-
2
-
-
0034684616
-
Expression and function of Ets transcription factors in mammalian development: A regulatory network
-
Maroulakou, I., and D. Bowe. 2000. Expression and function of Ets transcription factors in mammalian development: a regulatory network. Oncogene. 19:6432-6442.
-
(2000)
Oncogene
, vol.19
, pp. 6432-6442
-
-
Maroulakou, I.1
Bowe, D.2
-
3
-
-
0035053713
-
The Ets family contains transcriptional activators and repressors involved in angiogenesis
-
DOI 10.1016/S1357-2725(01)00025-5, PII S1357272501000243
-
Lelièvre, E., F. Lionneton, S. Soncin, and B. Vandenbunder. 2001. The Ets family contains transcriptional activators and repressors involved in angiogenesis. Int. J. Biochem. Cell Biol. 33:391-407. (Pubitemid 32324006)
-
(2001)
International Journal of Biochemistry and Cell Biology
, vol.33
, Issue.4
, pp. 391-407
-
-
Lelievre, E.1
Lionneton, F.2
Soncin, F.3
Vandenbunder, B.4
-
4
-
-
0035019487
-
Role of ETS family transcription factors in vascular development and angiogenesis
-
DOI 10.1247/csf.26.19
-
Sato, Y. 2001. Role of ETS family transcription factors in vascular development and angiogenesis. Cell Struct. Funct. 26:19-24. (Pubitemid 32421948)
-
(2001)
Cell Structure and Function
, vol.26
, Issue.1
, pp. 19-24
-
-
Sato, Y.1
-
5
-
-
33751324537
-
Regulation of vascular inflammation and remodeling by ETS factors
-
Oettgen, P. 2006. Regulation of vascular inflammation and remodeling by ETS factors. Circ. Res. 99:1159-1166.
-
(2006)
Circ. Res.
, vol.99
, pp. 1159-1166
-
-
Oettgen, P.1
-
6
-
-
2942529276
-
The biology of the Ets1 proto-oncogene
-
DOI 10.1186/1476-4598-2-29
-
Dittmer, J. 2003. The biology of the Ets1 proto-oncogene. Mol. Cancer. 2:29. (Pubitemid 38751468)
-
(2003)
Molecular Cancer
, vol.2
, pp. 29
-
-
Dittmer, J.1
-
7
-
-
4544268945
-
ETS transcription factors: Possible targets for cancer therapy
-
Oikawa, T. 2004. ETS transcription factors: possible targets for cancer therapy. Cancer Sci. 95:626-633.
-
(2004)
Cancer Sci.
, vol.95
, pp. 626-633
-
-
Oikawa, T.1
-
8
-
-
27544515095
-
ETS transcription factors and their emerging roles in human cancer
-
DOI 10.1016/j.ejca.2005.08.013, PII S0959804905007148, Transcription Factors in Cancer
-
Seth, A., and D. Watson. 2005. ETS transcription factors and their emerging roles in human cancer. Eur. J. Cancer. 41:2462-2478. (Pubitemid 41540623)
-
(2005)
European Journal of Cancer
, vol.41
, Issue.16
, pp. 2462-2478
-
-
Seth, A.1
Watson, D.K.2
-
9
-
-
0037028211
-
Expression of the transcription factor Ets-1 is an independent prognostic marker for relapse-free survival in breast cancer
-
Span, P., P. Manders, J. Heuvel, C. Thomas, R. Bosch, et al. 2002. Expression of the transcription factor Ets-1 is an independent prognostic marker for relapse-free survival in breast cancer. Oncogene. 21:8506-8509.
-
(2002)
Oncogene
, vol.21
, pp. 8506-8509
-
-
Span, P.1
Manders, P.2
Heuvel, J.3
Thomas, C.4
Bosch, R.5
-
10
-
-
27544508293
-
The transcription factor Ets-1 in breast cancer
-
Lincoln, D., and K. Bove. 2005. The transcription factor Ets-1 in breast cancer. Front. Biosci. 10:506-511.
-
(2005)
Front. Biosci.
, vol.10
, pp. 506-511
-
-
Lincoln, D.1
Bove, K.2
-
11
-
-
0041734809
-
Ets-1 expression in vascular endothelial cells as an angiogenic and prognostic factor in colorectal carcinoma
-
Tokuhara, K., Y. Ogata, M. Nakagawa, and K. Shirouzu. 2003. Ets-1 expression in vascular endothelial cells as an angiogenic and prognostic factor in colorectal carcinoma. Int. Surg. 88:25-33. (Pubitemid 39619795)
-
(2003)
International Surgery
, vol.88
, Issue.1
, pp. 27-33
-
-
Tokuhara, K.1
Ogata, Y.2
Nakagawa, M.3
Shirouzu, K.4
-
12
-
-
0034669423
-
Expression of c-Ets1 is associated with malignant potential in endometrial carcinoma
-
Takai, N., T. Miyazaki, K. Fujisawa, K. Nasu, and I. Miyakawa. 2000. Expression of c-Ets1 is associated with malignant potential in endometrial carcinoma. Cancer. 89:2059-2067.
-
(2000)
Cancer
, vol.89
, pp. 2059-2067
-
-
Takai, N.1
Miyazaki, T.2
Fujisawa, K.3
Nasu, K.4
Miyakawa, I.5
-
13
-
-
0036808985
-
Clinical implications of expression of ETS-1 related to angiogenesis in uterine cervical cancers
-
DOI 10.1093/annonc/mdf248
-
Fujimoto, J., I. Aoki, H. Toyoki, S. Khatun, and T. Tamaya. 2002. Clinical implications of expression of ETS-1 related to angiogenesis in uterine cervical cancers. Ann. Oncol. 13:1598-1604. (Pubitemid 35331457)
-
(2002)
Annals of Oncology
, vol.13
, Issue.10
, pp. 1598-1604
-
-
Fujimoto, J.1
Aoki, I.2
Toyoki, H.3
Khatun, S.4
Tamaya, T.5
-
14
-
-
16344382943
-
Ets-1 expression in gastric cancer
-
Tsutsumi, S., H. Kuwano, N. Nagashima, T. Shimura, E. Mochiki, et al. 2005. Ets-1 expression in gastric cancer. Hepatogastroenterology. 52:654-656.
-
(2005)
Hepatogastroenterology
, vol.52
, pp. 654-656
-
-
Tsutsumi, S.1
Kuwano, H.2
Nagashima, N.3
Shimura, T.4
Mochiki, E.5
-
15
-
-
16844384594
-
Stromelysin 3, Ets-1, and vascular endothelial growth factor expression in oral precancerous and cancerous lesions: Correlation with microvessel density, progression, and prognosis
-
Arora, S., J. Kaur, C. Sharma, M. Mathur, S. Bahadur, et al. 2005. Stromelysin 3, Ets-1, and vascular endothelial growth factor expression in oral precancerous and cancerous lesions: correlation with microvessel density, progression, and prognosis. Clin. Cancer Res. 11:2272-2284.
-
(2005)
Clin. Cancer Res.
, vol.11
, pp. 2272-2284
-
-
Arora, S.1
Kaur, J.2
Sharma, C.3
Mathur, M.4
Bahadur, S.5
-
16
-
-
0034907329
-
Ets-1 messenger RNA expression is a novel marker of poor survival in ovarian carcinoma
-
Davidson, B., R. Reich, I. Goldberg, W. Gotlieb, J. Kopolovic, et al. 2001. Ets-1 messenger RNA expression is a novel marker of poor survival in ovarian carcinoma. Clin. Cancer Res. 7:551-557.
-
(2001)
Clin. Cancer Res.
, vol.7
, pp. 551-557
-
-
Davidson, B.1
Reich, R.2
Goldberg, I.3
Gotlieb, W.4
Kopolovic, J.5
-
17
-
-
0036511153
-
C-Ets1 is a promising marker in epithelial ovarian cancer
-
Takai, N., T. Miyazaki, M. Nishida, K. Nasu, and I. Miyakawa. 2002. c-Ets1 is a promising marker in epithelial ovarian cancer. Int. J. Mol. Med. 9:287-292.
-
(2002)
Int. J. Mol. Med.
, vol.9
, pp. 287-292
-
-
Takai, N.1
Miyazaki, T.2
Nishida, M.3
Nasu, K.4
Miyakawa, I.5
-
18
-
-
4444380264
-
Clinical implications of expression of ETS-1 related to angiogenesis in metastatic lesions of ovarian cancer
-
Fujimoto, J., I. Aoki, H. Toyoki, S. Khatun, E. Sato, et al. 2004. Clinical implications of expression of ETS-1 related to angiogenesis in metastatic lesions of ovarian cancer. Oncology. 66:420-428.
-
(2004)
Oncology
, vol.66
, pp. 420-428
-
-
Fujimoto, J.1
Aoki, I.2
Toyoki, H.3
Khatun, S.4
Sato, E.5
-
19
-
-
0032514673
-
Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site
-
Slupsky, C., L. Gentile, L. Donaldson, C. Mackereth, J. Seidel, et al. 1998. Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site. Proc. Natl. Acad. Sci. USA. 95:12129-12134.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12129-12134
-
-
Slupsky, C.1
Gentile, L.2
Donaldson, L.3
Mackereth, C.4
Seidel, J.5
-
20
-
-
0030048767
-
Ras-mediated phosphorylation of a conserved threonine residue enhances the transactivation activities of c-Ets1 and c-Ets2
-
Yang, B., C. Hauser, G. Henkel, M. Colman, C. Beveren, et al. 1996. Ras-mediated phosphorylation of a conserved threonine residue enhances the transactivation activities of c-Ets1 and c-Ets2. Mol. Cell. Biol. 16:538-547.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 538-547
-
-
Yang, B.1
Hauser, C.2
Henkel, G.3
Colman, M.4
Beveren, C.5
-
21
-
-
0026860033
-
Analysis of the DNA-binding and transcriptional activation properties of the Ets1 oncoprotein
-
Gegonne, A., B. Punyammalee, B. Rabault, R. Bosselut, S. Seneca, et al. 1992. Analysis of the DNA-binding and transcriptional activation properties of the Ets1 oncoprotein. New Biol. 4:512-519.
-
(1992)
New Biol.
, vol.4
, pp. 512-519
-
-
Gegonne, A.1
Punyammalee, B.2
Rabault, B.3
Bosselut, R.4
Seneca, S.5
-
22
-
-
0027967479
-
Secondary structure of the ETS domain places murine Ets-1 in the superfamily of winged helix-turn-helix DNA-binding proteins
-
DOI 10.1021/bi00250a001
-
Donaldson, L., J. Petersen, B. Graves, and L. McIntosh. 1994. Secondary structure of the ETS domain places murine Ets-1 in the superfamily of winged helix-turn-helix DNA-binding proteins. Biochemistry. 33:13509-13516. (Pubitemid 24381911)
-
(1994)
Biochemistry
, vol.33
, Issue.46
, pp. 13509-13516
-
-
Donaldson, L.W.1
Petersen, J.M.2
Graves, B.J.3
McIntosh, L.P.4
-
23
-
-
0026729269
-
Interaction of murine Ets-1 with GGA-binding sites establishes the ETS domain as a new DNA-binding motif
-
Nye, J., J. Petersen, C. Gunther, M. Jonsen, and B. Graves. 1992. Interaction of murine Ets-1 with GGA-binding sites establishes the ETS domain as a new DNA-binding motif. Genes Dev. 6:975-990.
-
(1992)
Genes Dev.
, vol.6
, pp. 975-990
-
-
Nye, J.1
Petersen, J.2
Gunther, C.3
Jonsen, M.4
Graves, B.5
-
24
-
-
0031298118
-
Correction of the NMR structure of the ETS1/DNA complex
-
Werner, M., G. Clore, C. Fisher, R. Fisher, L. Trinh, et al. 1997. Correction of the NMR structure of the ETS1/DNA complex. J. Biomol. NMR. 10:317-328.
-
(1997)
J. Biomol. NMR
, vol.10
, pp. 317-328
-
-
Werner, M.1
Clore, G.2
Fisher, C.3
Fisher, R.4
Trinh, L.5
-
25
-
-
0041848579
-
Sequence specific DNA binding of Ets-1 transcription factor: Molecular dynamics study of the Ets domain-DNA complexes
-
Obika, S., S. Reddy, and T. Bruice. 2003. Sequence specific DNA binding of Ets-1 transcription factor: molecular dynamics study of the Ets domain-DNA complexes. J. Mol. Biol. 331:345-359.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 345-359
-
-
Obika, S.1
Reddy, S.2
Bruice, T.3
-
27
-
-
0026730324
-
An inhibitory carboxyl-terminal domain in Ets-1 and Ets-2 mediates differential binding of ETS family factors to promotor sequences of the MB-1 gene
-
Hagman, J., and R. Grosschedl. 1992. An inhibitory carboxyl-terminal domain in Ets-1 and Ets-2 mediates differential binding of ETS family factors to promotor sequences of the MB-1 gene. Proc. Natl. Acad. Sci. USA. 89:8889-8893.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 8889-8893
-
-
Hagman, J.1
Grosschedl, R.2
-
28
-
-
0026533890
-
DNA-binding by c-Ets-1, but not v-Ets, is repressed by an intramolecular mechanism
-
Lim, F., N. Kraut, J. Frampton, and T. Graf. 1992. DNA-binding by c-Ets-1, but not v-Ets, is repressed by an intramolecular mechanism. EMBO J. 11:643-652.
-
(1992)
EMBO J.
, vol.11
, pp. 643-652
-
-
Lim, F.1
Kraut, N.2
Frampton, J.3
Graf, T.4
-
29
-
-
0026634171
-
A novel modulator domain of ETS transcription factors
-
Wasylyk, C., J. Kerckaert, and B. Wasylyk. 1992. A novel modulator domain of ETS transcription factors. Genes Dev. 6:965-974.
-
(1992)
Genes Dev.
, vol.6
, pp. 965-974
-
-
Wasylyk, C.1
Kerckaert, J.2
Wasylyk, B.3
-
30
-
-
0029958777
-
Characterization of the cooperative function of inhibitory sequences in Ets-1
-
Jonsen, M., J. Petersen, Q. Xu, and B. Graves. 1996. Characterization of the cooperative function of inhibitory sequences in Ets-1. Mol. Cell. Biol. 16:2065-2073. (Pubitemid 26123726)
-
(1996)
Molecular and Cellular Biology
, vol.16
, Issue.5
, pp. 2065-2073
-
-
Jonsen, M.D.1
Petersen, J.M.2
Xu, Q.-P.3
Graves, B.J.4
-
31
-
-
21744436606
-
Variable control of Ets-1 DNA binding by multiple phosphates in an unstructured region
-
Pufall, M., G. Lee, M. Nelson, H. Kang, A. Velyvis, et al. 2005. Variable control of Ets-1 DNA binding by multiple phosphates in an unstructured region. Science. 309:142-145.
-
(2005)
Science
, vol.309
, pp. 142-145
-
-
Pufall, M.1
Lee, G.2
Nelson, M.3
Kang, H.4
Velyvis, A.5
-
32
-
-
0036441510
-
Autoinhibitory domains: Modular effectors of cellular regulation
-
Pufall, M., and B. Graves. 2002. Autoinhibitory domains: modular effectors of cellular regulation. Annu. Rev. Cell Dev. Biol. 18:421-462.
-
(2002)
Annu. Rev. Cell Dev. Biol.
, vol.18
, pp. 421-462
-
-
Pufall, M.1
Graves, B.2
-
33
-
-
0027956197
-
The oncoprotein v-Ets is less selective in DNA binding than c-Ets-1 due to the C-terminal sequence change
-
Hahn, S., and B. Wasylyk. 1994. The oncoprotein v-Ets is less selective in DNA-binding than c-Ets-1 due to the C-terminal sequence change. Oncogene. 9:2499-2512. (Pubitemid 24254025)
-
(1994)
Oncogene
, vol.9
, Issue.9
, pp. 2499-2512
-
-
Hahn, S.L.1
Wasylyk, B.2
-
34
-
-
0033559972
-
Mutual activation of Ets-1 and AML1 DNA binding by direct interaction of their autoinhibitory domains
-
Kim, W., M. Sieweke, E. Ogawa, H. Wee, U. Englmeier, et al. 1999. Mutual activation of Ets-1 and AML1 DNA binding by direct interaction of their autoinhibitory domains. EMBO J. 18:1609-1620.
-
(1999)
EMBO J.
, vol.18
, pp. 1609-1620
-
-
Kim, W.1
Sieweke, M.2
Ogawa, E.3
Wee, H.4
Englmeier, U.5
-
35
-
-
0033988443
-
Auto-inhibition of Ets-1 is counteracted by DNA binding cooperativity with core-binding factor α2
-
Goetz, T., T. Gu, N. Speck, and B. Graves. 2000. Auto-inhibition of Ets-1 is counteracted by DNA binding cooperatively with core-binding factor α2. Mol. Cell. Biol. 20:81-90. (Pubitemid 30002550)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.1
, pp. 81-90
-
-
Goetz, T.L.1
Gu, T.-L.2
Speck, N.A.3
Graves, B.J.4
-
36
-
-
0027939420
-
Calcium-induced phosphorylation of ETS1 inhibits its specific DNA binding activity
-
Rabault, B., and J. Ghysdael. 1994. Calcium-induced phosphorylation of ETS1 inhibits its specific DNA binding activity. J. Biol. Chem. 45:28143-28151. (Pubitemid 24354549)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.45
, pp. 28143-28151
-
-
Rabault, B.1
Ghysdael, J.2
-
37
-
-
0034141710
-
Phosphorylation represses Ets-1 DNA binding by reinforcing autoinhibition
-
Cowley, D., and B. Graves. 2000. Phosphorylation represses Ets-1 DNA binding by reinforcing autoinhibition. Genes Dev. 14:366-376. (Pubitemid 30106491)
-
(2000)
Genes and Development
, vol.14
, Issue.3
, pp. 366-376
-
-
Cowley, D.O.1
Graves, B.J.2
-
38
-
-
0036911237
-
Calcium regulation of GM-CSF by calmodulin-dependent kinase II phosphorylation of ETs1
-
DOI 10.1091/mbc.E02-03-0149
-
Liu, H., and T. Grundström. 2002. Calcium regulation of GM-CSF by calmodulin-dependent kinase II phosphorylation of Ets1. Mol. Biol. Cell. 13:4497-4507. (Pubitemid 35471201)
-
(2002)
Molecular Biology of the Cell
, vol.13
, Issue.12
, pp. 4497-4507
-
-
Liu, H.1
Grundstrom, T.2
-
39
-
-
33747592823
-
Graded regulation of the Kv2.1 potassium channel by variable phosphorylation
-
DOI 10.1126/science.1124254
-
Park, K., D. Mohapatra, H. Misonou, and J. Trimmer. 2006. Graded regulation of the Kv2.1 potassium channel by variable phosphorylation. Science. 313:976-979. (Pubitemid 44267390)
-
(2006)
Science
, vol.313
, Issue.5789
, pp. 976-979
-
-
Park, K.-S.1
Mohapatra, D.P.2
Misonou, H.3
Trimmer, J.S.4
-
40
-
-
0028874393
-
Modulation of transcription factor Ets-1 DNA binding: DNA-induced unfolding of an β-helix
-
Petersen, J., J. Skalicky, L. Donaldson, L. McIntosh, T. Alber, et al. 1995. Modulation of transcription factor Ets-1 DNA binding: DNA-induced unfolding of an β-helix. Science. 269:1866-1869.
-
(1995)
Science
, vol.269
, pp. 1866-1869
-
-
Petersen, J.1
Skalicky, J.2
Donaldson, L.3
McIntosh, L.4
Alber, T.5
-
41
-
-
14844326275
-
The structural and dynamic basis of Ets-1 DNA binding autoinhibition
-
Lee, G., L. Donaldson, M. Pufall, H. Kang, I. Pot, et al. 2005. The structural and dynamic basis of Ets-1 DNA binding autoinhibition. J. Biol. Chem. 280:7088-7099.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 7088-7099
-
-
Lee, G.1
Donaldson, L.2
Pufall, M.3
Kang, H.4
Pot, I.5
-
42
-
-
0029048413
-
Structure of Bam HI endonuclease bound to DNA: Partial folding and unfolding on DNA binding
-
Newman, M., T. Strzelecka, L. Dorner, I. Schildkraut, and A. Aggarwal. 1995. Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science. 269:656-663.
-
(1995)
Science
, vol.269
, pp. 656-663
-
-
Newman, M.1
Strzelecka, T.2
Dorner, L.3
Schildkraut, I.4
Aggarwal, A.5
-
43
-
-
0347928848
-
Structural analysis of the autoinhibition of Ets-1 and its role in protein partnerships
-
DOI 10.1074/jbc.M206327200
-
Garvie, C., M. Pufall, B. Graves, and C. Wolberger. 2002. Structural analysis of the autoinhibition of Ets-1 and its role in protein partnerships. J. Biol. Chem. 277:45529-45536. (Pubitemid 36159163)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.47
, pp. 45529-45536
-
-
Garvie, C.W.1
Pufall, M.A.2
Graves, B.J.3
Wolberger, C.4
-
44
-
-
0030038146
-
Structural coupling of the inhibitory regions flanking the ETS domain of murine Ets-1
-
Skalicky, J., L. Donaldson, J. Petersen, B. Graves, and L. McIntosh. 1996. Structural coupling of the inhibitory regions flanking the ETS domain of murine Ets-1. Protein Sci. 5:296-309. (Pubitemid 26054286)
-
(1996)
Protein Science
, vol.5
, Issue.2
, pp. 296-309
-
-
Skalicky, J.J.1
Donaldson, L.W.2
Petersen, J.M.3
Graves, B.J.4
McIntosh, L.P.5
-
45
-
-
0029670530
-
A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex
-
Kodandapani, R., F. Pio, C. Ni, G. Piccialli, M. Klemsz, et al. 1996. A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex. Nature. 380:456-460.
-
(1996)
Nature
, vol.380
, pp. 456-460
-
-
Kodandapani, R.1
Pio, F.2
Ni, C.3
Piccialli, G.4
Klemsz, M.5
-
46
-
-
0032135105
-
Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: Insights into DNA sequence discrimination by Ets proteins
-
Mo, Y., B. Vaessen, K. Johnston, and R. Marmorstein. 1998. Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: insights into DNA sequence discrimination by Ets proteins. Mol. Cell. 2:201-212.
-
(1998)
Mol. Cell.
, vol.2
, pp. 201-212
-
-
Mo, Y.1
Vaessen, B.2
Johnston, K.3
Marmorstein, R.4
-
47
-
-
0032512459
-
The structure of GABPα/β: An ETS domain ankyrin repeat heterodimer bound to DNA
-
Batchelor, A., D. Piper, F. de la Brousse, S. McKnight, and C. Wolberger. 1998. The structure of GABPα/β: an ETS domain ankyrin repeat heterodimer bound to DNA. Science. 279:1037-1041.
-
(1998)
Science
, vol.279
, pp. 1037-1041
-
-
Batchelor, A.1
Piper, D.2
De La Brousse, F.3
McKnight, S.4
Wolberger, C.5
-
48
-
-
0034031280
-
Structure of the Elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA
-
DOI 10.1038/74055
-
Mo, Y., B. Vaessen, K. Johnston, and R. Marmorstein. 2000. Structure of the Elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA. Nat. Struct. Biol. 7:292-297. (Pubitemid 30194452)
-
(2000)
Nature Structural Biology
, vol.7
, Issue.4
, pp. 292-297
-
-
Mo, Y.1
Vaessen, B.2
Johnston, K.3
Marmorstein, R.4
-
49
-
-
0035875907
-
The B-box dominates SAP-1-SRF interactions in the structure of the ternary complex
-
DOI 10.1093/emboj/20.12.3018
-
Hassler, M., and T. Richmond. 2001. The B-box dominates SAP-1-SRF interactions in the structure of the ternary complex. EMBO J. 20:3018-3028. (Pubitemid 32611989)
-
(2001)
EMBO Journal
, vol.20
, Issue.12
, pp. 3018-3028
-
-
Hassler, M.1
Richmond, T.J.2
-
50
-
-
0035697276
-
Structural studies of Ets-1/Pax5 complex formation on DNA
-
DOI 10.1016/S1097-2765(01)00410-5
-
Garvie, C., J. Hagman, and C. Wolberger. 2001. Structural studies of Ets-1/Pax5 complex formation on DNA. Mol. Cell. 8:1267-1276. (Pubitemid 34084998)
-
(2001)
Molecular Cell
, vol.8
, Issue.6
, pp. 1267-1276
-
-
Garvie, C.W.1
Hagman, J.2
Wolberger, C.3
-
51
-
-
0037127314
-
Inhibitory module of Ets-1 allosterically regulates DNA binding through a dipole-facilitated phosphate contact
-
Wang, H., L. McIntosh, and B. Graves. 2002. Inhibitory module of Ets-1 allosterically regulates DNA binding through a dipole-facilitated phosphate contact. J. Biol. Chem. 277:2225-2233.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 2225-2233
-
-
Wang, H.1
McIntosh, L.2
Graves, B.3
-
52
-
-
33746271105
-
Biomolecular modeling: Goals, problems, perspectives
-
van Gunsteren, W., D. Bakowies, R. Baron, I. Chandrasekhar, M. Christen, et al. 2006. Biomolecular modeling: goals, problems, perspectives. Angew. Chem. Int. Ed. 45:4064-4092.
-
(2006)
Angew. Chem. Int. Ed.
, vol.45
, pp. 4064-4092
-
-
Van Gunsteren, W.1
Bakowies, D.2
Baron, R.3
Chandrasekhar, I.4
Christen, M.5
-
53
-
-
0030044420
-
Solution structure of the ETS domain from murine Ets-1: A winged helix-turn-helix DNA binding motif
-
Donaldson, L., J. Petersen, B. Graves, and L. McIntosh. 1996. Solution structure of the ETS domain from murine Ets-1: a winged helix-turn-helix DNA binding motif. EMBO J. 15:125-134.
-
(1996)
EMBO J.
, vol.15
, pp. 125-134
-
-
Donaldson, L.1
Petersen, J.2
Graves, B.3
McIntosh, L.4
-
54
-
-
0033954256
-
The protein data bank
-
Berman, H., J. Westbrook, Z. Feng, G. Gilliland, T. Bhat, et al. 2000. The protein data bank. Nucleic Acids Res. 128:235-242.
-
(2000)
Nucleic Acids Res.
, vol.128
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
-
55
-
-
0026095641
-
Protonation of interacting residues in a protein by a Monte Carlo method: Application to lysozyme and photosynthetic reaction center
-
Beroza, P., D. Fredkin, M. Okamura, and G. Feher. 1990. Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and photosynthetic reaction center. Proc. Natl. Acad. Sci. USA. 88:5804-5808.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 5804-5808
-
-
Beroza, P.1
Fredkin, D.2
Okamura, M.3
Feher, G.4
-
56
-
-
0242396923
-
3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
-
Lu, X., and W. Olson. 2003. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res. 31:5108-5121.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5108-5121
-
-
Lu, X.1
Olson, W.2
-
57
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W., J. Chandrasekar, J. Madura, R. Impey, and M. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.1
Chandrasekar, J.2
Madura, J.3
Impey, R.4
Klein, M.5
-
58
-
-
0030059225
-
Ligand binding: Molecular mechanics calculation of the streptavidin-biotin rupture force
-
Grubmüller, H., B. Heymann, and P. Tavan. 1996. Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force. Science. 271:997-999.
-
(1996)
Science
, vol.271
, pp. 997-999
-
-
Grubmüller, H.1
Heymann, B.2
Tavan, P.3
-
60
-
-
4043179941
-
DNA and its counterions: A molecular dynamics study
-
Várnai, P., and K. Zakrzewska. 2004. DNA and its counterions: a molecular dynamics study. Nucleic Acids Res. 32:4269-4280.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4269-4280
-
-
Várnai, P.1
Zakrzewska, K.2
-
61
-
-
84986512474
-
CHARMM: A program for macromolecular energy minimization and dynamics calculations
-
Brooks, B., R. Bruccoleri, B. Olafson, D. States, S. Swaninathan, et al. 1983. CHARMM: a program for macromolecular energy minimization and dynamics calculations. J. Comput. Chem. 4:187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.1
Bruccoleri, R.2
Olafson, B.3
States, D.4
Swaninathan, S.5
-
62
-
-
0348244547
-
All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data
-
Foloppe, N., and A. MacKerell. 2000. All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data. J. Comput. Chem. 21:86-104.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 86-104
-
-
Foloppe, N.1
MacKerell, A.2
-
63
-
-
0000214231
-
All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution
-
MacKerell, A., and N. Banavali. 2000. All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution. J. Comput. Chem. 21:105-120.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 105-120
-
-
MacKerell, A.1
Banavali, N.2
-
64
-
-
3142714765
-
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
-
MacKerell, A., M. Feig, and C. Brooks. 2004. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J. Comput. Chem. 25:1400-1415.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-1415
-
-
MacKerell, A.1
Feig, M.2
Brooks, C.3
-
65
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U., L. Perera, M. Berkowitz, T. Darden, H. Lee, et al. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103:8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.3
Darden, T.4
Lee, H.5
-
66
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J., G. Ciccotti, and H. Berendsen. 1977. Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 23:327-341.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.1
Ciccotti, G.2
Berendsen, H.3
-
67
-
-
0001538909
-
Canonical dynamics: Equilibrium phase-space distributions
-
Hoover, W. 1985. Canonical dynamics: equilibrium phase-space distributions. Phys. Rev. A. 31:1695-1697.
-
(1985)
Phys. Rev. A
, vol.31
, pp. 1695-1697
-
-
Hoover, W.1
-
68
-
-
36449000062
-
Nosé-Hoover chains. The canonical ensemble via continuous dynamics
-
Martyna, G., M. Tuckerman, and M. Klein. 1992. Nosé-Hoover chains. The canonical ensemble via continuous dynamics. J. Chem. Phys. 97:2635-2643.
-
(1992)
J. Chem. Phys.
, vol.97
, pp. 2635-2643
-
-
Martyna, G.1
Tuckerman, M.2
Klein, M.3
-
69
-
-
0000026966
-
Explicit reversible integrators for extended systems dynamics
-
Martyna, G., M. Tuckerman, D. Tobias, and M. Klein. 1996. Explicit reversible integration algorithms for extended systems. Mol. Phys. 87:1117-1157. (Pubitemid 126453963)
-
(1996)
Molecular Physics
, vol.87
, Issue.5
, pp. 1117-1157
-
-
Martyna, G.J.1
Tuckerman, M.E.2
Tobias, D.J.3
Klein, M.L.4
-
70
-
-
0012934756
-
Local block bootstrap
-
DOI 10.1016/S1631-073X(02)02578-5, PII S1631073X02025785
-
Paparoditis, E., and D. Politis. 2002. Local block bootstrap. CR Acad. Sci. I. 335:959-962. (Pubitemid 36645916)
-
(2002)
Comptes Rendus Mathematique
, vol.335
, Issue.11
, pp. 959-962
-
-
Paparoditis, E.1
Politis, D.N.2
-
71
-
-
57749199286
-
Testing a correlation coefficient's significance
-
Kubinger, K., D. Rasch, and M. Simeckova. 2007. Testing a correlation coefficient's significance. Psychol. Sci. 49:74-87.
-
(2007)
Psychol. Sci.
, vol.49
, pp. 74-87
-
-
Kubinger, K.1
Rasch, D.2
Simeckova, M.3
-
72
-
-
0026076090
-
Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations
-
Ichiye, T., and M. Karplus. 1991. Collective motions in proteins: a covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations. Proteins. 11:205-217.
-
(1991)
Proteins
, vol.11
, pp. 205-217
-
-
Ichiye, T.1
Karplus, M.2
-
74
-
-
0028912595
-
A sampling problem in molecular dynamics simulations of macromolecules
-
Clarage, J., T. Romo, B. Andrews, B. Pettitt, and G. Phillips. 1995. A sampling problem in molecular dynamics simulations of macromolecules. Proc. Natl. Acad. Sci. USA. 92:3288-3292.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3288-3292
-
-
Clarage, J.1
Romo, T.2
Andrews, B.3
Pettitt, B.4
Phillips, G.5
-
75
-
-
0000127140
-
Method for estimating the configurational entropy of macromolecules
-
Karplus, M., and J. Kushick. 1981. Method for estimating the configurational entropy of macromolecules. Macromolecules. 14:325-332.
-
(1981)
Macromolecules
, vol.14
, pp. 325-332
-
-
Karplus, M.1
Kushick, J.2
-
76
-
-
0000118827
-
Harmonic and quasiharmonic descriptions of crambin
-
Teeter, M., and D. Case. 1990. Harmonic and quasiharmonic descriptions of crambin. J. Phys. Chem. 94:8091-8097.
-
(1990)
J. Phys. Chem.
, vol.94
, pp. 8091-8097
-
-
Teeter, M.1
Case, D.2
-
77
-
-
0346216028
-
Principal components of the protein dynamical transition
-
Tournier, A., and J. Smith. 2003. Principal components of the protein dynamical transition. Phys. Rev. Lett. 91:208106.
-
(2003)
Phys. Rev. Lett.
, vol.91
, pp. 208106
-
-
Tournier, A.1
Smith, J.2
-
78
-
-
0041819710
-
Relative stability of protein structures determined by x-ray crystallography or NMR spectroscopy: A molecular dynamics simulation study
-
Fan, H., and A. Mark. 2003. Relative stability of protein structures determined by x-ray crystallography or NMR spectroscopy: a molecular dynamics simulation study. Proteins. 53:111-120.
-
(2003)
Proteins
, vol.53
, pp. 111-120
-
-
Fan, H.1
Mark, A.2
-
79
-
-
0025732376
-
Simulation analysis of the stability mutant R96H of T4 lysozyme
-
Tidor, B., and M. Karplus. 1991. Simulation analysis of the stability mutant R96H of T4 lysozyme. Biochemistry. 30:3217-3228.
-
(1991)
Biochemistry
, vol.30
, pp. 3217-3228
-
-
Tidor, B.1
Karplus, M.2
-
80
-
-
0017881332
-
The α-helix dipole and the properties of proteins
-
Hol, W., P. van Duijnen, and H. Berendsen. 1978. The α-helix dipole and the properties of proteins. Nature. 273:443-446. (Pubitemid 8356502)
-
(1978)
Nature
, vol.273
, Issue.5662
, pp. 443-446
-
-
Hol, W.G.J.1
Van Duijnen, P.T.2
Berendsen, H.J.C.3
-
81
-
-
0020172455
-
α-Helix dipole model and electrostatic stabilization of 4-α-helical proteins
-
Sheridan, R., R. Levy, and F. Salemme. 1982. α-Helix dipole model and electrostatic stabilization of 4-α-helical proteins. Proc. Natl. Acad. Sci. USA. 79:4545-4549.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 4545-4549
-
-
Sheridan, R.1
Levy, R.2
Salemme, F.3
-
82
-
-
20444424211
-
Molecular dynamics simulations of protein G challenge NMR-derived correlated backbone motions
-
DOI 10.1002/anie.200462957
-
Lange, O., H. Grubmüller, and B. de Groot. 2005. Molecular dynamics simulations of protein G challenge NMR-derived correlated backbone motions. Angew. Chem. Int. Ed. 44:3394-3399. (Pubitemid 40793592)
-
(2005)
Angewandte Chemie - International Edition
, vol.44
, Issue.22
, pp. 3394-3399
-
-
Lange, O.F.1
Grubmuller, H.2
De Groot, B.L.3
|