Use of a universal virus detection assay to identify human metapneumovirus in a hematopoietic stem cell transplant recipient with pneumonia of unknown origin

Journal of Clinical Virology

Volumn 44, Issue 4, 2009, Pages 337-339

  Uhlenhaut, Christine ^a   Cohen, Jeffrey I ^b   Fedorko, Daniel ^c   Nanda, Santosh ^a   Krause, Philip R ^a  

^a CENTER FOR BIOLOGICS EVALUATION AND RESEARCH   (United States)

^b NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

Immunocompromised host; Virus detection; Virus discovery; Virus disease diagnosis; Virus disease etiology

Indexed keywords

OLIGONUCLEOTIDE;

ARTICLE; CASE REPORT; HEMATOPOIETIC STEM CELL TRANSPLANTATION; HUMAN; HUMAN METAPNEUMOVIRUS; IDIOPATHIC DISEASE; IMMUNE DEFICIENCY; LUNG LAVAGE; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIRUS DETECTION; VIRUS DIAGNOSIS; VIRUS GENOME; VIRUS PNEUMONIA;

BASE SEQUENCE; BRONCHOALVEOLAR LAVAGE FLUID; CLONING, MOLECULAR; DNA PRIMERS; HEMATOPOIETIC STEM CELL TRANSPLANTATION; HUMANS; IMMUNOCOMPROMISED HOST; METAPNEUMOVIRUS; MOLECULAR SEQUENCE DATA; PARAMYXOVIRIDAE INFECTIONS; PNEUMONIA; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

EID: 62749165237     PISSN: 13866532     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jcv.2009.01.011     Document Type: Article

References (15)

1. Nanda S., Jayan G., Voulgaropoulou F., Sierra-Honigmann A.M., Uhlenhaut C., McWatters B.J., et al. Universal virus detection by degenerate-oligonucleotide primed polymerase chain reaction of purified viral nucleic acids. J Virol Methods 152 (2008) 18-24
2. Allander T., Emerson S.U., Engle R.E., Purcell R.H., and Bukh J. A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc Natl Acad Sci U S A 98 (2001) 11609-11614
3. Alvarez R., Harrod K.S., Shieh W.J., Zaki S., and Tripp R.A. Human metapneumovirus persists in BALB/c mice despite the presence of neutralizing antibodies. J Virol 78 (2004) 14003-14011
4. Chiu C.Y., Alizadeh A.A., Rouskin S., Merker J.D., Yeh E., Yagi S., et al. Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. J Clin Microbiol 45 (2007) 2340-2343
5. Hopkins M.J., Redmond C., Shaw J.M., Hart I.J., Hart C.A., Smyth R.L., et al. Detection and characterisation of human metapneumovirus from children with acute respiratory symptoms in north-west England, UK. J Clin Virol 42 (2008) 273-279
6. Taylor L.H., Latham S.M., and Woolhouse M.E. Risk factors for human disease emergence. Philos Trans R Soc Lond B Biol Sci 356 (2001) 983-989
7. Corne J.M., Green S., Sanderson G., Caul E.O., and Johnston S.L. A multiplex RT-PCR for the detection of parainfluenza viruses 1-3 in clinical samples. J Virol Methods 82 (1999) 9-18
8. Sampath R., Hofstadler S.A., Blyn L.B., Eshoo M.W., Hall T.A., Massire C., et al. Rapid identification of emerging pathogens: coronavirus. Emerg Infect Dis 11 (2005) 373-379
9. van der Hoek L., Pyrc K., Jebbink M.F., Vermeulen-Oost W., Berkhout R.J., Wolthers K.C., et al. Identification of a new human coronavirus. Nat Med 10 (2004) 368-373
10. VanDevanter D.R., Warrener P., Bennett L., Schultz E.R., Coulter S., Garber R.L., et al. Detection and analysis of diverse herpesviral species by consensus primer PCR. J Clin Microbiol 34 (1996) 1666-1671
11. Briese T., Jia X.Y., Huang C., Grady L.J., and Lipkin W.I. Identification of a Kunjin/West Nile-like flavivirus in brains of patients with New York encephalitis. Lancet 354 (1999) 1261-1262
12. Wang D., Coscoy L., Zylberberg M., Avila P.C., Boushey H.A., Ganem D., et al. Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci U S A 99 (2002) 15687-15692
13. Palacios G., Druce J., Du L., Tran T., Birch C., Briese T., et al. A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases. N Engl J Med 358 (2008) 991-998
14. Cox-Foster D.L., Conlan S., Holmes E.C., Palacios G., Evans J.D., Moran N.A., et al. A metagenomic survey of microbes in Honey Bee colony collapse disorder. Science 318 (2007) 283-287
15. Feng H., Shuda M., Chang Y., and Moore P.S. Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319 (2008) 1096-1100