A and C genome distinction and chromosome identification in Brassica napus by sequential fluorescence in situ hybridization and genomic in situ hybridization

Genetics

Volumn 180, Issue 4, 2008, Pages 1849-1857

  Howell, Elaine C ^a   Kearsey, Michael J ^a   Jones, Gareth H ^a   King, Graham J ^b   Armstrong, Susan J ^a  

^a UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^b ROTHAMSTED RESEARCH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; SPACER DNA;

ALLOPOLYPLOIDY; ARTICLE; CABBAGE; CHROMOSOME IDENTIFICATION; CHROMOSOME PAIRING; FLUORESCENCE IN SITU HYBRIDIZATION; GENE MAPPING; GENE REARRANGEMENT; GENE SEQUENCE; GENE TRANSLOCATION; GENOME ANALYSIS; GENOMIC IN SITU HYBRIDIZATION; GENOMICS; HETEROCHROMATIN; MEIOSIS; NONHUMAN; PACHYTENE; PLANT GENETICS; POLLEN MOTHER CELL; PRIORITY JOURNAL; RAPESEED; RECIPROCAL CHROMOSOME TRANSLOCATION; SEQUENTIAL ANALYSIS; TURNIP;

BRASSICA NAPUS; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, PLANT; DNA, PLANT; DNA, RIBOSOMAL; GENOME, PLANT; IN SITU HYBRIDIZATION; IN SITU HYBRIDIZATION, FLUORESCENCE; NUCLEIC ACID HYBRIDIZATION; PACHYTENE STAGE; TRANSLOCATION, GENETIC;

BRASSICA NAPUS;

EID: 61849103424     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.095893     Document Type: Article

References (40)

1. ALIX, K., and J. S. HESLOP-HARRISON, 2004 The diversity of retroelements in diploid and allotetraploid Brassica species. Plant Mol. Biol. 54: 895-909.
2. ALIX, K., J. JOETS, C. D. RYDER, J. MOORE, G. C. BARKER et al., 2008 The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation. Plant J. (in press).
3. ARMSTRONG, S. J., P. FRANSZ, D. F. MARSHALL and G. H. JONES, 1998 Physical mapping of DNA repetitive sequences to mitotic and meiotic chromosomes of Brassica oleracea var. alboglabra by fluorescence in situ hybridization. Heredity 81: 666-673.
4. BHATIA, S., M. S. NEGI and M. LAKSHMIKUMARAN, 1996 Structural analysis of the rDNA intergenic spacer of Brassica nigra: evolutionary divergence of the spacers of the three diploid Brassica species. J. Mol. Evol. 43: 460-468.
5. BOHUON, E. J. R., D. J. KEITH, I. A. P. PARKIN, A. G. SHARPE and D. J. LYDIATE, 1996 Alignment of the conserved C genomes of Brassica oleracea and Brassica napus. Theor. Appl. Genet. 93: 833-839.
6. CHEN, Z. J., and C. S. PIKAARD, 1997 Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica. Proc. Natl. Acad. Sci. USA 94: 3442-3447.
7. GALVAO BEZERRA DOS SANTOS, K., H. C. BECKER, W. ECKE and U. BELLIN, 2007 Molecular characterisation and chromosomal localisation of a telomere-like repetitive DNA sequence highly enriched in the C genome of Brassica. Cytogenet. Genome Res. 119: 147-153.
8. GE, X. H., and Z. Y. LI, 2007 Intra- and intergenomic homology of B-genome chromosomes in trigenomic combinations of the cultivated Brassica species revealed by GISH analysis. Chromosome Res. 15: 849-861.
9. GERLACH, W. L., and J. R. BEDBROOK, 1979 Cloning and characterisation of ribosomal genes from wheat and barley. Nucleic Acids Res. 7: 1869-1885.
10. HARRISON, G. E., and J. S. HESLOPHARRISON, 1995 Centromeric repetitive DNA-sequences in the genus Brassica. Theor. Appl. Genet. 90: 157-165.
11. HASTEROK, R., E. WOLNY, S. KULAK, A. ZDZIECHIEWICZ, J. MALUSZYNSKA et al., 2005 Molecular cytogenetic analysis of Brassica rapa Brassica oleracea var. alboglabra monosomic addition lines. Theor. Appl. Genet. 111: 196-205.
12. HASTEROK, R., E. WOLNY, M. HOSIAWA, M. KOWALCZYK, S. KULAK-KSIAZCZYK et al., 2006 Comparative analysis of rDNA distribution in chromosomes of various species of Brassicaceae. Ann. Bot. 97: 205-216.
13. HOWELL, E. C., G. C. BARKER, G. H. JONES, M. J. KEARSEY, G. J. KING et al., 2002 Integration of the cytogenetic and genetic linkage maps of Brassica oleracea. Genetics 161: 1225-1234.
14. HOWELL, E. C., S. J. ARMSTRONG, G. C. BARKER, G. H. JONES, G. J. KING et al., 2005 Physical organization of the major duplication on Brassica oleracea chromosome O6 revealed through fluorescence in situ hybridization with Arabidopsis and Brassica BAC probes. Genome 48: 1093-1103.
15. INABA, R., and T. NISHIO, 2002 Phylogenetic analysis of Brassiceae based on the nucleotide sequences of the S-locus related gene, SLR1. Theor. Appl. Genet. 105: 1159-1165.
16. JENCZEWSKI, E., F. EBER, A. GRIMAUD, S. HUET, M. O. LUCAS et al., 2003 PrBn, a major gene controlling homeologous pairing in oilseed rape (Brassica napus) haploids. Genetics 164: 645-653.
17. KAMISUGI, Y., S. NAKAYAMA, C. M. O'NEIL, R. J. MATHIAS, M. TRICK et al., 1998 Visualization of the Brassica self-incompatibility S-locus on identified oilseed rape chromosomes. Plant Mol. Biol. 38: 1081-1087.
18. KOVARIK, A., J. C. PIRES, A. R. LEITCH, K. Y. LIM, A. M. SHERWOOD et al., 2005 Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics 169: 931-944.
19. LEFLON, M., F. EBER, J. C. LETANNEUR, L. CHELYSHEVA, O. CORITON et al., 2006 Pairing and recombination at meiosis of Brassica rapa (AA) x Brassica napus (AACC) hybrids. Theor. Appl. Genet. 113: 1467-1480.
20. LIM, K. B., H. DE JONG, T. J. YANG, J. Y. PARK, S. J. KWON et al., 2005 Characterization of rDNAs and tandem repeats in the heterochromatin of Brassica rapa. Mol. Cell 19: 436-444.
21. LIM, K. B., T. J. YANG, Y. J. HWANG, J. S. KIM, J. Y. PARK et al., 2007 Characterization of the centromere and peri-centromere retrotransposons in Brassica rapa and their distribution in related Brassica species. Plant J. 49: 173-183.
22. LIU, Z. Q., K. ADAMCZYK, M. MANZANARES- DAULEUX, F. EBER, M. O. LUCAS et al., 2006 Mapping PrBn and other quantitative trait loci responsible for the control of homeologous chromosome pairing in oilseed rape (Brassica napus L.) haploids. Genetics 174: 1583-1596.
23. LUKASZEWSKI, A. J., B. LAPINSKI and K. RYBKA, 2005 Limitations of in situ hybridization with total genomic DNA in routine screening for alien introgressions in wheat. Cytogenet. Genome Res. 109: 373-377.
24. LYSAK, M. A., M. A. KOCH, A. PECINKA and I. SCHUBERT, 2005 Chromosome triplication found across the tribe Brassiceae. Genome Res. 15: 516-525.
25. MALUSZYNSKA, J., and R. HASTEROK, 2005 Identification of individual chromosomes and parental genomes in Brassica juncea using GISH and FISH. Cytogenet. Genome Res. 109: 310-314.
26. NICOLAS, S. D., G. LE MIGNON, F. EBER, O. CORITON, H. MONOD et al., 2007 Homeologous recombination plays a major role in chromosome rearrangements that occur during meiosis of Brassica napus haploids. Genetics 175: 487-503.
27. OSBORN, T. C., D. V. BUTRULLE, A. G. SHARPE, K. J. PICKERING, I. A. P. PARKIN et al., 2003 Detection and effects of a homeologous reciprocal transposition in Brassica napus. Genetics 165: 1569-1577.
28. PARKIN, I. A. P., and D. J. LYDIATE, 1997 Conserved patterns of chromosome pairing and recombination in Brassica napus crosses. Genome 40: 496-504.
29. PARKIN, I. A. P., A. G. SHARPE, D. J. KEITH and D. J. LYDIATE, 1995 Identification of the A and C genomes of amphidiploid Brassica napus (oilseed rape). Genome 38: 1122-1131.
30. RAINA, S. N., and V. RANI, 2001 GISH technology in plant genome research. Methods Cell Sci. 23: 83-104.
31. SHARPE, A. G., I. A. P. PARKIN, D. J. KEITH and D. J. LYDIATE, 1995 Frequent nonreciprocal translocations in the amphidiploid genome of oilseed rape (Brassica napus). Genome 38: 1112-1121.
32. SNOWDON, R. J., W. KOHLER, W. FRIEDT and A. KOHLER, 1997 Genomic in situ hybridization in Brassica amphidiploids and interspecific hybrids. Theor. Appl. Genet. 95: 1320-1324.
33. SNOWDON, R. J., T. FRIEDRICH, W. FRIEDT and W. KOHLER, 2002 Identifying the chromosomes of the A- and C-genome diploid Brassica species B. rapa (syn. campestris) and B. oleracea in their amphidiploid B. napus. Theor. Appl. Genet. 104: 533-538.
34. U, N., 1935 Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Jpn. J. Bot. 7: 389-452.
35. UDALL, J. A., P. A. QUIJADA and T. C. OSBORN, 2005 Detection of chromosomal rearrangements derived from homeologous recombination in four mapping populations of Brassica napus L. Genetics 169: 967-979.
36. WARWICK, S. I., and L. D. BLACK, 1991 Molecular systematics of Brassica and allied genera (subtribe Brassicinae, Brassiceae): chloroplast genome and cytodeme congruence. Theor. Appl. Genet. 82: 81-92.
37. WATERS, E. R., and B. A. SCHAAL, 1996 Biased gene conversion is not occurring among rDNA repeats in the Brassica triangle. Genome 39: 150-154.
38. WENDEL, J. F., 2000 Genome evolution in polyploids. Plant Mol. Biol. 42: 225-249.
39. YANG, Y. W., K. N. LAI, P. Y. TAI, D. P. MA and W. H. LI, 1999 Molecular phylogenetic studies of Brassica, Rorippa, Arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA. Mol. Phylogenet. Evol. 13: 455-462.
40. ZHANG, X. Y., and S. R. WESSLER, 2004 Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea. Proc. Natl. Acad. Sci. USA 101: 5589-5594.