메뉴 건너뛰기




Volumn 96, Issue 4, 2009, Pages 1307-1317

Correlated motions and interactions at the onset of the DNA-induced partial unfolding of ETS-1

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR ETS 1; DNA; ETS1 PROTEIN, HUMAN;

EID: 62649113018     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2008.11.019     Document Type: Article
Times cited : (28)

References (83)
  • 1
    • 0027458366 scopus 로고
    • The Ets family of transcription factors
    • DOI 10.1111/j.1432-1033.1993.tb19864.x
    • Wasylyk, B., S. Hahn, and A. Giovane. 1993. The Ets family of transcription factors. Eur. J. Biochem. 211:7-18. (Pubitemid 23039491)
    • (1993) European Journal of Biochemistry , vol.211 , Issue.1-2 , pp. 7-18
    • Wasylyk, B.1    Hahn, S.L.2    Giovane, A.3
  • 2
    • 0034684616 scopus 로고    scopus 로고
    • Expression and function of Ets transcription factors in mammalian development: A regulatory network
    • Maroulakou, I., and D. Bowe. 2000. Expression and function of Ets transcription factors in mammalian development: a regulatory network. Oncogene. 19:6432-6442.
    • (2000) Oncogene , vol.19 , pp. 6432-6442
    • Maroulakou, I.1    Bowe, D.2
  • 3
    • 0035053713 scopus 로고    scopus 로고
    • The Ets family contains transcriptional activators and repressors involved in angiogenesis
    • DOI 10.1016/S1357-2725(01)00025-5, PII S1357272501000243
    • Lelièvre, E., F. Lionneton, S. Soncin, and B. Vandenbunder. 2001. The Ets family contains transcriptional activators and repressors involved in angiogenesis. Int. J. Biochem. Cell Biol. 33:391-407. (Pubitemid 32324006)
    • (2001) International Journal of Biochemistry and Cell Biology , vol.33 , Issue.4 , pp. 391-407
    • Lelievre, E.1    Lionneton, F.2    Soncin, F.3    Vandenbunder, B.4
  • 4
    • 0035019487 scopus 로고    scopus 로고
    • Role of ETS family transcription factors in vascular development and angiogenesis
    • DOI 10.1247/csf.26.19
    • Sato, Y. 2001. Role of ETS family transcription factors in vascular development and angiogenesis. Cell Struct. Funct. 26:19-24. (Pubitemid 32421948)
    • (2001) Cell Structure and Function , vol.26 , Issue.1 , pp. 19-24
    • Sato, Y.1
  • 5
    • 33751324537 scopus 로고    scopus 로고
    • Regulation of vascular inflammation and remodeling by ETS factors
    • Oettgen, P. 2006. Regulation of vascular inflammation and remodeling by ETS factors. Circ. Res. 99:1159-1166.
    • (2006) Circ. Res. , vol.99 , pp. 1159-1166
    • Oettgen, P.1
  • 6
    • 2942529276 scopus 로고    scopus 로고
    • The biology of the Ets1 proto-oncogene
    • DOI 10.1186/1476-4598-2-29
    • Dittmer, J. 2003. The biology of the Ets1 proto-oncogene. Mol. Cancer. 2:29. (Pubitemid 38751468)
    • (2003) Molecular Cancer , vol.2 , pp. 29
    • Dittmer, J.1
  • 7
    • 4544268945 scopus 로고    scopus 로고
    • ETS transcription factors: Possible targets for cancer therapy
    • Oikawa, T. 2004. ETS transcription factors: possible targets for cancer therapy. Cancer Sci. 95:626-633.
    • (2004) Cancer Sci. , vol.95 , pp. 626-633
    • Oikawa, T.1
  • 8
    • 27544515095 scopus 로고    scopus 로고
    • ETS transcription factors and their emerging roles in human cancer
    • DOI 10.1016/j.ejca.2005.08.013, PII S0959804905007148, Transcription Factors in Cancer
    • Seth, A., and D. Watson. 2005. ETS transcription factors and their emerging roles in human cancer. Eur. J. Cancer. 41:2462-2478. (Pubitemid 41540623)
    • (2005) European Journal of Cancer , vol.41 , Issue.16 , pp. 2462-2478
    • Seth, A.1    Watson, D.K.2
  • 9
    • 0037028211 scopus 로고    scopus 로고
    • Expression of the transcription factor Ets-1 is an independent prognostic marker for relapse-free survival in breast cancer
    • Span, P., P. Manders, J. Heuvel, C. Thomas, R. Bosch, et al. 2002. Expression of the transcription factor Ets-1 is an independent prognostic marker for relapse-free survival in breast cancer. Oncogene. 21:8506-8509.
    • (2002) Oncogene , vol.21 , pp. 8506-8509
    • Span, P.1    Manders, P.2    Heuvel, J.3    Thomas, C.4    Bosch, R.5
  • 10
    • 27544508293 scopus 로고    scopus 로고
    • The transcription factor Ets-1 in breast cancer
    • Lincoln, D., and K. Bove. 2005. The transcription factor Ets-1 in breast cancer. Front. Biosci. 10:506-511.
    • (2005) Front. Biosci. , vol.10 , pp. 506-511
    • Lincoln, D.1    Bove, K.2
  • 11
    • 0041734809 scopus 로고    scopus 로고
    • Ets-1 expression in vascular endothelial cells as an angiogenic and prognostic factor in colorectal carcinoma
    • Tokuhara, K., Y. Ogata, M. Nakagawa, and K. Shirouzu. 2003. Ets-1 expression in vascular endothelial cells as an angiogenic and prognostic factor in colorectal carcinoma. Int. Surg. 88:25-33. (Pubitemid 39619795)
    • (2003) International Surgery , vol.88 , Issue.1 , pp. 27-33
    • Tokuhara, K.1    Ogata, Y.2    Nakagawa, M.3    Shirouzu, K.4
  • 12
    • 0034669423 scopus 로고    scopus 로고
    • Expression of c-Ets1 is associated with malignant potential in endometrial carcinoma
    • Takai, N., T. Miyazaki, K. Fujisawa, K. Nasu, and I. Miyakawa. 2000. Expression of c-Ets1 is associated with malignant potential in endometrial carcinoma. Cancer. 89:2059-2067.
    • (2000) Cancer , vol.89 , pp. 2059-2067
    • Takai, N.1    Miyazaki, T.2    Fujisawa, K.3    Nasu, K.4    Miyakawa, I.5
  • 13
    • 0036808985 scopus 로고    scopus 로고
    • Clinical implications of expression of ETS-1 related to angiogenesis in uterine cervical cancers
    • DOI 10.1093/annonc/mdf248
    • Fujimoto, J., I. Aoki, H. Toyoki, S. Khatun, and T. Tamaya. 2002. Clinical implications of expression of ETS-1 related to angiogenesis in uterine cervical cancers. Ann. Oncol. 13:1598-1604. (Pubitemid 35331457)
    • (2002) Annals of Oncology , vol.13 , Issue.10 , pp. 1598-1604
    • Fujimoto, J.1    Aoki, I.2    Toyoki, H.3    Khatun, S.4    Tamaya, T.5
  • 15
    • 16844384594 scopus 로고    scopus 로고
    • Stromelysin 3, Ets-1, and vascular endothelial growth factor expression in oral precancerous and cancerous lesions: Correlation with microvessel density, progression, and prognosis
    • Arora, S., J. Kaur, C. Sharma, M. Mathur, S. Bahadur, et al. 2005. Stromelysin 3, Ets-1, and vascular endothelial growth factor expression in oral precancerous and cancerous lesions: correlation with microvessel density, progression, and prognosis. Clin. Cancer Res. 11:2272-2284.
    • (2005) Clin. Cancer Res. , vol.11 , pp. 2272-2284
    • Arora, S.1    Kaur, J.2    Sharma, C.3    Mathur, M.4    Bahadur, S.5
  • 16
    • 0034907329 scopus 로고    scopus 로고
    • Ets-1 messenger RNA expression is a novel marker of poor survival in ovarian carcinoma
    • Davidson, B., R. Reich, I. Goldberg, W. Gotlieb, J. Kopolovic, et al. 2001. Ets-1 messenger RNA expression is a novel marker of poor survival in ovarian carcinoma. Clin. Cancer Res. 7:551-557.
    • (2001) Clin. Cancer Res. , vol.7 , pp. 551-557
    • Davidson, B.1    Reich, R.2    Goldberg, I.3    Gotlieb, W.4    Kopolovic, J.5
  • 18
    • 4444380264 scopus 로고    scopus 로고
    • Clinical implications of expression of ETS-1 related to angiogenesis in metastatic lesions of ovarian cancer
    • Fujimoto, J., I. Aoki, H. Toyoki, S. Khatun, E. Sato, et al. 2004. Clinical implications of expression of ETS-1 related to angiogenesis in metastatic lesions of ovarian cancer. Oncology. 66:420-428.
    • (2004) Oncology , vol.66 , pp. 420-428
    • Fujimoto, J.1    Aoki, I.2    Toyoki, H.3    Khatun, S.4    Sato, E.5
  • 19
    • 0032514673 scopus 로고    scopus 로고
    • Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site
    • Slupsky, C., L. Gentile, L. Donaldson, C. Mackereth, J. Seidel, et al. 1998. Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site. Proc. Natl. Acad. Sci. USA. 95:12129-12134.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 12129-12134
    • Slupsky, C.1    Gentile, L.2    Donaldson, L.3    Mackereth, C.4    Seidel, J.5
  • 20
    • 0030048767 scopus 로고    scopus 로고
    • Ras-mediated phosphorylation of a conserved threonine residue enhances the transactivation activities of c-Ets1 and c-Ets2
    • Yang, B., C. Hauser, G. Henkel, M. Colman, C. Beveren, et al. 1996. Ras-mediated phosphorylation of a conserved threonine residue enhances the transactivation activities of c-Ets1 and c-Ets2. Mol. Cell. Biol. 16:538-547.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 538-547
    • Yang, B.1    Hauser, C.2    Henkel, G.3    Colman, M.4    Beveren, C.5
  • 21
    • 0026860033 scopus 로고
    • Analysis of the DNA-binding and transcriptional activation properties of the Ets1 oncoprotein
    • Gegonne, A., B. Punyammalee, B. Rabault, R. Bosselut, S. Seneca, et al. 1992. Analysis of the DNA-binding and transcriptional activation properties of the Ets1 oncoprotein. New Biol. 4:512-519.
    • (1992) New Biol. , vol.4 , pp. 512-519
    • Gegonne, A.1    Punyammalee, B.2    Rabault, B.3    Bosselut, R.4    Seneca, S.5
  • 22
    • 0027967479 scopus 로고
    • Secondary structure of the ETS domain places murine Ets-1 in the superfamily of winged helix-turn-helix DNA-binding proteins
    • DOI 10.1021/bi00250a001
    • Donaldson, L., J. Petersen, B. Graves, and L. McIntosh. 1994. Secondary structure of the ETS domain places murine Ets-1 in the superfamily of winged helix-turn-helix DNA-binding proteins. Biochemistry. 33:13509-13516. (Pubitemid 24381911)
    • (1994) Biochemistry , vol.33 , Issue.46 , pp. 13509-13516
    • Donaldson, L.W.1    Petersen, J.M.2    Graves, B.J.3    McIntosh, L.P.4
  • 23
    • 0026729269 scopus 로고
    • Interaction of murine Ets-1 with GGA-binding sites establishes the ETS domain as a new DNA-binding motif
    • Nye, J., J. Petersen, C. Gunther, M. Jonsen, and B. Graves. 1992. Interaction of murine Ets-1 with GGA-binding sites establishes the ETS domain as a new DNA-binding motif. Genes Dev. 6:975-990.
    • (1992) Genes Dev. , vol.6 , pp. 975-990
    • Nye, J.1    Petersen, J.2    Gunther, C.3    Jonsen, M.4    Graves, B.5
  • 24
    • 0031298118 scopus 로고    scopus 로고
    • Correction of the NMR structure of the ETS1/DNA complex
    • Werner, M., G. Clore, C. Fisher, R. Fisher, L. Trinh, et al. 1997. Correction of the NMR structure of the ETS1/DNA complex. J. Biomol. NMR. 10:317-328.
    • (1997) J. Biomol. NMR , vol.10 , pp. 317-328
    • Werner, M.1    Clore, G.2    Fisher, C.3    Fisher, R.4    Trinh, L.5
  • 25
    • 0041848579 scopus 로고    scopus 로고
    • Sequence specific DNA binding of Ets-1 transcription factor: Molecular dynamics study of the Ets domain-DNA complexes
    • Obika, S., S. Reddy, and T. Bruice. 2003. Sequence specific DNA binding of Ets-1 transcription factor: molecular dynamics study of the Ets domain-DNA complexes. J. Mol. Biol. 331:345-359.
    • (2003) J. Mol. Biol. , vol.331 , pp. 345-359
    • Obika, S.1    Reddy, S.2    Bruice, T.3
  • 27
    • 0026730324 scopus 로고
    • An inhibitory carboxyl-terminal domain in Ets-1 and Ets-2 mediates differential binding of ETS family factors to promotor sequences of the MB-1 gene
    • Hagman, J., and R. Grosschedl. 1992. An inhibitory carboxyl-terminal domain in Ets-1 and Ets-2 mediates differential binding of ETS family factors to promotor sequences of the MB-1 gene. Proc. Natl. Acad. Sci. USA. 89:8889-8893.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 8889-8893
    • Hagman, J.1    Grosschedl, R.2
  • 28
    • 0026533890 scopus 로고
    • DNA-binding by c-Ets-1, but not v-Ets, is repressed by an intramolecular mechanism
    • Lim, F., N. Kraut, J. Frampton, and T. Graf. 1992. DNA-binding by c-Ets-1, but not v-Ets, is repressed by an intramolecular mechanism. EMBO J. 11:643-652.
    • (1992) EMBO J. , vol.11 , pp. 643-652
    • Lim, F.1    Kraut, N.2    Frampton, J.3    Graf, T.4
  • 29
    • 0026634171 scopus 로고
    • A novel modulator domain of ETS transcription factors
    • Wasylyk, C., J. Kerckaert, and B. Wasylyk. 1992. A novel modulator domain of ETS transcription factors. Genes Dev. 6:965-974.
    • (1992) Genes Dev. , vol.6 , pp. 965-974
    • Wasylyk, C.1    Kerckaert, J.2    Wasylyk, B.3
  • 30
    • 0029958777 scopus 로고    scopus 로고
    • Characterization of the cooperative function of inhibitory sequences in Ets-1
    • Jonsen, M., J. Petersen, Q. Xu, and B. Graves. 1996. Characterization of the cooperative function of inhibitory sequences in Ets-1. Mol. Cell. Biol. 16:2065-2073. (Pubitemid 26123726)
    • (1996) Molecular and Cellular Biology , vol.16 , Issue.5 , pp. 2065-2073
    • Jonsen, M.D.1    Petersen, J.M.2    Xu, Q.-P.3    Graves, B.J.4
  • 31
    • 21744436606 scopus 로고    scopus 로고
    • Variable control of Ets-1 DNA binding by multiple phosphates in an unstructured region
    • Pufall, M., G. Lee, M. Nelson, H. Kang, A. Velyvis, et al. 2005. Variable control of Ets-1 DNA binding by multiple phosphates in an unstructured region. Science. 309:142-145.
    • (2005) Science , vol.309 , pp. 142-145
    • Pufall, M.1    Lee, G.2    Nelson, M.3    Kang, H.4    Velyvis, A.5
  • 32
    • 0036441510 scopus 로고    scopus 로고
    • Autoinhibitory domains: Modular effectors of cellular regulation
    • Pufall, M., and B. Graves. 2002. Autoinhibitory domains: modular effectors of cellular regulation. Annu. Rev. Cell Dev. Biol. 18:421-462.
    • (2002) Annu. Rev. Cell Dev. Biol. , vol.18 , pp. 421-462
    • Pufall, M.1    Graves, B.2
  • 33
    • 0027956197 scopus 로고
    • The oncoprotein v-Ets is less selective in DNA binding than c-Ets-1 due to the C-terminal sequence change
    • Hahn, S., and B. Wasylyk. 1994. The oncoprotein v-Ets is less selective in DNA-binding than c-Ets-1 due to the C-terminal sequence change. Oncogene. 9:2499-2512. (Pubitemid 24254025)
    • (1994) Oncogene , vol.9 , Issue.9 , pp. 2499-2512
    • Hahn, S.L.1    Wasylyk, B.2
  • 34
    • 0033559972 scopus 로고    scopus 로고
    • Mutual activation of Ets-1 and AML1 DNA binding by direct interaction of their autoinhibitory domains
    • Kim, W., M. Sieweke, E. Ogawa, H. Wee, U. Englmeier, et al. 1999. Mutual activation of Ets-1 and AML1 DNA binding by direct interaction of their autoinhibitory domains. EMBO J. 18:1609-1620.
    • (1999) EMBO J. , vol.18 , pp. 1609-1620
    • Kim, W.1    Sieweke, M.2    Ogawa, E.3    Wee, H.4    Englmeier, U.5
  • 35
    • 0033988443 scopus 로고    scopus 로고
    • Auto-inhibition of Ets-1 is counteracted by DNA binding cooperativity with core-binding factor α2
    • Goetz, T., T. Gu, N. Speck, and B. Graves. 2000. Auto-inhibition of Ets-1 is counteracted by DNA binding cooperatively with core-binding factor α2. Mol. Cell. Biol. 20:81-90. (Pubitemid 30002550)
    • (2000) Molecular and Cellular Biology , vol.20 , Issue.1 , pp. 81-90
    • Goetz, T.L.1    Gu, T.-L.2    Speck, N.A.3    Graves, B.J.4
  • 36
    • 0027939420 scopus 로고
    • Calcium-induced phosphorylation of ETS1 inhibits its specific DNA binding activity
    • Rabault, B., and J. Ghysdael. 1994. Calcium-induced phosphorylation of ETS1 inhibits its specific DNA binding activity. J. Biol. Chem. 45:28143-28151. (Pubitemid 24354549)
    • (1994) Journal of Biological Chemistry , vol.269 , Issue.45 , pp. 28143-28151
    • Rabault, B.1    Ghysdael, J.2
  • 37
    • 0034141710 scopus 로고    scopus 로고
    • Phosphorylation represses Ets-1 DNA binding by reinforcing autoinhibition
    • Cowley, D., and B. Graves. 2000. Phosphorylation represses Ets-1 DNA binding by reinforcing autoinhibition. Genes Dev. 14:366-376. (Pubitemid 30106491)
    • (2000) Genes and Development , vol.14 , Issue.3 , pp. 366-376
    • Cowley, D.O.1    Graves, B.J.2
  • 38
    • 0036911237 scopus 로고    scopus 로고
    • Calcium regulation of GM-CSF by calmodulin-dependent kinase II phosphorylation of ETs1
    • DOI 10.1091/mbc.E02-03-0149
    • Liu, H., and T. Grundström. 2002. Calcium regulation of GM-CSF by calmodulin-dependent kinase II phosphorylation of Ets1. Mol. Biol. Cell. 13:4497-4507. (Pubitemid 35471201)
    • (2002) Molecular Biology of the Cell , vol.13 , Issue.12 , pp. 4497-4507
    • Liu, H.1    Grundstrom, T.2
  • 39
    • 33747592823 scopus 로고    scopus 로고
    • Graded regulation of the Kv2.1 potassium channel by variable phosphorylation
    • DOI 10.1126/science.1124254
    • Park, K., D. Mohapatra, H. Misonou, and J. Trimmer. 2006. Graded regulation of the Kv2.1 potassium channel by variable phosphorylation. Science. 313:976-979. (Pubitemid 44267390)
    • (2006) Science , vol.313 , Issue.5789 , pp. 976-979
    • Park, K.-S.1    Mohapatra, D.P.2    Misonou, H.3    Trimmer, J.S.4
  • 40
    • 0028874393 scopus 로고
    • Modulation of transcription factor Ets-1 DNA binding: DNA-induced unfolding of an β-helix
    • Petersen, J., J. Skalicky, L. Donaldson, L. McIntosh, T. Alber, et al. 1995. Modulation of transcription factor Ets-1 DNA binding: DNA-induced unfolding of an β-helix. Science. 269:1866-1869.
    • (1995) Science , vol.269 , pp. 1866-1869
    • Petersen, J.1    Skalicky, J.2    Donaldson, L.3    McIntosh, L.4    Alber, T.5
  • 41
    • 14844326275 scopus 로고    scopus 로고
    • The structural and dynamic basis of Ets-1 DNA binding autoinhibition
    • Lee, G., L. Donaldson, M. Pufall, H. Kang, I. Pot, et al. 2005. The structural and dynamic basis of Ets-1 DNA binding autoinhibition. J. Biol. Chem. 280:7088-7099.
    • (2005) J. Biol. Chem. , vol.280 , pp. 7088-7099
    • Lee, G.1    Donaldson, L.2    Pufall, M.3    Kang, H.4    Pot, I.5
  • 42
    • 0029048413 scopus 로고
    • Structure of Bam HI endonuclease bound to DNA: Partial folding and unfolding on DNA binding
    • Newman, M., T. Strzelecka, L. Dorner, I. Schildkraut, and A. Aggarwal. 1995. Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science. 269:656-663.
    • (1995) Science , vol.269 , pp. 656-663
    • Newman, M.1    Strzelecka, T.2    Dorner, L.3    Schildkraut, I.4    Aggarwal, A.5
  • 43
    • 0347928848 scopus 로고    scopus 로고
    • Structural analysis of the autoinhibition of Ets-1 and its role in protein partnerships
    • DOI 10.1074/jbc.M206327200
    • Garvie, C., M. Pufall, B. Graves, and C. Wolberger. 2002. Structural analysis of the autoinhibition of Ets-1 and its role in protein partnerships. J. Biol. Chem. 277:45529-45536. (Pubitemid 36159163)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.47 , pp. 45529-45536
    • Garvie, C.W.1    Pufall, M.A.2    Graves, B.J.3    Wolberger, C.4
  • 44
    • 0030038146 scopus 로고    scopus 로고
    • Structural coupling of the inhibitory regions flanking the ETS domain of murine Ets-1
    • Skalicky, J., L. Donaldson, J. Petersen, B. Graves, and L. McIntosh. 1996. Structural coupling of the inhibitory regions flanking the ETS domain of murine Ets-1. Protein Sci. 5:296-309. (Pubitemid 26054286)
    • (1996) Protein Science , vol.5 , Issue.2 , pp. 296-309
    • Skalicky, J.J.1    Donaldson, L.W.2    Petersen, J.M.3    Graves, B.J.4    McIntosh, L.P.5
  • 45
    • 0029670530 scopus 로고    scopus 로고
    • A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex
    • Kodandapani, R., F. Pio, C. Ni, G. Piccialli, M. Klemsz, et al. 1996. A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex. Nature. 380:456-460.
    • (1996) Nature , vol.380 , pp. 456-460
    • Kodandapani, R.1    Pio, F.2    Ni, C.3    Piccialli, G.4    Klemsz, M.5
  • 46
    • 0032135105 scopus 로고    scopus 로고
    • Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: Insights into DNA sequence discrimination by Ets proteins
    • Mo, Y., B. Vaessen, K. Johnston, and R. Marmorstein. 1998. Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: insights into DNA sequence discrimination by Ets proteins. Mol. Cell. 2:201-212.
    • (1998) Mol. Cell. , vol.2 , pp. 201-212
    • Mo, Y.1    Vaessen, B.2    Johnston, K.3    Marmorstein, R.4
  • 47
    • 0032512459 scopus 로고    scopus 로고
    • The structure of GABPα/β: An ETS domain ankyrin repeat heterodimer bound to DNA
    • Batchelor, A., D. Piper, F. de la Brousse, S. McKnight, and C. Wolberger. 1998. The structure of GABPα/β: an ETS domain ankyrin repeat heterodimer bound to DNA. Science. 279:1037-1041.
    • (1998) Science , vol.279 , pp. 1037-1041
    • Batchelor, A.1    Piper, D.2    De La Brousse, F.3    McKnight, S.4    Wolberger, C.5
  • 48
    • 0034031280 scopus 로고    scopus 로고
    • Structure of the Elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA
    • DOI 10.1038/74055
    • Mo, Y., B. Vaessen, K. Johnston, and R. Marmorstein. 2000. Structure of the Elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA. Nat. Struct. Biol. 7:292-297. (Pubitemid 30194452)
    • (2000) Nature Structural Biology , vol.7 , Issue.4 , pp. 292-297
    • Mo, Y.1    Vaessen, B.2    Johnston, K.3    Marmorstein, R.4
  • 49
    • 0035875907 scopus 로고    scopus 로고
    • The B-box dominates SAP-1-SRF interactions in the structure of the ternary complex
    • DOI 10.1093/emboj/20.12.3018
    • Hassler, M., and T. Richmond. 2001. The B-box dominates SAP-1-SRF interactions in the structure of the ternary complex. EMBO J. 20:3018-3028. (Pubitemid 32611989)
    • (2001) EMBO Journal , vol.20 , Issue.12 , pp. 3018-3028
    • Hassler, M.1    Richmond, T.J.2
  • 50
    • 0035697276 scopus 로고    scopus 로고
    • Structural studies of Ets-1/Pax5 complex formation on DNA
    • DOI 10.1016/S1097-2765(01)00410-5
    • Garvie, C., J. Hagman, and C. Wolberger. 2001. Structural studies of Ets-1/Pax5 complex formation on DNA. Mol. Cell. 8:1267-1276. (Pubitemid 34084998)
    • (2001) Molecular Cell , vol.8 , Issue.6 , pp. 1267-1276
    • Garvie, C.W.1    Hagman, J.2    Wolberger, C.3
  • 51
    • 0037127314 scopus 로고    scopus 로고
    • Inhibitory module of Ets-1 allosterically regulates DNA binding through a dipole-facilitated phosphate contact
    • Wang, H., L. McIntosh, and B. Graves. 2002. Inhibitory module of Ets-1 allosterically regulates DNA binding through a dipole-facilitated phosphate contact. J. Biol. Chem. 277:2225-2233.
    • (2002) J. Biol. Chem. , vol.277 , pp. 2225-2233
    • Wang, H.1    McIntosh, L.2    Graves, B.3
  • 53
    • 0030044420 scopus 로고    scopus 로고
    • Solution structure of the ETS domain from murine Ets-1: A winged helix-turn-helix DNA binding motif
    • Donaldson, L., J. Petersen, B. Graves, and L. McIntosh. 1996. Solution structure of the ETS domain from murine Ets-1: a winged helix-turn-helix DNA binding motif. EMBO J. 15:125-134.
    • (1996) EMBO J. , vol.15 , pp. 125-134
    • Donaldson, L.1    Petersen, J.2    Graves, B.3    McIntosh, L.4
  • 55
    • 0026095641 scopus 로고
    • Protonation of interacting residues in a protein by a Monte Carlo method: Application to lysozyme and photosynthetic reaction center
    • Beroza, P., D. Fredkin, M. Okamura, and G. Feher. 1990. Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and photosynthetic reaction center. Proc. Natl. Acad. Sci. USA. 88:5804-5808.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 5804-5808
    • Beroza, P.1    Fredkin, D.2    Okamura, M.3    Feher, G.4
  • 56
    • 0242396923 scopus 로고    scopus 로고
    • 3DNA: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
    • Lu, X., and W. Olson. 2003. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids Res. 31:5108-5121.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5108-5121
    • Lu, X.1    Olson, W.2
  • 57
  • 58
    • 0030059225 scopus 로고    scopus 로고
    • Ligand binding: Molecular mechanics calculation of the streptavidin-biotin rupture force
    • Grubmüller, H., B. Heymann, and P. Tavan. 1996. Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force. Science. 271:997-999.
    • (1996) Science , vol.271 , pp. 997-999
    • Grubmüller, H.1    Heymann, B.2    Tavan, P.3
  • 60
    • 4043179941 scopus 로고    scopus 로고
    • DNA and its counterions: A molecular dynamics study
    • Várnai, P., and K. Zakrzewska. 2004. DNA and its counterions: a molecular dynamics study. Nucleic Acids Res. 32:4269-4280.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4269-4280
    • Várnai, P.1    Zakrzewska, K.2
  • 61
    • 84986512474 scopus 로고
    • CHARMM: A program for macromolecular energy minimization and dynamics calculations
    • Brooks, B., R. Bruccoleri, B. Olafson, D. States, S. Swaninathan, et al. 1983. CHARMM: a program for macromolecular energy minimization and dynamics calculations. J. Comput. Chem. 4:187-217.
    • (1983) J. Comput. Chem. , vol.4 , pp. 187-217
    • Brooks, B.1    Bruccoleri, R.2    Olafson, B.3    States, D.4    Swaninathan, S.5
  • 62
    • 0348244547 scopus 로고    scopus 로고
    • All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data
    • Foloppe, N., and A. MacKerell. 2000. All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data. J. Comput. Chem. 21:86-104.
    • (2000) J. Comput. Chem. , vol.21 , pp. 86-104
    • Foloppe, N.1    MacKerell, A.2
  • 63
    • 0000214231 scopus 로고    scopus 로고
    • All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution
    • MacKerell, A., and N. Banavali. 2000. All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution. J. Comput. Chem. 21:105-120.
    • (2000) J. Comput. Chem. , vol.21 , pp. 105-120
    • MacKerell, A.1    Banavali, N.2
  • 64
    • 3142714765 scopus 로고    scopus 로고
    • Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
    • MacKerell, A., M. Feig, and C. Brooks. 2004. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J. Comput. Chem. 25:1400-1415.
    • (2004) J. Comput. Chem. , vol.25 , pp. 1400-1415
    • MacKerell, A.1    Feig, M.2    Brooks, C.3
  • 66
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, J., G. Ciccotti, and H. Berendsen. 1977. Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 23:327-341.
    • (1977) J. Comput. Phys. , vol.23 , pp. 327-341
    • Ryckaert, J.1    Ciccotti, G.2    Berendsen, H.3
  • 67
    • 0001538909 scopus 로고
    • Canonical dynamics: Equilibrium phase-space distributions
    • Hoover, W. 1985. Canonical dynamics: equilibrium phase-space distributions. Phys. Rev. A. 31:1695-1697.
    • (1985) Phys. Rev. A , vol.31 , pp. 1695-1697
    • Hoover, W.1
  • 68
    • 36449000062 scopus 로고
    • Nosé-Hoover chains. The canonical ensemble via continuous dynamics
    • Martyna, G., M. Tuckerman, and M. Klein. 1992. Nosé-Hoover chains. The canonical ensemble via continuous dynamics. J. Chem. Phys. 97:2635-2643.
    • (1992) J. Chem. Phys. , vol.97 , pp. 2635-2643
    • Martyna, G.1    Tuckerman, M.2    Klein, M.3
  • 69
    • 0000026966 scopus 로고    scopus 로고
    • Explicit reversible integrators for extended systems dynamics
    • Martyna, G., M. Tuckerman, D. Tobias, and M. Klein. 1996. Explicit reversible integration algorithms for extended systems. Mol. Phys. 87:1117-1157. (Pubitemid 126453963)
    • (1996) Molecular Physics , vol.87 , Issue.5 , pp. 1117-1157
    • Martyna, G.J.1    Tuckerman, M.E.2    Tobias, D.J.3    Klein, M.L.4
  • 70
    • 0012934756 scopus 로고    scopus 로고
    • Local block bootstrap
    • DOI 10.1016/S1631-073X(02)02578-5, PII S1631073X02025785
    • Paparoditis, E., and D. Politis. 2002. Local block bootstrap. CR Acad. Sci. I. 335:959-962. (Pubitemid 36645916)
    • (2002) Comptes Rendus Mathematique , vol.335 , Issue.11 , pp. 959-962
    • Paparoditis, E.1    Politis, D.N.2
  • 71
    • 57749199286 scopus 로고    scopus 로고
    • Testing a correlation coefficient's significance
    • Kubinger, K., D. Rasch, and M. Simeckova. 2007. Testing a correlation coefficient's significance. Psychol. Sci. 49:74-87.
    • (2007) Psychol. Sci. , vol.49 , pp. 74-87
    • Kubinger, K.1    Rasch, D.2    Simeckova, M.3
  • 72
    • 0026076090 scopus 로고
    • Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations
    • Ichiye, T., and M. Karplus. 1991. Collective motions in proteins: a covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations. Proteins. 11:205-217.
    • (1991) Proteins , vol.11 , pp. 205-217
    • Ichiye, T.1    Karplus, M.2
  • 75
    • 0000127140 scopus 로고
    • Method for estimating the configurational entropy of macromolecules
    • Karplus, M., and J. Kushick. 1981. Method for estimating the configurational entropy of macromolecules. Macromolecules. 14:325-332.
    • (1981) Macromolecules , vol.14 , pp. 325-332
    • Karplus, M.1    Kushick, J.2
  • 76
    • 0000118827 scopus 로고
    • Harmonic and quasiharmonic descriptions of crambin
    • Teeter, M., and D. Case. 1990. Harmonic and quasiharmonic descriptions of crambin. J. Phys. Chem. 94:8091-8097.
    • (1990) J. Phys. Chem. , vol.94 , pp. 8091-8097
    • Teeter, M.1    Case, D.2
  • 77
    • 0346216028 scopus 로고    scopus 로고
    • Principal components of the protein dynamical transition
    • Tournier, A., and J. Smith. 2003. Principal components of the protein dynamical transition. Phys. Rev. Lett. 91:208106.
    • (2003) Phys. Rev. Lett. , vol.91 , pp. 208106
    • Tournier, A.1    Smith, J.2
  • 78
    • 0041819710 scopus 로고    scopus 로고
    • Relative stability of protein structures determined by x-ray crystallography or NMR spectroscopy: A molecular dynamics simulation study
    • Fan, H., and A. Mark. 2003. Relative stability of protein structures determined by x-ray crystallography or NMR spectroscopy: a molecular dynamics simulation study. Proteins. 53:111-120.
    • (2003) Proteins , vol.53 , pp. 111-120
    • Fan, H.1    Mark, A.2
  • 79
    • 0025732376 scopus 로고
    • Simulation analysis of the stability mutant R96H of T4 lysozyme
    • Tidor, B., and M. Karplus. 1991. Simulation analysis of the stability mutant R96H of T4 lysozyme. Biochemistry. 30:3217-3228.
    • (1991) Biochemistry , vol.30 , pp. 3217-3228
    • Tidor, B.1    Karplus, M.2
  • 80
    • 0017881332 scopus 로고
    • The α-helix dipole and the properties of proteins
    • Hol, W., P. van Duijnen, and H. Berendsen. 1978. The α-helix dipole and the properties of proteins. Nature. 273:443-446. (Pubitemid 8356502)
    • (1978) Nature , vol.273 , Issue.5662 , pp. 443-446
    • Hol, W.G.J.1    Van Duijnen, P.T.2    Berendsen, H.J.C.3
  • 81
    • 0020172455 scopus 로고
    • α-Helix dipole model and electrostatic stabilization of 4-α-helical proteins
    • Sheridan, R., R. Levy, and F. Salemme. 1982. α-Helix dipole model and electrostatic stabilization of 4-α-helical proteins. Proc. Natl. Acad. Sci. USA. 79:4545-4549.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 4545-4549
    • Sheridan, R.1    Levy, R.2    Salemme, F.3
  • 82
    • 20444424211 scopus 로고    scopus 로고
    • Molecular dynamics simulations of protein G challenge NMR-derived correlated backbone motions
    • DOI 10.1002/anie.200462957
    • Lange, O., H. Grubmüller, and B. de Groot. 2005. Molecular dynamics simulations of protein G challenge NMR-derived correlated backbone motions. Angew. Chem. Int. Ed. 44:3394-3399. (Pubitemid 40793592)
    • (2005) Angewandte Chemie - International Edition , vol.44 , Issue.22 , pp. 3394-3399
    • Lange, O.F.1    Grubmuller, H.2    De Groot, B.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.