Evaluation of functional diversity in rhizobacterial taxa of a wild grass (Saccharum ravennae) colonizing abandoned fly ash dumps in Delhi urban ecosystem

Soil Biology and Biochemistry

Volumn 41, Issue 4, 2009, Pages 813-821

  Rau, Nupur ^a   Mishra, Vandana ^a   Sharma, Meenakshi ^a   Das, Mrinal Kumar ^a   Ahaluwalia, Kirtana ^a   Sharma, Radhey Shyam ^a  

^a UNIVERSITY OF DELHI   (India)

Author keywords

Fly ash dump; Grass rhizosphere; Multiple heavy metal tolerance; PGPR; Rhizobacteria; Saccharum ravennae

Indexed keywords

BACTERIOLOGY; CADMIUM; CHROMIUM; FLY ASH; FORESTRY; LEAD; LEAD ALLOYS; MERCURY (METAL); METAL REFINING; METALS; NICKEL; ORGANIC COMPOUNDS; PLANT LIFE EXTENSION; POLLUTION; PURIFICATION; SOILS; ZINC;

GRASS RHIZOSPHERE; MULTIPLE HEAVY METAL TOLERANCE; PGPR; RHIZOBACTERIA; SACCHARUM RAVENNAE;

BACTERIA;

ABANDONED LAND; BACTERIUM; CONCENTRATION (COMPOSITION); ECOSYSTEM FUNCTION; ENZYME ACTIVITY; FLY ASH; GRASS; INHIBITION; METAL; POLLUTION TOLERANCE; RHIZOBACTERIUM; RHIZOSPHERE; ROOT COLONIZATION; SEEDLING ESTABLISHMENT; SPECIES DIVERSITY; URBAN AREA; WILD POPULATION;

ASIA; DELHI; EURASIA; INDIA; SOUTH ASIA;

ARTHROBACTER; ARTHROBACTER UREAFACIENS; BACILLUS (BACTERIUM); BACILLUS SP.; BACTERIA (MICROORGANISMS); BROCHOTHRIX CAMPESTRIS; ENTEROCOCCUS CASSELIFLAVUS; ERIANTHUS RAVENNAE; MICROBACTERIUM BARKERI; PAENIBACILLUS; PAENIBACILLUS DURUS; PAENIBACILLUS LARVAE; POSIBACTERIA; PSEUDOMONAS AERUGINOSA; RHIZOBIALES; RHIZOBIUM; SACCHARUM; SERRATIA MARCESCENS;

EID: 62049085938     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2009.01.022     Document Type: Article

References (64)

1. Abaye D.A., Lawlor K., Hirsch P.R., and Brookes P.C. Changes in the microbial community of an arable soil caused by long-term metal contamination. European Journal of Soil Sciences 56 (2005) 93-102
2. Asokan P., Saxena M., and Asolekar S.R. Coal combustion residues-environmental implications and recycling potentials. Resources, Conservation and Recycling 43 (2005) 239-262
3. Ayers S.H., Rupp P., and Johnson W.T. A Study of Alkali Forming Bacteria in Milk. Bulletin no. 782 (1919), US Department of Agriculture, Washington (DC)
4. Bakkers A.W., and Schippers B. Microbial cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomonas spp.-mediated plant growth inhibition. Soil Biology and Biochemistry 19 (1987) 451-457
5. Barkay T., Tripp S.C., and Olson B.H. Effect of metal-rich sewage sludge application on the bacterial communities of grasslands. Applied and Environmental Microbiology 49 (1985) 333-337
6. Barry A.L., Bernsohn K.L., Adams A.P., and Thrupp L.D. Improved 18-hour methyl red test. Applied Microbiology 20 (1970) 866-870
7. Beneduzi A., Peres D., Vargas L.K., Bodanese-Zanettini M.H., and Passaglia L.M.P. Evaluation of genetic diversity and plant growth promoting activities of nitrogen-fixing bacilli isolated from rice fields in South Brazil. Applied Soil Ecology 39 (2008) 311-320
8. Bertin G., and Averbeck D. Cadmium: cellular effects, modifications of biomolecules, modulation of DNA repair and genotoxic consequences (a review). Biochimie 88 (2006) 1549-1559
9. Boddey R.M. Biological nitrogen fixation in sugar cane: a key to energetically viable biofuel production. Critical Reviews in Plant Sciences 6 (1995) 209-266
10. Bolan N.S., Naidu R., Mahimairaja S., and Baskaran S. Influence of low-molecular-weight organic acids on the solubilization of phosphates. Biology and Fertility of Soils 18 (1994) 311-319
11. Burd G.I., Dixon D.G., and Glick B.R. A plant growth promoting bacterium that decreases nickel toxicity in seedlings. Applied and Environmental Microbiology 64 (1998) 3663-3668
12. Burd G.I., Dixon D.G., and Glick B.R. Plant growth-promoting bacteria that decrease heavy metal toxicity in plants. Canadian Journal of Microbiology 46 (2000) 237-245
13. Chen Y.P., Rekha P.D., Arun A.B., Shen F.T., Lai W.-A., and Young C.C. Phosphate solubilizing bacteria from subtropical soil and their tricalcium phosphate solubilizing abilities. Applied Soil Ecology 34 (2006) 33-41
14. Devi K.K., Seth N., Kothamasi S., and Kothamasi D. Hydrogen cyanide-producing rhizobacteria kill subterranean termite Odontotermes obesus (Rambur) by cyanide poisoning under in vitro conditions. Current Microbiology 54 (2007) 74-78
15. Eaton A.D., Clesceri L.S., Rice E.W., Greenberg A.E., and Franson M.A.H. Standard Methods for the Examination of Water and Wastewater (2005), APHA, Washington, USA
16. Faramarzi M.A., and Brandl H. Formation of water-soluble metal cyanide complexes from solid minerals by Pseudomonas plecoglossicida. FEMS Microbiology Letters 259 (2006) 47-52
17. Faramarzi M.A., Stagars M., Pensini E., Krebs W., and Brandl H. Metal solubilization from metal-containing solid materials by cyanogenic Chromobacterium violaceum. Journal of Biotechnology 113 (2004) 321-326
18. Frostegård A., Tunlid A., and Bååth E. Phospholipid fatty acid composition, biomass and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Applied and Environmental Microbiology 59 (1993) 3605-3617
19. In: Garrity G.M. (Ed). Bergey's Manual of Systematic Bacteriology (1984), Williams and Wilkins, Baltimore
20. Gregersen T. Rapid method for distinction of Gram-negative from Gram-positive bacteria. European Journal of Applied Microbiology 5 (1978) 123-127
21. Gyaneshwar P., James E.K., Mathan N., Reddy P.M., Reinhold-Hurek B., and Ladha J.K. Endophytic colonization of rice by a diazotrophic strain of Serratia marcescens. Journal of Bacteriology 183 (2001) 2634-2645
22. Hajna A.A. Triple-sugar iron agar medium for the identification of the intestinal group of bacteria. Journal of Bacteriology 49 (1945) 516-517
23. Han J., Sun L., Dong X., Cai Z., Sun X., Yang H., Wang Y., and Song W. Characterization of a novel plant growth-promoting bacterial strain Delftia tsuruhatensis HR4 both as a diazotroph and a potential biocontrol agent against various plant pathogens. Systematics and Applied Microbiology 28 (2005) 66-76
24. Huang X., El-Alawi Y., Penrose D., Glick B.R., and Greenberg B.M. Responses of three grass species to creosote during phytoremediation. Environmental Pollution 130 (2004) 453-463
25. Hugh R., and Leifson E. The taxonomic significance of fermentative versus oxidative Gram-negative bacteria. Journal of Bacteriology 66 (1953) 24-26
26. Idris R., Trifonova R., Puschenreiter M., Wenzel W.W., and Sessitssch A. Bacterial communities associated with flowering plants of the Ni hyperaccumulator Thlaspi goesingense. Applied and Environmental Microbiology 70 (2004) 2667-2677
27. Jackson C.R., Harrison K.G., and Dugas S.L. Enumeration and characterization of a culturable arsenate resistant bacteria in a large estuary. Systematics and Applied Microbiology 28 (2005) 727-734
28. Kabata-Pendias A. Trace Elements in Soils and Plants. third ed. (2001), CRC Press LLC, Boca Raton, Florida
29. Kaur R., and Rani R. Spatial characterization and prioritization of heavy metal contaminated soil-water resources in peri-urban areas of national capital territory (NCT), Delhi. Environmental Monitoring and Assessment 123 (2006) 233-247
30. Lau O.-L., and Yang S.F. Inhibition of ethylene production by cobaltous ion. Plant Physiology 58 (1976) 114-117
31. Lelliott R.A., Billing E., and Hayward A.C. A determinative scheme for the fluorescent plant pathogenic pseudomonads. Journal of Applied Bacteriology 29 (1966) 470-489
32. Li J., Zu J., Tang C., Wu J., Muhammad A., and Wang H. Application of 16S rDNA-PCR amplification and DDGE fingerprinting for detection of shift in microbial community diversity in Cu, Zn and Cd contaminated paddy soils. Chemosphere 62 (2005) 1375-1380
33. MacConkey A. Lactose-fermenting bacteria in faeces. Journal of Hygiene 5 (1905) 333-379
34. McMurphy L.M., Biradar D.P., Taets C., and Rayburn A.L. Differential effects of weathered coal fly ash and fly ash leachate on the maize genome. Archives of Environmental Contamination and Toxicology 31 (1996) 166-169
35. Mergeay M. Heavy metal resistance in microbial ecosystems. In: Akkermans A.D.L., van Elsas J.D., and de Bruijn F.J. (Eds). Molecular Microbial Ecology Manual (1995), Kluwer Academic Publishers, The Netherlands Section 6.1.7
36. Michel C., Marie-Thérèse G.-O., Baymann F., and Bruschi M. Bioremediation of chromate by sulfate-reducing bacteria, cytochromes c3 and hydrogenases. Water, Air and Soil Pollution 3 (2003) 161-169
37. Moller J., Miller M., and Kjoller A. Fungal-bacterial interaction on beech leaves: influence on decomposition and dissolved organic carbon quality. Soil Biology and Biochemistry 31 (1999) 367-374
38. Nies D.H. Efflux-mediated heavy metal resistance in prokaryotes. FEMS Microbiology Reviews 27 (2003) 313-339
39. Pavlovic P., Mitrovic M., and Djurdjevic L. An ecophysiological study of plants growing on the fly ash deposits from the "Nikola Tesla-A" thermal power station in Serbia. Environmental Management 33 (2004) 654-663
40. Pennanen T., Frostegård A., Fritze H., and Bååth E. Phospholipid fatty acid composition and heavy metal tolerance of soil microbial communities along two heavy metal-polluted gradients in coniferous forests. Applied and Environmental Microbiology 62 (1996) 420-428
41. Penrose D.M., and Glick B.R. Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria. Physiologia Plantarum 118 (2003) 10-15
42. Perin L., Marti{dotless}́nez-Aguilar L., Paredes-Valdez G., Baldani J.I., Estrada-de los Santos P., Reiss V.M., and Caballero-Mellado J. Burkholderia silvatlantica sp. nov., a diazotrophic bacterium associated with sugar cane and maize. International Journal of Systematics and Evolutionary Microbiology 56 (2006) 1931-1937
43. Pishchik V.N., Vorobyev N.I., Chernyaeva I.I., Timofeeva S.V., Kozhemyakov A.P., Alexeev Y.V., and Lukin S.M. Experimental and mathematical simulation of plant growth promoting rhizobacteria and plant interaction under cadmium stress. Plant and Soil 243 (2002) 173-186
44. Primerano P., Marino G., Di Pasquale S., Mavilia L., and Corigliano F. Possible alteration of monuments caused by particles emitted into the atmosphere carrying strong primary acidity. Atmospheric Environment 34 (2000) 3889-3896
45. Purdy C.W., Straus D.C., and Ayers J.R. Effects of aerosolized class C fly ash in weanling goats. American Journal of Veterinary Research 66 (2005) 991-995
46. 6+ on the growth of Indian mustard. Chemosphere 62 (2006) 741-748
47. Raol B.V. Bacterial flora in the rhizosphere of sugarcane plant, Saccharum officinarum. World Journal of Microbiology and Biotechnology 7 (1991) 431-432
48. Schwyn B., and Neilands J.B. Universal chemical assay for the detection and determination of siderophores. Analytical Biochemistry 160 (1987) 47-56
49. Shaeffer A.B., and Fulton M. A simplified method of staining endospores. Science 77 (1933) 194
50. Sharma M., Rau N., Mishra V., and Sharma R.S. Unexplored ecological significance of Saccharum munja. Species 43 (2005) 22
51. Sharma R.S., Mohmmed A., and Babu C.R. Diversity among rhizobiophages from rhizospheres of legumes inhabiting three ecogeographical regions of India. Soil Biology and Biochemistry 34 (2002) 965-973
52. Sharma R.S., Mohmmed A., Mishra V., and Babu C.R. Diversity in promiscuous group of rhizobia from three Sesbania spp. colonizing ecologically distinct habitats of the semi-arid Delhi region. Research in Microbiology 156 (2005) 57-67
53. Sharma R.S., Mishra V., Mohmmed A., and Babu C.R. Phage specificity and lipopolysaccharides of stem- and root-nodulating bacteria (Azorhizobium caulinodans, Sinorhizobium spp., and Rhizobium spp.) of Sesbania spp. Archives of Microbiology 189 (2008) 411-418
54. Simmons J.S. A culture medium for differentiating organisms of typhoid-colon aerogenes groups and for isolating of certain fungi. Journal of Infectious Diseases 39 (1926) 209-241
55. Sirikantaramas S., Yamazaki M., and Saito K. Mechanisms of resistance to self-produced toxic secondary metabolites in plants. Phytochemistry Reviews 7 (2008) 467-477
56. Sokal R.R., and Rohlf F.J. Biometry. third sub ed. (1994), W.H. Freeman & Co., San Francisco, CA 880 pp.
57. Suslow T.V., Schroth M.N., and Isaka M. Application of a rapid method for Gram differentiation of plant pathogenic and saprophytic bacteria without staining. Phytopathology 72 (1982) 917-918
58. Tejera N., Lluch C., Martinez-Toledo M.V., and Gonzalez-Lopez J. Isolation and characterization of Azotobacter and Azospirillum strains from the sugarcane rhizosphere. Plant and Soil 270 (2005) 223-232
59. Theis T.L., and Gardner K.H. Environmental assessment of ash disposal. Critical Reviews in Environmental Control 20 (1990) 21-42
60. Twardowska I., and Szczepanska J. Solid waste: terminological and long-term environmental risk assessment problems exemplified in a power plant fly ash study. Science of the Total Environment 285 (2002) 29-51
61. Wenzel C.L., Ashford A.E., and Summerell B.A. Phosphate-solubilizing bacteria associated with proteoid roots of seedlings of waratah Telopea speciosissima (Sm.) R.Br. New Phytologist 128 (1994) 487-496
62. Young K.D. The selective value of bacterial shape. Microbiology and Molecular Biology Reviews 70 (2006) 660-703
63. Zhuang X., Chen J., Shim H., and Bai Z. New advances in plant growth-promoting rhizobacteria for bioremediation. Environment International 3 (2007) 406-413
64. Zhou D.Z., Gu Z.L., Xie S.Q., and Wu L.S. Effect of synergism and antagonism between metals on toxicity in soils. Pedosphere 1 (1991) 177-187