Use of mitochondrial and nuclear genes to infer the origin of two endemic pigeons from the Canary Islands

Journal of Ornithology

Volumn 150, Issue 2, 2009, Pages 357-367

  Gonzalez, Javier ^a   Delgado Castro, Guillermo ^b   Garcia del Rey, Eduardo ^c   Berger, Carola ^a   Wink, Michael ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

^b Museo de Ciencias Naturales   (Spain)

^c UNIVERSIDAD DE LA LAGUNA   (Spain)

Author keywords

Canary Islands; Columba; Mitochondrial DNA; Phylogeny; Fibrinogen intron 7

Indexed keywords

BIRD; ENDEMIC SPECIES; GENE FLOW; GENETIC ANALYSIS; MIOCENE; MITOCHONDRIAL DNA; PARSIMONY ANALYSIS; PHYLOGENY;

ASIA; ATLANTIC ISLANDS; ATLANTIC OCEAN; CANARY ISLANDS; EURASIA; EUROPE; MACARONESIA; SOUTHERN EUROPE; SPAIN;

COLUMBA; COLUMBA BOLLII; COLUMBA JUNONIAE; COLUMBA PALUMBUS;

EID: 62649158250     PISSN: 21937192     EISSN: 21937206     Source Type: Journal    
DOI: 10.1007/s10336-008-0360-4     Document Type: Article

References (67)

1. Alcover JA, Florit X (1989) The birds from the archaeological site of La Aldea, Gran Canaria. Bull Inst Cat Hist Nat 56:47-55
2. Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F (2004) Parallel metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20:407-415
3. Arévalo JR, Delgado JD, Fernández-Palacios JM (2007) Variation in fleshy fruit fall composition in an island laurel forest of the Canary Islands. Acta Oecol 32:152-160
4. Broders O, Osborne T, Wink M (2003) A mtDNA phylogeny of bustards (family Otididae) based on nucleotide sequences of the cytochrome b -gene. J Ornithol 144:176-185
5. Carracedo JC, Pérez FJ, Ancochea E, Meco J, Hernán F, Cubas CR, Casillas R, Rodríguez E, Ahijado A (2002) Cenozoic volcanism II: The Canary Islands. In: Gibbons W, Moreno T (eds) The geology of Spain. The Geological Society of London, pp 439-472
6. Castillo C, López M, Martín M, Rando JC (1996) La paleontología de vertebrados en Canarias. Rev Esp Paleontol no Extraordinario, pp 237-247
7. Cerling TE, Harris JM, MacFadden BJ, Leakey MG, Quade J, Eisenmann V, Ehleringer JR (1997) Global vegetation change through the Miocene/ Pliocene boundary. Nature 389:153-158
8. Clarke T (2006) Birds of the Atlantic islands. Christopher Helm, London
9. Clayton DH, Johnson KP (2003) Linking coevolutionary history to ecological process: Doves and lice. Evolution 57:2335-2341
10. Coello J, Cantagrel JM, Hernán F, Fúster JM, Ibarrola E, Ancochea E, Casquet C, Jamond C, Díaz de Téran JR, Cendrero A (1992) Evolution of the eastern volcanic ridge of the Canary Islands based on new K-Ar data. J Volcanol Geotherm Res 53:251-274
11. del Hoyo J, Elliott A, Sargatal J (1997) Handbook of the birds of the world, vol 4. Sandgrouse to cuckoos. Lynx, Barcelona
12. Dietzen C, Witt H-H, Wink M (2003) The phylogeographic differentiation of the European robin Erithacus rubecula on the Canary Islands revealed by mitochondrial DNA sequence data and morphometrics: Evidence for a new robin taxon on Gran Canaria? Avian Sci 3:115-131
13. Dietzen C, Voigt C, Wink M, Gahr M, Leitner S (2005) Phylogeography of island canary (Serinus canaria) populations. J Ornithol 147:485-494
14. Dietzen C, Garcia-del-Rey E, Delgado G, Wink M (2008a) Phylogenetic differentiation of Sylvia species (Aves: Passeriformes) of the Atlantic islands (Macaronesia) based on mitochondrial DNA sequence data and morphometrics. Biol J Linn Soc 95:157-174
15. Dietzen C, Garcia-del-Rey E, Delgado G, Wink M (2008b) Phylogeography of the blue tit (Parus teneriffae - group) on the Canary Islands based on mitochondrial DNA sequence data and morphometrics. J Ornithol 149:1-12
16. Emmerson KW, Martin A, Delgado G, Quilis V (1986) Distribution and some aspects of the breeding biology of Bolle's pigeon (Columba bollii) on Tenerife. Die Vogelwelt 107:52-65
17. Ericson PG, Anderson CL, Britton T, Elzanowski A, Johansson US, Källersjö M, Ohlson JI, Parsons TJ, Zuccon D, Mayr G (2006) Diversification of Neoaves: Integration of molecular sequence data and fossils. Biol Lett 2:543-547
18. Friesen VL (2000) Introns. In: Baker AJ (ed) Molecular methods in ecology. Blackwell, Oxford, pp 274-294
19. Garcia-del-Rey E, Delgado G, Gonzalez J, Wink M (2007) Canary Island great spotted woodpecker (Dendrocopos major) has distinct mtDNA. J Ornithol 148:531-536
20. Gibbs D, Barnes E, Cox J (2001) Pigeons and doves. A guide to the pigeons and doves of the world. Pica Press, Sussex
21. Gonzalez J, Wink M, Garcia-del-Rey E, Delgado G (2008) Evidence from DNA nucleotide sequences and ISSR profiles indicates paraphyly in subspecies of southern grey shrike (Lanius meridionalis). J Ornithol 149:495-506
22. Goodwin D (1959) Taxonomy of the genus Columba. Bull Brit Mus (Nat Hist) Zool 6. In: Goodwin D (1977) Pigeons and doves of the world, 2nd edn. British Museum (Natural History). Cornell University Press, Ithaca
23. Goodwin D (1977) Pigeons and doves of the world, 2nd edn. British museum (natural history). Cornell University Press, Ithaca
24. Goodwin D (1983) Pigeons and doves of the world, 3rd edn. British museum (natural history). Cornell University Press, Ithaca
25. Grosso AR, Bastos-Silveira C, Coelho MM, Dias D (2006) Columba palumbus cyt b -like numt sequence: Comparison with functional homologue and the use of universal primers. Folia Zool 55:131-144
26. Haddrath O, Baker AJ (2001) Complete mitochondrial DNA genome sequences of extinct birds: Ratite phylogenetics and the vicariance biogeography hypothesis. Proc R Soc Lond B 268:939-945
27. Hall TA (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
28. Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape split by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174
29. Hedges SB, Parker PH, Sibley CG, Kumar S (1996) Continental breakup and the ordinal diversification of birds and mammals. Nature 381:226-229
30. Hernández MA, Martín A (2003) BWP update. The birds of western Palearctic, vol 5. Oxford University Press, Oxford, pp 215-228
31. Hugall AF, Foster R, Lee MSY (2007) Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1. Syst Biol 56:543-563
32. Jacobs BF (2004) Palaeobotanical studies from tropical Africa: Relevance to the evolution of forest, woodland and savannah biomes. Philos Trans R Soc Lond B 359:1573-1583
33. Johnson KP, Clayton DH (2000) Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes). Mol Phylogenet Evol 14:141-151
34. Johnson KP, De Kort S, Dinwoodey K, Mateman AC, Ten Cate C, Lessells CM, Clayton DH (2001) A molecular phylogeny of the dove genera Streptopelia and Columba. Auk 118:874-887
35. Johnson KP, Adams RJ, Page RDM, Clayton DH (2003) When do parasites fail to speciate in response to host speciation? Syst Biol 52:37-47
36. Kishino H, Thorne JL, Bruno WJ (2001) Performance of a divergence time estimation method under a probabilistic model of rate evolution. Mol Biol Evol 18:352-361
37. Kvist L, Broggi J, Illera JC, Koivula K (2005) Colonization and diversification of the blue tits (Parus caeruleus teneriffae 'group) in the Canary Islands. Mol Phylogenet Evol 34:501-511
38. Lovette IJ (2004) Mitochondrial dating and support for the 2% rule in birds. Auk 121:1-6
39. Machado MC (1996) Reconstrucción paleoecológica y etnoarqueológica por medio del análisis antracológico. La Cueva de Villaverde, Fuerteventura. In: Ramil-Rego P, Fernández Rodríguez C, Rodríguez Guitián M (eds) Biogeografía pleistocena-holocena de la Península Ibérica. Junta de Galicia, Santiago de Compostela, Spain, pp 261-274
40. Martín A, Lorenzo JA (2001) Aves del archipiélago canario. Francisco Lemus Editor, La Laguna
41. Martín A, Hernández MA, Lorenzo JA, Nogales M, González C (2000) Las palomas endémicas de Canarias. Consejería de Política Territorial y Medio Ambiente del Gobierno de Canarias and SEO/BirdLife. Santa Cruz de Tenerife, Spain
42. Mayr E (1942) Systematics and the origin of species. Columbia University Press, New York
43. Médail F, Quézel P (1999) The phytogeographical significance of S.W. Morocco compared to the Canary Islands. Plant Ecol 140:221-244
44. Moore WS, DeFilippis VR (1997) The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b. In: Mindell DP (ed) Avian molecular evolution and systematics. Academic Press, San Diego, pp 83-119
45. Päckert M, Dietzen C, Martens J, Wink M, Kvist L (2006) Radiation of Atlantic goldcrests Regulus regulus spp.: Evidence of a new taxon from the Canary Islands. J Avian Biol 37:364-380
46. Pamilo P, Nei M (1988) Relationships between gene trees and species trees. Mol Biol Evol 5:568-583
47. Pereira SL, Baker AJ (2006) A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock. Mol Biol Evol 23:1731-1740
48. Pereira SL, Johnson KP, Clayton DH, Baker AJ (2007) Mitochondrial and nuclear DNA sequences support a Cretaceous origin of Columbiformes and a dispersal-driven radiation in the Paleogene. Syst Biol 56:656-672
49. Rando JC, Perera MA (1994) Primeros datos de ornitofagia entre los aborígenes de Fuerteventura (Islas Canarias). Archaeofauna 3:13-19
50. Rodríguez O (2005) Flora y vegetación terrestre. La transformación del paisaje vegetal. In: Rodríguez O (ed) Patrimonio Natural de la isla de Fuerteventura. Litografía Romero, Tenerife, pp 141-143
51. Rodríguez O, García A, Reyes JA (2000) Estudio fitosociológico de la vegetación actual de Fuerteventura (islas Canarias). Vieraea 28:61-104
52. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
53. Rutschmann F, Eriksson T, Salim KA, Conti E (2007) Assessing calibration uncertainty in molecular dating: The assignment of fossils to alternative calibration points. Syst Biol 56:591-608
54. Santos A (1989) Bosques de laurisilva en la región macaronésica. Consejo de Europa
55. Shapiro B, Sibthorpe D, Rambaut A, Austin J, Wragg GM, Bininda-Emonds ORP, Lee PLM, Cooper A (2007) Flight of the dodo. Science 295:1683
56. Shields GF, Wilson AC (1987) Calibration of mitochondrial DNA evolution in geese. J Mol Evol 24:212-217
57. Stresemann E (1927-1934) Aves. In: Kükenthal W, Krumbach T (eds) Handbuch der Zoologie. Walter de Gruyter, Berlin, pp 646-647
58. Sunding P (1979) Origins of the Macaronesian flora. In: Bramwell D (ed) Plants and islands. Academic Press, New York, pp 13-40
59. Swofford DL (2002) PAUP*, phylogenetic analysis using parsimony (and other methods), version 4.0b10a. Sinauer, Sunderland
60. Tavaré S (1986) Some probabilistic and statistical problems in the analysis of DNA sequences. In: Miura RM (ed) Some mathematical questions in biology - DNA sequence analysis. American Mathematical Society, Providence, pp 57-86
61. Thorne JL, Kishino H (2002) Divergence time and evolutionary rate estimation with multilocus data. Syst Biol 51:689-702
62. Thorne JL, Kishino H, Painter IS (1998) Estimating the rate of evolution of the rate of evolution. Mol Biol Evol 15:1647-1657
63. van Tuinen M, Sibley CG, Hedges SB (1998) Phylogeny and biogeography of ratite birds inferred from DNA sequences of mitochondrial ribosomal genes. Mol Biol Evol 15:370-376
64. Volsøe H (1955) The breeding birds of the Canary Islands II. Origin and history of the Canarian avifauna. Vidensk Medd Dansk Nat Foren 117:117-178
65. Wiegmann BM, Yeates DK, Throne JL, Kishino H (2003) Time flies, a new molecular time-scale for brachyceran fly evolution without a clock. Syst Biol 52:745-756
66. Wilson AC, Cann RL, Carr SM, George M, Gyllensten UB, Helm-Bychowski KM, Higuchi RG, Palumbi SR, Prager EM, Sage RD, Stoneking M (1985) Mitochondrial DNA and two perspectives on evolutionary genetics. Biol J Linn Soc 26:375-400
67. Zuckerkandl E, Pauling L (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, Vogel H (eds) Evolving genes and proteins. Academic Press, New York, pp 97-166