Isolation by distance among California sea lion populations in Mexico: Redefining management stocks

Molecular Ecology

Volumn 18, Issue 6, 2009, Pages 1088-1099

  Gonzalez Suarez M ^a,c   Flatz, R ^a   Aurioles Gamboa, D ^b   Hedrick, P W ^a   Gerber, L R ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

^b INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

^c CNRS   (France)

Author keywords

Gulf of California; Microsatellites; Mitochondrial DNA; Pinniped; Population structure; Sex biased dispersal; Zalophus californianus

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CELL NUCLEUS; FEMALE; GENE FLOW; GENE FREQUENCY; GENETIC POLYMORPHISM; GENETICS; MALE; MEXICO; POPULATION DYNAMICS; POPULATION GENETICS; SEAL;

ANIMALS; CELL NUCLEUS; DNA, MITOCHONDRIAL; FEMALE; GENE FLOW; GENE FREQUENCY; GENETICS, POPULATION; MALE; MEXICO; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; POPULATION DYNAMICS; SEA LIONS;

MAMMALIA; OTARIIDAE; PINNIPEDIA; ZALOPHUS; ZALOPHUS CALIFORNIANUS;

EID: 61649095015     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04093.x     Document Type: Article

References (68)

1. Acevedo-Whitehouse K, Gulland F, Greig D, Amos W (2003) Disease susceptibility in California sea lions. Nature, 422, 35 35.
2. Acevedo-Whitehouse K, Spraker TR, Lyons E et al 2006) Contrasting effects of heterozygosity on survival and hookworm resistance in California sea lion pups. Molecular Ecology, 15, 1973 1982.
3. Allen PJ, Amos W, Pomeroy PP, Twiss SD (1995) Microsatellite variation in grey seals (Halichoerus grypus) shows evidence of genetic differentiation between two British breeding colonies. Molecular Ecology, 4, 653 662.
4. Baguette M, Petit S, Queva F (2000) Population spatial structure and migration of three butterfly species within the same habitat network: consequences for conservation. Journal of Applied Ecology, 37, 100 108.
5. Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society, Series B (Statistical Methodology), 57, 289 300.
6. Bowen L, Aldridge BM, DeLong R et al 2006) MHC gene configuration variation in geographically disparate populations of California sea lions (Zalophus californianus). Molecular Ecology, 15, 529 533.
7. Buchanan FC, Maiers LD, Thue TD, De March B GE et al 1998) Microsatellites from the Atlantic walrus Odobenus rosmarus rosmarus. Molecular Ecology, 7, 1083 1085.
8. Burg TM, Trites AW, Smith MJ (1999) Mitochondrial and microsatellite DNA analyses of harbour seal population structure in the northeast Pacific Ocean. Canadian Journal of Zoology/Revue Canadienne de Zoologie, 77, 930 943.
9. Campagna C, Werner R, Karesh W et al 2001) Movements and location at sea of South American sea lions (Otaria flavescens). Journal of Zoology, 255, 205 220.
10. Carretta JV, Forney KA, Lowry M et al 2007) US Pacific marine mammal stock assessments: 2007. US Department of Commerce, National Oceanic and Atmospheric Administration. NOAA-TM-NMFS-SWFSC-414.
11. Chappell DE, Van den Bussche RA, Krizan J, Patterson B (2004) Contrasting levels of genetic differentiation among populations of wolverines (Gulo gulo) from northern Canada revealed by nuclear and mitochondrial loci. Conservation Genetics, 5, 759 767.
12. Clement M, Posada D, Crandall KA (2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
13. Coltman DW, Don Bowen W, Wright JM (1996) PCR primers for harbour seal (Phoca vitulina concolour) microsatellites amplify polymorphic loci in other pinniped species. Molecular Ecology, 5, 161 163.
14. Corander J, Waldmann P, Sillanpaa MJ (2003) Bayesian analysis of genetic differentiation between populations. Genetics, 163, 367 374.
15. Corander J, Marttinen P, Mantyniemi S (2006) A Bayesian method for identification of stock mixtures from molecular marker data. Fishery Bulletin, 104, 550 558.
16. Crandall KA, Templeton AR (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics, 134, 959 969.
17. Dizon AE, Lockyer C, Perrin WF, Demaster DP, Sisson J (1992) Rethinking the stock concept - a phylogeographic approach. Conservation Biology, 6, 24 36.
18. Ennos RA (1994) Estimating the relative rates of pollen and seed migration among plant populations. Heredity, 72, 250 259.
19. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software Structure: a simulation study. Molecular Ecology, 14, 2611 2620.
20. Excoffier L (2003) Analysis of population subdivision. In : Handbook of Statistical Genetics (eds Balding DJ, Bishop M, Cannings C pp. 722 750. Wiley Publishers, Chippenham, Wiltshire, UK.
21. Excoffier L, Laval G, Schneider S (2005) Arlequin version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
22. Fraser DJ, Bernatchez L (2001) Adaptive evolutionary conservation: towards a unified concept for defining conservation units. Molecular Ecology, 10, 2741 2752.
23. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915 925.
24. Gaggiotti OE, Vetter RD (1999) Effect of life history strategy, environmental variability, and overexploitation on the genetic diversity of pelagic fish populations. Canadian Journal of Fisheries and Aquatic Sciences, 56, 1376 1388.
25. González-Suárez M, Gerber LR (2008) A behaviorally-explicit demographic model integrates habitat selection and population dynamics in California sea lions. Conservation Biology, 22, 1608 1618.
26. Gonzalez-Suarez M, McCluney KE, Aurioles D, Gerber LR (2006) Incorporating uncertainty in spatial structure for viability predictions: a case study of California sea lions (Zalophus californianus californianus). Animal Conservation, 9, 219 227.
27. Goodman SJ (1997) Dinucleotide repeat polymorphisms at seven anonymous microsatellite loci cloned from the European Harbour Seal (Phoca vitulina vitulina). Animal Genetics, 28, 310 311.
28. Goudet J (1995) fstat (version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485 486.
29. Goudet J, Raymond M, deMeeus T, Rousset F (1996) Testing differentiation in diploid populations. Genetics, 144, 1933 1940.
30. Greenwood PJ (1980) Mating systems, philopatry and dispersal in birds and mammals. Animal Behaviour, 28, 1140 1162.
31. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95 98.
32. Hedrick PW (2005a) Genetics of Populations, 3rd edn. Jones and Bartlett Publishers, Sudbury, Massachusetts.
33. Hedrick PW (2005b) A standardized genetic differentiation measure. Evolution, 59, 1633 1638.
34. Hedrick PW (2007) Sex: Differences in mutation, recombination, selection, gene flow, and genetic drift. Evolution, 61, 2750 2771.
35. Hernandez-Camacho CJ, Aurioles-Gamboa D, Laake J, Gerber LR (2008) Survival rates of the California sea lion, Zalophus californianus, in Mexico. Journal of Mammalogy, 89, 1059 1066.
36. Hernandez-Velazquez FD, Galindo-Sanchez CE, Taylor MI et al 2005) New polymorphic microsatellite markers for California sea lions (Zalophus californianus). Molecular Ecology Notes, 5, 140 142.
37. Hoelzel AR, Campagna C, Arnbom T (2001) Genetic and morphometric differentiation between island and mainland southern elephant seal populations. Proceedings of the Royal Society B: Biological Sciences, 268, 325 332.
38. Hoffman JI, Amos W (2005) Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion. Molecular Ecology, 14, 599 612.
39. Hoffman JI, Matson CW, Amos W, Loughlin TR, Bickham JW (2006) Deep genetic subdivision within a continuously distributed and highly vagile marine mammal, the Steller's sea lion (Eumetopias jubatus). Molecular Ecology, 15, 2821 2832.
40. Jakobsson M, Rosenberg NA (2007) clumpp: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801 1806.
41. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In : Mammalian Protein Metabolism (ed. Munro HN pp. 21 132. Academic Press, New York.
42. Lande R (1988) Genetics and demography in biological conservation. Science, 241, 1455 1460.
43. Latch EK, Dharmarajan G, Glaubitz JC, Rhodes OE (2006) Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conservation Genetics, 7, 295 302.
44. Lawson Handley LJ, Perrin N (2007) Advances in our understanding of mammalian sex-biased dispersal. Molecular Ecology, 16, 1559 1578.
45. Lebreton JD, Hines JE, Pradel R, Nichols JD, Spendelow JA (2003) Estimation by capture-recapture of recruitment and dispersal over several sites. Oikos, 101, 253 264.
46. Maldonado JE, Davila FO, Stewart BS, Geffen E, Wayne RK (1995) Intraspecific genetic differentiation in California sea lions (Zalophus californianus) from Southern California and the Gulf of California. Marine Mammal Science, 11, 46 58.
47. Mantel N (1967) Detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209 220.
48. Mate BR (1975) Annual migrations of the sea lions Eumetopias jubatus and Zalophus californianus along the Oregon coast. Rapports et Proces Verbaux des Reunions Conseil International pour l'Exploration de la Mer., 169, 455 461.
49. Narum SR (2006) Beyond Bonferroni: less conservative analyses for conservation genetics. Conservation Genetics, 7, 783 787.
50. Nei M, Kumar S (2000) Molecular Evolution and Phylogenetics. Oxford University Press, New York.
51. Peterson RS, Bartholomew GA (1967) The Natural History and Behavior of the California Sea Lion. Special publication no. 1. The American Society of Mammalogists, Lawrence, Kansas.
52. Pomeroy PP, Twiss SD, Redman P (2000) Philopatry, site fidelity and local kin associations within grey seal breeding colonies. Ethology, 106, 899 919.
53. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
54. Ramos-Onsins SE, Rozas J (2002) Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution, 19, 2092 2100.
55. Riedman M (1990) The Pinnipeds: Seals, Sea Lions, and Walruses. University of California Press, Berkeley, California.
56. Rosenberg NA (2004) distruct: a program for the graphical display of population structure. Molecular Ecology Notes, 4, 137 138.
57. Rosenberg NA, Burke T, Elo K et al 2001) Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics, 159, 699 713.
58. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219 1228.
59. Schramm-Urrutia Y (2002) Estructura genética y filogeográfica del lobo marino de California (Zalophus Californianus Californianus) en aguas adyacentes a la península de Baja California, México. PhD Dissertation, Universidad Autónoma de Baja, California.
60. Szteren D (2006) Regionalizacion ecologica de las colonias reproductivas de Zalophus C. Californianus en el Golfo de California, Mexico. PhD, Instituto Politecnico Nacional, La Paz, Mexico.
61. Szteren D, Aurioles D, Gerber LR (2006) Population status and trends of the California sea lion (Zalophus californianus californianus) in the Gulf of California, México. In : Sea Lions of the World (eds Trites AW, Atkinson SP, DeMaster DP et al pp. 369 403. Alaska Sea Grant College Program. University of Alaska Fairbanks, Fairbanks, Alaska.
62. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585 595.
63. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. 3. Cladogram estimation. Genetics, 132, 619 633.
64. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
65. Wielgus J, Gonzalez-Suarez M, Aurioles-Gamboa D, Gerber LR (2008) A noninvasive demographic assessment of sea lions based on stage-specific abundances. Ecological Applications, 18, 1287 1296.
66. Wright S (1931) Evolution in Mendelian populations. Genetics, 16, 97 159.
67. Young JK, Hernandez-Camacho CJ, Gerber LR (2007) Long-distance movement of a pinniped neonate. Marine Mammal Science, 23, 926 930.
68. Zavala-Gonzalez A (1990) La poblacion del lobo marino comun. Zalophus Californianus Californianus (Lesson 1828) en las islas del golfo de California, Mexico. Tesis Profesional, Universidad Nacional Autonoma de Mexico, Mexico D.F., Mexico.