Characterization of IS 6110 insertions in the dnaA-dnaN intergenic region of Mycobacterium tuberculosis clinical isolates

Clinical Microbiology and Infection

Volumn 15, Issue 2, 2009, Pages 200-203

  Turcios, L ^a,b   Casart, Y ^a   Florez, I ^a   De Waard, J ^b   Salazar, L ^a  

^a INSTITUTO VENEZOLANO DE INVESTIGACIONES CIENTÍFICAS   (Venezuela)

^b INSTITUTO DE BIOMEDICINA   (Venezuela)

Author keywords

Chromosomal duplication; Hot spots; Isogenic strains; OriC

Indexed keywords

REPLICATION INITIATOR PROTEIN DNAA; SPACER DNA; BACTERIAL DNA; BACTERIAL PROTEIN; DNA BINDING PROTEIN; DNA DIRECTED DNA POLYMERASE; DNAA PROTEIN, BACTERIA; DNAN PROTEIN, BACTERIA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHROMOSOME REARRANGEMENT; GENE DUPLICATION; GENE INSERTION; HUMAN; INTERSPERSED REPEAT; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; VARIABLE NUMBER OF TANDEM REPEAT; BACTERIUM IDENTIFICATION; CLUSTER ANALYSIS; DNA FINGERPRINTING; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; MICROBIOLOGY; TRANSPOSON; TUBERCULOSIS;

MYCOBACTERIUM TUBERCULOSIS;

BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; DNA, INTERGENIC; DNA-BINDING PROTEINS; DNA-DIRECTED DNA POLYMERASE; GENOTYPE; HUMANS; MINISATELLITE REPEATS; MYCOBACTERIUM TUBERCULOSIS; TUBERCULOSIS;

EID: 62149121400     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1111/j.1469-0691.2008.02107.x     Document Type: Article

References (19)

1. Garcia de Viedma D, Marin M, Ruiz MJ, Bouza E. Analysis of clonal composition of Mycobacterium tuberculosis isolates in primary infections in children. J Clin Microbiol 2004; 42: 3415-3418.
2. Shamputa IC, Rigouts L, Eyongeta LA et.al. Genotypic and phenotypic heterogeneity among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients. J Clin Microbiol 2004; 42: 5528-5536.
3. Matsumoto T, Ano H, Nagai T, Danno K, Takashima T, Tsuyuguchi I. IS 6110 DNA fingerprinting analysis of individually separated colonies of Mycobacterium tuberculosis. Tuberculosis 2005; 85: 207-212.
4. Benjamin WH Jr, Lok KH, Harris R et.al. Identification of a contaminating Mycobacterium tuberculosis strain with a transposition of an IS 6110 insertion element resulting in an altered spoligotype. J Clin Microbiol 2001; 39: 1092-1096.
5. Cave MD, Yang ZH, Stefanova R et al. Epidemiologic import of tuberculosis cases whose isolates have similar but not identical IS 6110 restriction fragment length polymorphism patterns. J Clin Microbiol 2005; 43: 1228-1233.
6. Sampson SL, Richardson M, Van Helden PD, Warren RM. IS 6110 -mediated deletion polymorphism in isogenic strains of Mycobacterium tuberculosis. J Clin Microbiol 2004; 42: 895-898.
7. Kurepina NE, Sreevatsan S, Plikaytis BB et al. Characterization of the phylogenetic distribution and chromosomal insertion sites of five IS 6110 elements in Mycobacterium tuberculosis: Non-random integration in the dnaA-dnaN region. Tuber Lung Dis 1998; 79: 31-42.
8. Sreevatsan S, Pan X, Stockbauer KE et al. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci USA 1997; 94: 9869-9874.
9. Petroff SA. A new and rapid method for the isolation and cultivation of tubercle bacilli directly from the sputum and feces. J Exp Med 1915; 21: 38-42.
10. Ministerio de Salud y Desarrollo Social. Evaluación del Programa Nacional de Control de la Tuberculosis. Reporte Anual. Venezuela: Caracas, 2003.
11. van Embden JD, Cave MD, Crawford JT et.al. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: Recommendations for a standardized methodology. J Clin Microbiol 1993; 31: 406-409.
12. Sola C, Filliol I, Legrand E, Mokrousov I, Rastogi N. Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS1081, IS6110, VNTR, and DR-based spoligotyping suggests the existence of two new phylogeographical clades. J Mol Evol 2001; 53: 680-689.
13. Zawilak A, Kois A, Konopa G, Smulczyk-Krawczyszyn A, Zakrzewska-Czerwinska J. Mycobacterium tuberculosis DnaA initiator protein: Purification and DNA-binding requirements. Biochem J 2004; 382: 247-252.
14. Skarstad K, Boye E. The initiator protein DnaA: Evolution, properties and function. Biochim Biophys Acta 1994; 1217: 111-130.
15. Brosch R, Gordon SV, Buchrieser C, Pym AS, Garnier T, Cole ST. Comparative genomics uncovers large tandem chromosomal duplications in Mycobacterium bovis BCG Pasteur. Yeast 2000; 17: 111-123.
16. Warner DF, Etienne G, Wang XM et al. A derivative of Mycobacterium smegmatis mc(2)155 that lacks the duplicated chromosomal region. Tuberculosis 2006; 86: 438-444.
17. Kamerbeek J, Schouls L, Kolk A et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997; 35: 907-914.
18. Mais M, Kremer K, van Sotolingen D, et al. 24-Locus MIRU-VNTR genotyping is a useful tool to study the molecular epidemiology of tuberculosis among Warao Amerindians in Venezuela. Tuberculosis 2008; 88: 490-494.
19. Salazar L, Fsihi H, de Rossi E et al. Organization of the origins of replication of the chromosomes of Mycobacterium smegmatis, Mycobacterium leprae and Mycobacterium tuberculosis and isolation of a functional origin from M..smegmatis. Mol Microbiol 1996; 20: 283-293.