Genetic characterization of oligopeptide uptake systems in Sinorhizobium meliloti

FEMS Microbiology Letters

Volumn 293, Issue 2, 2009, Pages 177-187

  Nogales, Joaquina ^a   Muñoz, Socorro ^a   Olivares, José ^a   Sanjuán, Juan ^a  

^a CSIC   (Spain)

Author keywords

Gene expression; Legume symbiosis; Oligopeptide transporters; Rhizobia

Indexed keywords

ABC TRANSPORTER; BIALAPHOS; OLIGOPEPTIDE; TETRAPEPTIDE;

ARTICLE; AUTOREGULATION; BACTERIAL STRAIN; GENETIC ANALYSIS; MUTANT; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; SINORHIZOBIUM MELILOTI;

ATP-BINDING CASSETTE TRANSPORTERS; BACTERIAL PROTEINS; BETA-GALACTOSIDASE; DNA TRANSPOSABLE ELEMENTS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENE KNOCKOUT TECHNIQUES; GENES, REPORTER; MEDICAGO SATIVA; MEMBRANE TRANSPORT PROTEINS; MUTAGENESIS, INSERTIONAL; OLIGOPEPTIDES; SINORHIZOBIUM MELILOTI; SUBSTRATE SPECIFICITY;

MEDICAGO SATIVA; SINORHIZOBIUM MELILOTI;

EID: 62549149401     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2009.01527.x     Document Type: Article

References (49)

1. Abouhamad WN Manson MD (1994) The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent expressión. Mol Microbiol 14 : 1077 1092.
2. Abouhamad WN, Manson M, Gibson MM Higgins CF (1991) Peptide transport and chemotaxis in Escherichia coli and Salmonella typhimurium: characterization of the dipeptide permease (Dpp) and the dipeptide-binding protein. Mol Microbiol 5 : 1035 1047.
3. Becker A, Schmidt M, Jäger W Pühler A (1995) New gentamicin-resistance and lacZ promoter-probe cassettes suitable for insertion mutagenesis and generation of transcriptional fusions. Gene 162 : 37 39.
4. Beringer JE (1974) R factor transfer in Rhizobium leguminosarum. J Gen Microbiol 84 : 188 198.
5. Carter RA, Yeoman KH, Klein A, Hosie AH, Sawers G, Poole PS Johnston AW (2002) dpp genes of Rhizobium leguminosarum specify uptake of delta-aminolevulinic acid. Mol Plant Microbe In 15 : 69 74.
6. Casadesús J Olivares J (1979) Rough and fine linkage mapping of the Rhizobium meliloti chromosome. Mol Gen Genet 174 : 203 209.
7. Day DA, Poole PS, Tyerman SD Rosendahl L (2001) Ammonia and amino acid transport across symbiotic membranes in nitrogen-fixing legume nodules. Cell Mol Life Sci 58 : 61 71.
8. Detmers FJ, Lanfermeijer FC Poolman B (2001) Peptides and ATP binding cassette peptide transporters. Res Microbiol 152 : 245 258.
9. Ditta G, Schmidhauser T, Yakobson E, Lu P, Liang XW, Finlay DR, Guiney D Helinski DR (1985) Plasmids related to the broad host range vector, pRK290, useful for gene cloning and the monitoring gene expression. Plasmid 13 : 149 153.
10. Djordjevic MA (2004) Sinorhizobium meliloti metabolism in the root nodules: a proteomic perspective. Proteomics 4 : 1859 1872.
11. Djordjevic MA, Chen HC, Natera S et al 2003) A global analysis of protein expression profiles in Sinorhizobium meliloti: discovery of new genes for nodules occupancy and stress adaptation. Mol Plant Microbe In 16 : 508 524.
12. 2-fixing endosymbiont Sinorhizobium meliloti. P Natl Acad Sci USA 98 : 9889 9894.
13. Foucaud C, Kunji ER, Hagting A, Richard J, Konings WN, Desmazeaud M Poolman B (1995) Specificity of peptide transport systems in Lactococcus lactis: evidence for a third system which transports hydrophobic di- and tripeptides. J Bacteriol 177 : 4652 4657.
14. Galibert F, Finan TM, Long SR et al 2001) The composite genome of the legume symbiont Sinorhizobium meliloti. Science 293 : 668 672.
15. Gibson MM, Price M Higgins CF (1984) Genetic characterization and molecular cloning of the tripeptide permease (tpp) genes of Salmonella typhimurium. J Bacteriol 160 : 122 130.
16. Hagting A, Kunji ER, Leenhouts KJ, Poolman B Konings WN (1994) The di- and tripeptides transport protein of Lactococcus lactis. A new type of bacterial peptide transporter. J Biol Chem 269 : 11391 11399.
17. Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166 : 557 580.
18. Havarstein LS, Diep DB Nes IF (1995) A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export. Mol Microbiol 16 : 229 240.
19. Higgins CF (2001) ABC transporters: physiology, structure and mechanism - an overview. Res Microbiol 152 : 205 210.
20. Higgins CF Gibson MM (1986) Peptide transport in bacteria. Meth Enzymol 125 : 365 377.
21. Holland IB Blight MA (1999) ABC-ATPases, adaptable energy generators fuelling transmembrane movement of a variety of molecules in organisms from bacteria to humans. J Mol Biol 293 : 381 399.
22. Kaneko T, Nakamura Y, Sato S et al 2000) Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. DNA Res 7 : 331 338.
23. Lazazzera BA (2001) The intracellular function of extracellular signalling peptides. Peptides 22 : 1519 1527.
24. Lazazzera BA, Solomon JM Grossman AD (1997) An exported peptide functions intracellularly to contribute to cell density signalling in Bacillus subtilis. Cell 89 : 917 925.
25. Leonard BA, Podbielski A, Hedberg PJ Dunny GM (1996) Enterococcus faecalis pheromone binding protein, PrgZ, recruits a chromosomal oligopeptide permease system to import sex pheromone cCF10 for induction of conjugation. P Natl Acad Sci USA 93 : 260 264.
26. Levdikov VM, Blagova EV, Brannigan JA, Wright L, Vagin AA Wilkinson AJ (2005) The structure of the oligopeptide-binding protein, AppA, from Bacillus subtilis in complex with a nonapeptide. J Mol Biol 345 : 879 892.
27. Mauchline TH, Fowler JE, East AK, Sartor AL, Zaheer R, Hosie AHF, Poole PS Finan TM (2006) Mapping the Sinorhizobium meliloti 1021 solute binding protein-dependent transportome. P Natl Acad Sci USA 103 : 17933 17938.
28. Mergaert P, Nikovics K, Kelemen Z, Maunoury N, Vaubert D, Kondorosi A Kondorosi E (2003) A novel family in Medicago truncatula consisting of more than 300 nodule-specific genes coding for small, secreted polypeptides with conserved cysteine motifs. Plant Physiol 132 : 161 173.
29. Mergaert P, Uchiumi T, Alunni B et al 2006) Eukaryotic control on bacterial cell cycle and differentiation in the Rhizobium-legume symbiosis. P Natl Acad Sci USA 103 : 5230 5235.
30. Miller JH (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
31. Nodwell JR, McGovern K Losick R (1996) An oligopeptide permease responsible for the import of an extracellular signal governing aerial mycelium formation in Streptomyces coelicolor. Mol Microbiol 22 : 881 893.
32. Olivares J, Casadesus J Bedmar EJ (1980) Method for testing degree of infectivity of Rhizobium meliloti strains. Appl Environ Microb 39 : 967 970.
33. Park HS, Shin SK, Yang YY, Kwon HJ Suh JW (2005) Accumulation of S-adenosylmethionine induced oligopeptide transporters including BldK to regulate differentiation events in Streptomyces coelicolor M145. FEMS Microbiol Lett 249 : 199 206.
34. Perego M, Higgins CF, Pearce SR, Gallagher MP Hoch JA (1991) The oligopeptide transport system of Bacillus subtilis plays a role in the initiation of sporulation. Mol Microbiol 5 : 173 185.
35. Poole PS Allaway DA (2000) Carbon and nitrogen metabolism in Rhizobium. Adv Microb Physiol 43 : 117 163.
36. Prentki P Krisch HM (1984) In vitro insertional mutagenesis with a selectable DNA fragment. Gene 29 : 303 312.
37. Robertsen BK, Aiman P, Darwill AG, Mcneil M Albersheim P (1981) The structure of acidic extracellular polysaccharides secrete by Rhizobium leguminosarum and Rhizobium trifolii. Plant Physiol 67 : 389 400.
38. Sambrook J, Fritsch EF Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
39. Sanz Y, Toldra F, Renault P Poolman B (2003) Specificity of the second binding protein of the peptide ABC-transporter (Dpp) of Lactococcus lactis IL1403. FEMS Microbiol Lett 227 : 33 38.
40. Saurin W, Hofnung M Dassa E (1999) Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. J Mol Evol 48 : 22 41.
41. Schäfer A, Tauch A, Jäger W, Kalinowski J, Thierbach G Pühler A (1994) Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145 : 69 73.
42. Simon R, Priefer U Pühler A (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria. Biotechnology 1 : 784 791.
43. Smith MW Payne JW (1992) Expression of periplasmic binding proteins for peptide transport is subject to negative regulation by phosphate limitation in Escherichia coli. FEMS Microbiol Lett 79 : 183 190.
44. Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98 : 503 517.
45. Spaink HP, Okker JH, Wijffelman CA, Pees E Lugtenberg BJJ (1987) Promoters in the nodulation region of Rhizobium leguminosarum Sym plasmid pRL1JI. Plant Mol Biol 9 : 27 39.
46. Tynkkynen S, Buist G, Kunji E, Kok J, Poolman B, Venema G Haandrikman A (1993) Genetic and biochemical characterization of the oligopeptide transport system of Lactococcus lactis. J Bacteriol 175 : 7523 7532.
47. Vos K, Braeken K, Fauvart M, Ndayizeye M, Verhaert J, Zachurzok S, Lambrichts I Michiels J (2007) The Rhizobium etli opt operon is required for symbiosis and stress resistance. Environ Microbiol 9 : 1665 1674.
48. Wood D, Setubal WJC, Kaul R et al 2001) The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science 294 : 2317 2323.
49. Yanisch-Perron C, Vieira J Messing J (1985) Improved M13 phage cloning vectors and strains: nucleotide sequences of the M13mp 18 and pUC19 vectors. Gene 33 : 103 119.