Inference of functional networks of condition-specific response - A case study of quiescence in yeast

Pacific Symposium on Biocomputing 2009, PSB 2009

Volumn , Issue , 2009, Pages 51-62

  Roy, Sushmita ^a   Lane, Terran ^a   Werner Washburne, Margaret ^b   Martinez, Diego ^b  

^a University of New Mexico   (United States)

^b UNIVERSITY OF NEW MEXICO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL TYPES; CELLULAR STATE; ENVIRONMENTAL CONDITIONS; EXPRESSION DATA; FUNCTIONAL NETWORK; GENE ONTOLOGY; HUMAN DISEASE; INFERRED NETWORKS; MARKOV RANDOM FIELDS; NETWORK HUBS; NETWORK LEVEL; PROBABILISTIC GRAPHICAL MODELS; STATIONARY PHASE; STATISTICAL DEPENDENCIES; SUBGRAPHS; YEAST CELL;

CELL CULTURE; CELL PROLIFERATION; GENE EXPRESSION;

CELLS;

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; BIOMETRY; CELL CYCLE; CYTOLOGY; DNA MICROARRAY; FUNGAL GENE; GENE EXPRESSION; GENE REGULATORY NETWORK; GENERAL ASPECTS OF DISEASE; GENETIC DATABASE; GENETICS; HUMAN; PROBABILITY; SACCHAROMYCES CEREVISIAE; STATISTICS;

ALGORITHMS; BIOMETRY; CELL CYCLE; DATABASES, GENETIC; DISEASE; GENE EXPRESSION; GENE REGULATORY NETWORKS; GENES, FUNGAL; HUMANS; MARKOV CHAINS; MODELS, BIOLOGICAL; MODELS, GENETIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SACCHAROMYCES CEREVISIAE;

EID: 61949323210     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (20)

1. H.-y' Chuang, E. Lee, Y.-T. Liu, D. Lee, T. Ideker, Mol Syst Bioi 3 (2007).
2. P. Abbeel, D. Koller, A. Y. Ng, JMLR 7, 1743 (2006).
3. S. Roy, T. Lane, M. Werner-Washburne, Tech. Rep. TR-CS-200B-14, University of New Mexico (2008).
4. A. D. Aragon, et al., Molecular Biology of the Cell (2008).
5. C. Allen, et al., J Cell Bioi 174, 89 (2006).
6. N. Friedman, Science 303, 799 (2004).
7. J. Yu, A. A. Smith, P. P. Wang, A. J. Hartemink, Bioinformatics 20, 3594+ (2004).
8. E. Segal, et al., Nat Genet 34, 166 (2003).
9. A. Margolin, et al., BMC Bioinformatics (Suppl 1): 87 (2005).
10. Y. Qi, H. Ge, PLoS Computational Biology 2, e174+ (2006).
11. C. T. Harbison, et al., Nature (2004).
12. M. Ashburner, et al., Nat Genet 25, 25 (2000).
13. D. Heckerman, D. M. Chickering, C. Meek, R. Rounthwaite, C. M. Kadie, JMLR 1, 49 (2000).
14. T. M. Cover, J. A. Thomas, Elements of information theory (Wiley-Interscience, New York, NY, USA, 1991).
15. T. R. Hughes, et al., Cell 102, 109 (2000).
16. I. Lee, S. V. Date, A. T. Adai, E. M. Marcotte, Science 306, 1555 (2004).
17. M. B. Eisen, P. T. Spellman, P. O. Brown, D. Botstein, Pmc Natl Acad Sci USA 95, 14863 (1998).
18. E. I. Boyle, et al., Bioinjormatics 20, 3710+ (2005).
19. A. D. Aragon, G. A. Quinones, E. V. Thomas, S. Roy, M. Werner-Washburne, Genome Bioi 7 (2006).
20. A. Hamosh, A. F. Scott, J. S. Amberger, C. A. Bocchini, V. A. McKusick, Nucleic Acids Res 33 Database Issue (2005).