR, Pfennig DW (2008) Selection overrides gene flow to break down maladaptive mimicry. Nature, 451, 1103 1106.
41. Hoekstra HE, Krenz JG, Nachman MW (2005) Local adaptation in the rock pocket mouse (Chaetodipus intermedius): natural selection and phylogenetic history of populations. Heredity, 94, 217 228.
42. Hoffman EA, Blouin MS (2000) A review of colour and pattern polymorphisms in anurans. Biological Journal of the Linnean Society, 70, 633 665.
43. Hoffman EA, Schueler FW, Jones AG, Blouin MS (2006) An analysis of selection on a colour polymorphism in the northern leopard frog. Molecular Ecology, 15, 2627 2641.
44. Holdridge LR (1947) Determination of world plant formations from simple climatic data. Science, 105, 367 368.
45. Irwin DE (2002) Phylogeographic breaks without geographic barriers to gene flow. Evolution, 56, 2383 2394.
46. Jakobsson M, Rosenberg NA (2007) clumpp: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801 1806.
47. Jordan MA, Snell HL, Snell HM, Jordan WC (2005) Phenotypic divergence despite high levels of gene flow in Galapagos lava lizards (Microlophus albemarlensis). Molecular Ecology, 14, 859 867.
48. King RB, Lawson R (1995) Color pattern variation in Lake Erie water snakes - the role of gene flow. Evolution, 49, 885 896.
49. Knowles LL (2004) The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology, 17, 1 10.
50. Kohlmann B, Wilkinson J, Lulla K (2002) Costa Rica desde el espacio/Costa Rica from Space, 1st edn. Fundacíon Neotrópica, San José.
51. Lemmon EM, Lemmon AR, Collins JT, Lee-Yaw JA, Cannatella DC (2007) Phylogeny-based delimitation of species boundaries and contact zones in the trilling chorus frogs (Pseudacris). Molecular Phylogenetics and Evolution, 44, 1068 1082.
52. Lenormand T (2002) Gene flow and the limits to natural selection. Trends in Ecology & Evolution, 17, 183 189.
53. Manly BFJ (1986) Randomization and regression methods for testing for associations with geographical, environmental and biological distances between populations. Researches on Population Ecology, 28, 201 218.
54. McNeilly T, Antonovi J (1968) Evolution in closely adjacent plant populations.4. barriers to gene flow. Heredity, 23, 205 218.
55. Meirmans PG (2006) Using the amova framework to estimate a standardized genetic differentiation measure. Evolution, 60, 2399 2402.
56. Mignogna G, Severini C, Erspamer GF et al 1997) Tachykinins and other biologically active peptides from the skin of the Costa Rican phyllomedusid frog Agalychnis callidryas. Peptides, 18, 367 374.
57. Morgan KK, Hicks J, Spitze K et al 2001) Patterns of genetic architecture for life-history traits and molecular markers in a subdivided species. Evolution, 55, 1753 1761.
58. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
59. Ohmer ME, Robertson JM, Zamudio KR (in press) Discordance in body size, color pattern, and advertisement call across genetically distinct regions of a Neotropical anuran (Dendropsophus ebraccatus). Biological Journal of the Linnean Society.
60. Posada D, Crandall KA (1998) ModelTest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
61. Price TD (2006) Phenotypic plasticity, sexual selection and the evolution of colour patterns. Journal of Experimental Biology, 209, 2368 2376.
62. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
63. r Core Development (2007) r: A language and environment for statistical computing. r Foundation for Statistical Computing, Vienna.
64. Rand AS, Williams EE (1970) An estimation of redundancy and information content of Anole dewlaps. The American Naturalist, 104, 99 103.
65. Raufaste N, Rousset F (2001) Are partial mantel tests adequate? Evolution, 55, 1703 1705.
66. Raufaste N, Orth A, Belkhir K et al 2005) Inferences of selection and migration in the Danish house mouse hybrid zone. Biological Journal of the Linnean Society, 84, 593 616.
67. Ritchie MG, Hamill RM, Graves JA et al 2007) Sex and differentiation: population genetic divergence and sexual dimorphism in Mexican goodeid fish. Journal of Evolutionary Biology, 20, 2048 2055.
68. Roberts JL, Brown JL, Schulte R, Arizabal W, Summers K (2007) Rapid diversification of colouration among populations of a poison frog isolated on sky peninsulas in the central cordilleras of Peru. Journal of Biogeography, 34, 417 426.
69. Robertson JM (2008) Genetic and phenotypic diversity patterns in two polymorphic, neotropical anurans: biogeography, gene flow and selection. PhD thesis, Cornell University, Ithaca, New York.
70. Robertson JM, Robertson AD (2008) Spatial and temporal patterns of phenotypic variation in a Neotropical frog. Journal of Biogeography, 35, 830 843.
71. Rocha LA (2004) Mitochondrial DNA and color pattern variation in three western Atlantic Halichoeres (Labridae), with the revalidation of two species. Copeia, 770 782.
72. Rosenblum EB (2006) Convergent evolution and divergent selection: lizards at the White Sands ecotone. The American Naturalist, 167, 1 15.
73. Rosenblum EB, Hickerson MJ, Moritz C (2007) A multilocus perspective on colonization accompanied by selection and gene flow. Evolution, 61, 2971 2985.
74. Rousset F (1997) Genetic differentiation and estimation of gene flow from f-statistics under isolation by distance. Genetics, 145, 1219 1228.
75. Rudh A, Rogell B, Hoglund J (2007) Non-gradual variation in colour morphs of the strawberry poison frog Dendrobates pumilio: genetic and geographical isolation suggest a role for selection in maintaining polymorphism. Molecular Ecology, 16, 4284 4294.
76. Saint-Laurent R, Legault M, Bernatchez L (2003) Divergent selection maintains adaptive differentiation despite high gene flow between sympatric rainbow smelt ecotypes (Osmerus mordax Mitchill). Molecular Ecology, 12, 315 330.
77. Sandoval CP (1994) The effects of the relative geographic scales of gene flow and selection on morph frequencies in the walking-stick Timema christinae. Evolution, 48, 1866 1879.
78. Savage JM (2002) The Amphibians and Reptiles of Costa Rica: A Herpetofauna Between Two Continents, Between Two Seas. The University of Chicago Press, Chicago.
79. Savage JM, Heyer WR (1967) Variation and distribution in the tree frog genus. Phyllomedusa Beitraege Zur Neotropischen Fauna, 5, 111 131.
80. Sazima I (1974) Experimental predation on the leaf-frog Phyllomedusa rohdei by the water snake Liophis miliaris. Journal of Herpetology, 8, 376 378.
81. Schneider S, Roessli D, Excoffier L (2000) Arlequin. A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva.
82. Siddiqi A, Cronin TW, Loew ER, Vorobyev M, Summers K (2004) Interspecific and intraspecific views of color signals in the strawberry poison frog Dendrobates pumilio. Journal of Experimental Biology, 207, 2471 2485.
83. Slatkin M (1985) Gene flow in natural populations. Annual Review of Ecology and Systematics, 16, 393 430.
84. Stewart MM (1974) Parallel pattern polymorphism in genus Phrynobatrachus (Amphibia-Ranidae). Copeia, 823 832.
85. Summers K, Cronin TW, Kennedy T (2003) Variation in spectral reflectance among populations of Dendrobates pumilio, the strawberry poison frog, in the Bocas del Toro Archipelago, Panama. Journal of Biogeography, 30, 35 53.
86. Swafford D (2001) paup*. Phylogenetic analysis using parsimony (* and other methods). Sinauer Associates, Sunderland, Massachusetts.
87. Thompson JD, Higgins DG, Gibson TJ (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673 4680.
88. Thorpe RS, Richard M (2001) Evidence that ultraviolet markings are associated with patterns of molecular gene flow. Proceedings of the National Academy of Sciences, USA, 98, 3929 3934.
89. Warburg MR (1965) Evolutionary significance of ecological niche. Oikos, 16, 205 213.
90. Weigt LA, Crawford AJ, Rand AS, Ryan MJ (2005) Biogeography of the tungara frog, Physalaemus pustulosus: a molecular perspective. Molecular Ecology, 14, 3857 3876.
91. Weir BS, Cockerham CC (1984) Estimating f-Statistics for the Analysis of Population-Structure. Evolution, 38, 1358 1370.
92. West-Eberhard MJ (1983) Sexual selection, social competition, and speciation. Quarterly Review of Biology, 58, 28.
93. Wiens JJ, Fetzner JW, Parkinson CL, Reeder TW (2005) Hylid frog phylogeny and sampling strategies for speciose clades. Systematic Biology, 54, 719 748.
94. Wollenberg KC, Lotters S, Mora-Ferrer C, Veith M (2008) Disentangling composite colour patterns in a poison frog species. Biological Journal of the Linnean Society, 93, 433 444.
95. Wright S (1937) The distribution of gene frequencies in populations. Proceedings of the National Academy of Sciences, USA, 23, 307 320.
96. Zamudio KR, Greene HW (1997) Phylogeography of the bushmaster (Lachesis muta: Viperidae): implications for Neotropical biogeography, systematics, and conservation. Biological Journal of the Linnean Society, 62, 421 442.
97. Zeh JA, Zeh DW, Bonilla MM (2003) Phylogeography of the harlequin beetle-riding pseudoscorpion and the rise of the Isthmus of Panama. Molecular Ecology, 12, 2759 2769.
98. Zeisset I, Beebee T (2008) Amphibian phylogeography: a model for understanding historical aspects of species distributions. Heredity, 101, 109 119.