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Volumn 4, Issue , 2009, Pages

A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); CANDIDATUS KUENENIA STUTTGARTIENSIS; DELTAPROTEOBACTERIA; DESULFOTALEA PSYCHROPHILA;

EID: 62249157789     PISSN: None     EISSN: 17456150     Source Type: Journal    
DOI: 10.1186/1745-6150-4-8     Document Type: Article
Times cited : (32)

References (52)
  • 2
    • 0036330610 scopus 로고    scopus 로고
    • Factors controlling anaerobic ammonium oxidation with nitrite in marine sediments
    • 124030 12147475 10.1128/AEM.68.8.3802-3808.2002
    • Dalsgaard T Thamdrup B Factors controlling anaerobic ammonium oxidation with nitrite in marine sediments Appl Environ Microbiol 2002, 68:3802-3808. 124030 12147475 10.1128/AEM.68.8.3802-3808.2002
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3802-3808
    • Dalsgaard, T.1    Thamdrup, B.2
  • 7
    • 33846946594 scopus 로고    scopus 로고
    • Start-up of reactors for anoxic ammonium oxidation: Experiences from the first full-scale anammox reactor in Rotterdam
    • 10.1016/j.watres.2007.03.044
    • Star van der WRL Abma WR Bloomers D Mulder JW Tokutomi T Strous M Picioreanu C van Loosdrecht MCM Start-up of reactors for anoxic ammonium oxidation: Experiences from the first full-scale anammox reactor in Rotterdam Wat Res 2007, 41:4149-4163. 10.1016/j.watres.2007.03.044
    • (2007) Wat Res , vol.41 , pp. 4149-4163
    • Star, W.R.L.1    Abma, W.R.2    Bloomers, D.3    Mulder, J.W.4    Tokutomi, T.5    Strous, M.6    Picioreanu, C.7    van Loosdrecht, M.C.M.8
  • 8
    • 0030795645 scopus 로고    scopus 로고
    • Metabolic pathway of anaerobic ammonium oxidation on basis of 15N-studies in a fluidized bed reactor
    • Graaf van de AA de Bruin P Robertson LA Jetten MSM Kuenen JG Metabolic pathway of anaerobic ammonium oxidation on basis of 15N-studies in a fluidized bed reactor Microbiology 1997, 143:2415-2421.
    • (1997) Microbiology , vol.143 , pp. 2415-2421
    • Graaf, A.A.1    de Bruin, P.2    Robertson, L.A.3    Jetten, M.S.M.4    Kuenen, J.G.5
  • 9
    • 0033050649 scopus 로고    scopus 로고
    • Key physiology of anaerobic ammonium oxidation
    • 91484 10388731
    • Strous M Kuenen JG Jetten MSM Key physiology of anaerobic ammonium oxidation Appl Environ Microbiol 1999, 65:3248-3250. 91484 10388731
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3248-3250
    • Strous, M.1    Kuenen, J.G.2    Jetten, M.S.M.3
  • 10
    • 38749146551 scopus 로고    scopus 로고
    • Linking ultrastructure and function in four genera of anaerobic ammonium-oxidizing bacteria: Cell plan, glycogen storage and localization of cytochrome c protiens
    • 2223682 17993524 10.1128/JB.01449-07
    • van Niftrik L Geerts WJC van Donselaar EG Humbel BM Webb RI Fuerst JA Verkleij AJ Jetten MSM Strous M Linking ultrastructure and function in four genera of anaerobic ammonium-oxidizing bacteria: Cell plan, glycogen storage and localization of cytochrome c protiens J Bacteriol 2008, 190:708-717. 2223682 17993524 10.1128/JB.01449-07
    • (2008) J Bacteriol , vol.190 , pp. 708-717
    • van Niftrik, L.1    Geerts, W.J.C.2    van Donselaar, E.G.3    Humbel, B.M.4    Webb, R.I.5    Fuerst, J.A.6    Verkleij, A.J.7    Jetten, M.S.M.8    Strous, M.9
  • 13
    • 23844470172 scopus 로고    scopus 로고
    • Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox)
    • 10.1111/j.1742-4658.2005.04842.x 16098207
    • Sinninghe Damsté JS Rijpstra WIC Geenevasen JAJ Strous M Jetten MSM Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox) FEBS J 2005, 272:4270-4283. 10.1111/j.1742-4658.2005.04842.x 16098207
    • (2005) FEBS J , vol.272 , pp. 4270-4283
    • Sinninghe Damsté, J.S.1    Rijpstra, W.I.C.2    Geenevasen, J.A.J.3    Strous, M.4    Jetten, M.S.M.5
  • 14
    • 33644948255 scopus 로고    scopus 로고
    • Enantioselective synthesis of pentacycloanammoxic acid
    • 10.1021/ja058370g 16522072
    • Mascitti V Corey EJ Enantioselective synthesis of pentacycloanammoxic acid J Am Chem Soc 2006, 128:3118-3119. 10.1021/ja058370g 16522072
    • (2006) J Am Chem Soc , vol.128 , pp. 3118-3119
    • Mascitti, V.1    Corey, E.J.2
  • 15
    • 1542413709 scopus 로고
    • Laballenic Acid. A New Allenic Acid from Leonotis Nepetaefolia Seed Oil
    • 10.1021/jo01023a055
    • Bagby MO Smith CR Wolff IA Laballenic Acid. A New Allenic Acid from Leonotis Nepetaefolia Seed Oil J Org Chem 1965, 30:4227-4229. 10.1021/ jo01023a055
    • (1965) J Org Chem , vol.30 , pp. 4227-4229
    • Bagby, M.O.1    Smith, C.R.2    Wolff, I.A.3
  • 16
    • 0141518524 scopus 로고    scopus 로고
    • Novel halo-oxo-allenic fatty ester derivatives from epoxidized methyl santalbate (methyl trans-11-octadecen-9-ynoate)
    • 10.1016/S0009-3084(03)00071-9 14499468
    • Jie MSFL Lau MML Lam CNW Alam MS Metzger JO Biermann U Novel halo-oxo-allenic fatty ester derivatives from epoxidized methyl santalbate (methyl trans-11-octadecen-9-ynoate) Chem Phys Lipids 2003, 125:93-101. 10.1016/S0009-3084(03)00071-9 14499468
    • (2003) Chem Phys Lipids , vol.125 , pp. 93-101
    • Jie, M.S.F.L.1    Lau, M.M.L.2    Lam, C.N.W.3    Alam, M.S.4    Metzger, J.O.5    Biermann, U.6
  • 17
    • 0002114080 scopus 로고    scopus 로고
    • A new allenic fatty acid in Phlomis (Lamiaceae) seed oil
    • 10.1002/lipi.19970990304
    • Aitzetmuller K Tsevegsuren N Vosmann K A new allenic fatty acid in Phlomis (Lamiaceae) seed oil Fett-Lipid 1997, 99:74-78. 10.1002/ lipi.19970990304
    • (1997) Fett-Lipid , vol.99 , pp. 74-78
    • Aitzetmuller, K.1    Tsevegsuren, N.2    Vosmann, K.3
  • 18
    • 0032705302 scopus 로고    scopus 로고
    • Psychrophilic sulfate-reducing bacteria isolated from permanently cold Arctic marine sediments: Description of Desulfofrigrus oceanense gen. nov., sp nov., Desulfofrigus fragile sp nov., Desulfofaba gelida gen. nov., sp nov., Desulfotalea psychrophila gen. nov., sp nov and Desulfotalea arctica sp nov
    • 10555345
    • Knoblauch C Sahm K Jorgensen BB Psychrophilic sulfate-reducing bacteria isolated from permanently cold Arctic marine sediments: Description of Desulfofrigrus oceanense gen. nov., sp nov., Desulfofrigus fragile sp nov., Desulfofaba gelida gen. nov., sp nov., Desulfotalea psychrophila gen. nov., sp nov and Desulfotalea arctica sp nov Int J Syst Bacteriol 1999, 49:1631-1643. 10555345
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 1631-1643
    • Knoblauch, C.1    Sahm, K.2    Jorgensen, B.B.3
  • 20
    • 47049093318 scopus 로고    scopus 로고
    • Singulisphaera acidiphila gen. nov., sp. nov., a Non-Filamentous, Isosphaera-like Panctomycete from Acidic Northern Wetlands
    • 10.1099/ijs.0.65593-0
    • Kulichevskaya IS Ivanova AO Baulina OI Bodelier PLE Sinninghe Damsté JS Dedysh SN Singulisphaera acidiphila gen. nov., sp. nov., a Non-Filamentous, Isosphaera-like Panctomycete from Acidic Northern Wetlands Int J Syst Evol Micr 2008, 58:1186-1193. 10.1099/ ijs.0.65593-0
    • (2008) Int J Syst Evol Micr , vol.58 , pp. 1186-1193
    • Kulichevskaya, I.S.1    Ivanova, A.O.2    Baulina, O.I.3    Bodelier, P.L.E.4    Sinninghe Damsté, J.S.5    Dedysh, S.N.6
  • 21
    • 22244466130 scopus 로고    scopus 로고
    • The structural biology of type II fatty acid biosynthesis
    • 10.1146/annurev.biochem.74.082803.133524 15952903
    • White SW Zheng J Zhang YM Rock CO The structural biology of type II fatty acid biosynthesis Ann Rev Biochem 2005, 74:791-831. 10.1146/ annurev.biochem.74.082803.133524 15952903
    • (2005) Ann Rev Biochem , vol.74 , pp. 791-831
    • White, S.W.1    Zheng, J.2    Zhang, Y.M.3    Rock, C.O.4
  • 22
    • 0018969670 scopus 로고
    • Beta-ketoacyl-acyl carrier protein synthase-II of Escherichia coli - Evidence for function in the thermal regulation of fatty-acid synthesis
    • 6988423
    • Garwin JL Klages AL Cronan JE Beta-ketoacyl-acyl carrier protein synthase-II of Escherichia coli - evidence for function in the thermal regulation of fatty-acid synthesis J Biol Chem 1980, 255:3263-3265. 6988423
    • (1980) J Biol Chem , vol.255 , pp. 3263-3265
    • Garwin, J.L.1    Klages, A.L.2    Cronan, J.E.3
  • 23
    • 0016756653 scopus 로고
    • Ketoacyl-acyl carrier protein synthetase - Characterization of the acyl-enzyme intermediate
    • 237913
    • D'Agnolo G Rosenfeld IS Vagelos PR Ketoacyl-acyl carrier protein synthetase - characterization of the acyl-enzyme intermediate J Biol Chem 1975, 250:5283-5288. 237913
    • (1975) J Biol Chem , vol.250 , pp. 5283-5288
    • D'Agnolo, G.1    Rosenfeld, I.S.2    Vagelos, P.R.3
  • 24
    • 0030033704 scopus 로고    scopus 로고
    • Regulation of fatty acid elongation and initiation by acyl-acyl carrier protein in Escherichia coli
    • 10.1074/jbc.271.4.1833 8567624
    • Heath RJ Rock CO Regulation of fatty acid elongation and initiation by acyl-acyl carrier protein in Escherichia coli J Biol Chem 1996, 271:1833-1836. 10.1074/jbc.271.4.1833 8567624
    • (1996) J Biol Chem , vol.271 , pp. 1833-1836
    • Heath, R.J.1    Rock, C.O.2
  • 26
    • 0034841061 scopus 로고    scopus 로고
    • Adenosylmethionine-dependent iron-sulfur enzymes: Versatile clusters in a radical new role
    • 10.1007/s007750100210 11315557
    • Cheek J Broderick JB Adenosylmethionine-dependent iron-sulfur enzymes: versatile clusters in a radical new role J Biol Inorg Chem 2001, 6:209-226. 10.1007/s007750100210 11315557
    • (2001) J Biol Inorg Chem , vol.6 , pp. 209-226
    • Cheek, J.1    Broderick, J.B.2
  • 27
    • 0037399004 scopus 로고    scopus 로고
    • The generation of 5′-deoxyadenosyl radicals by adenosylmethionine-dependent radical enzymes
    • 10.1016/S1367-5931(03)00022-X 12714049
    • Jarrett JT The generation of 5′-deoxyadenosyl radicals by adenosylmethionine-dependent radical enzymes Curr Opin Chem Biol 2003, 7:174-182. 10.1016/S1367-5931(03)00022-X 12714049
    • (2003) Curr Opin Chem Biol , vol.7 , pp. 174-182
    • Jarrett, J.T.1
  • 28
    • 0035282866 scopus 로고    scopus 로고
    • Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: Functional characterization using new analysis and information visualization methods
    • 29726 11222759 10.1093/nar/29.5.1097
    • Sofia HJ Chen G Hetzler BG Reyes-Spindola JF Miller NE Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: Functional characterization using new analysis and information visualization methods Nucleic Acids Res 2001, 29:1097-1106. 29726 11222759 10.1093/nar/ 29.5.1097
    • (2001) Nucleic Acids Res , vol.29 , pp. 1097-1106
    • Sofia, H.J.1    Chen, G.2    Hetzler, B.G.3    Reyes-Spindola, J.F.4    Miller, N.E.5
  • 29
    • 62249152205 scopus 로고    scopus 로고
    • PEDANT http://pedant.gsf.de
    • PEDANT
  • 33
    • 84874034597 scopus 로고    scopus 로고
    • NCBI Blast http://www.ncbi.nlm.nih.gov/blast
    • NCBI Blast
  • 34
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • 10.1093/bib/5.2.150
    • Kumar S Tamura K Nei M MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinf 2004, 5:150-163. 10.1093/bib/5.2.150
    • (2004) Brief Bioinf , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 35
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 308517 7984417 10.1093/nar/22.22.4673
    • Thompson JD Higgins DG Gibson TJ Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22:4673-4680. 308517 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 42
    • 33745884710 scopus 로고    scopus 로고
    • Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometry
    • 10.1002/rcm.2572 16767688
    • Hopmans EC Kienhuis MVM Rattray JE Jaeschke A Schouten S Sinninghe Damsté JS Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometry Rapid Commun Mass Spectrom 2006, 20:2099-2103. 10.1002/rcm.2572 16767688
    • (2006) Rapid Commun Mass Spectrom , vol.20 , pp. 2099-2103
    • Hopmans, E.C.1    Kienhuis, M.V.M.2    Rattray, J.E.3    Jaeschke, A.4    Schouten, S.5    Sinninghe Damsté, J.S.6
  • 44
    • 0031916619 scopus 로고    scopus 로고
    • Molecular cloning, expression, and characterization of the genes encoding the two essential protein components of Micrococcus luteus B-P 26 hexaprenyl diphosphate synthase
    • 107062 9515931
    • Shimizu N Koyama T Ogura K Molecular cloning, expression, and characterization of the genes encoding the two essential protein components of Micrococcus luteus B-P 26 hexaprenyl diphosphate synthase J Bacteriol 1998, 180:1578-1581. 107062 9515931
    • (1998) J Bacteriol , vol.180 , pp. 1578-1581
    • Shimizu, N.1    Koyama, T.2    Ogura, K.3
  • 46
    • 0001155794 scopus 로고    scopus 로고
    • Classification of terpenoids according to the methylerythritolphosphate or the mevalonate pathway with natural 12C/13C isotope ratios: Dynamic allocation of resources in induced plants
    • 10.1002/1521-3773(20010601)40:11<2091::AID-ANIE2091>3.0.CO;2-5
    • Jux A Gleixner G Boland W Classification of terpenoids according to the methylerythritolphosphate or the mevalonate pathway with natural 12C/13C isotope ratios: Dynamic allocation of resources in induced plants Angew Chem Int Edit 2001, 40:2091-2093. 10.1002/ 1521-3773(20010601)40:11<2091::AID-ANIE2091>3.0.CO;2-5
    • (2001) Angew Chem Int Edit , vol.40 , pp. 2091-2093
    • Jux, A.1    Gleixner, G.2    Boland, W.3
  • 47
    • 84928547816 scopus 로고    scopus 로고
    • Fractionation of the isotopes of carbon and hydrogen in biosynthetic processes
    • 10.2138/gsrmg.43.1.225
    • Hayes JM Fractionation of the isotopes of carbon and hydrogen in biosynthetic processes Rev Miner Geochem 2001, 43:225-277. 10.2138/ gsrmg.43.1.225
    • (2001) Rev Miner Geochem , vol.43 , pp. 225-277
    • Hayes, J.M.1
  • 48
    • 33750548650 scopus 로고    scopus 로고
    • They came from the deep: Syntheses, applications, and biology of ladderanes
    • 10.2174/138527206778742678
    • Nouri DH Tantillo DJ They came from the deep: Syntheses, applications, and biology of ladderanes Curr Org Chem 2006, 10:2055-2074. 10.2174/ 138527206778742678
    • (2006) Curr Org Chem , vol.10 , pp. 2055-2074
    • Nouri, D.H.1    Tantillo, D.J.2
  • 49
    • 0028985652 scopus 로고
    • A new n-C31:9 polyene hydrocarbon from Antarctic bacteria
    • 10.1111/j.1574-6968.1995.tb07369.x
    • Nichols DS Nichols PD McMeekin TA A new n-C31:9 polyene hydrocarbon from Antarctic bacteria FEMS Microbiol Lett 1995, 125:281-285. 10.1111/ j.1574-6968.1995.tb07369.x
    • (1995) FEMS Microbiol Lett , vol.125 , pp. 281-285
    • Nichols, D.S.1    Nichols, P.D.2    McMeekin, T.A.3
  • 50
    • 0013074651 scopus 로고
    • Microbial lipid metabolism
    • London: Academic Press Limited
    • Finnerty WR Microbial lipid metabolism Microbial Lipids Academic Press Limited 1989, 2:525-566.
    • (1989) Microbial Lipids , vol.2 , pp. 525-566
    • Finnerty, W.R.1
  • 52
    • 0035928728 scopus 로고    scopus 로고
    • Beta-ketoacyl-[acyl carrier protein] synthase I of Escherichia coli: Aspects of the condensation mechanism revealed by analyses of mutations in the active site pocket
    • 10.1021/bi0105577
    • Mcguire KA Siggaard-Andersen M Bangera MG Olsen JG von Wettstein-Knowles P Beta-ketoacyl-[acyl carrier protein] synthase I of Escherichia coli: aspects of the condensation mechanism revealed by analyses of mutations in the active site pocket Biochem 2001, 40:9836-9845. 10.1021/bi0105577
    • (2001) Biochem , vol.40 , pp. 9836-9845
    • Mcguire, K.A.1    Siggaard-Andersen, M.2    Bangera, M.G.3    Olsen, J.G.4    von Wettstein-Knowles, P.5


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