-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
ADAMS, M. D., S. E. CELNIKER, R. A. HOLT, C. A. EVANS, J. D. GOCAYNE et al., 2000 The genome sequence of Drosophila melanogaster. Science 287: 2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
ADAMS, M.D.1
CELNIKER, S.E.2
HOLT, R.A.3
EVANS, C.A.4
GOCAYNE, J.D.5
-
2
-
-
0025183708
-
Basic local alignment search tool
-
ALTSCHUL, S. F., W. GISH, W. MILLER, E. W. MYERS and D. J. LIPMAN, 1990 Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
ALTSCHUL, S.F.1
GISH, W.2
MILLER, W.3
MYERS, E.W.4
LIPMAN, D.J.5
-
3
-
-
0038782391
-
Pannier and pointedP2 act sequentially to regulate Drosophila heart development
-
ALVAREZ, A. D., W. SHI, B. A. WILSON and J. B. SKEATH, 2003 Pannier and pointedP2 act sequentially to regulate Drosophila heart development. Development 130: 3015-3026.
-
(2003)
Development
, vol.130
, pp. 3015-3026
-
-
ALVAREZ, A.D.1
SHI, W.2
WILSON, B.A.3
SKEATH, J.B.4
-
4
-
-
0033052969
-
A hierarchical approach to protein molecular evolution
-
BOGARAD, L. D., and M. W. DEEM, 1999 A hierarchical approach to protein molecular evolution. Proc. Natl. Acad. Sci. USA 96: 2591-2595.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2591-2595
-
-
BOGARAD, L.D.1
DEEM, M.W.2
-
5
-
-
0033637328
-
Drosophila grain encodes a GATA transcription factor required for cell rearrangement during morphogenesis
-
BROWN, S., and J. CASTELLI-GAIR HOMBRIA, 2000 Drosophila grain encodes a GATA transcription factor required for cell rearrangement during morphogenesis. Development 127: 4867-4876.
-
(2000)
Development
, vol.127
, pp. 4867-4876
-
-
BROWN, S.1
CASTELLI-GAIR HOMBRIA, J.2
-
6
-
-
0037154157
-
Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes
-
CUI, Y., W. H. WONG, E. BORNBERG-B AUER and H. S. CHAN, 2002 Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes. Proc. Natl. Acad. Sci. USA 99: 809-814.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 809-814
-
-
CUI, Y.1
WONG, W.H.2
BORNBERG, E.3
AUER, B.4
CHAN, H.S.5
-
7
-
-
41149121347
-
The evolution of mammalian gene families
-
DEMUTH, J. P., T. DE BIE, J. E. STAJICH, N. CRISTIANINI and M. W. HAHN, 2006 The evolution of mammalian gene families. PLoS ONE 1: e85.
-
(2006)
PLoS ONE
, vol.1
-
-
DEMUTH, J.P.1
DE BIE, T.2
STAJICH, J.E.3
CRISTIANINI, N.4
HAHN, M.W.5
-
8
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
DROSOPHILA 12 GENOMES CONSORTIUM
-
DROSOPHILA 12 GENOMES CONSORTIUM, A. G. CLARK, M. B. EISEN, D. R. SMITH, C. M. BERGMAN et al., 2007 Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
CLARK, A.G.1
EISEN, M.B.2
SMITH, D.R.3
BERGMAN, C.M.4
-
9
-
-
0032893932
-
-
FORCE, A., M. LYNCH, F. B. PICKETT, A. AMORES, Y. L. YAN et al., 1999 Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
FORCE, A., M. LYNCH, F. B. PICKETT, A. AMORES, Y. L. YAN et al., 1999 Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
-
-
-
10
-
-
0032085975
-
Combinatorial protein design by in vitro recombination
-
GIVER, L., and F. H. ARNOLD, 1998 Combinatorial protein design by in vitro recombination. Curr. Opin. Chem. Biol. 2: 335-338.
-
(1998)
Curr. Opin. Chem. Biol
, vol.2
, pp. 335-338
-
-
GIVER, L.1
ARNOLD, F.H.2
-
11
-
-
23744452485
-
Estimating the tempo and mode of gene family evolution from comparative genomic data
-
HAHN, M. W., T. DE BIE, J. E. STAJICH, C. NGUYEN and N. CRISTIANINI, 2005 Estimating the tempo and mode of gene family evolution from comparative genomic data. Genome Res. 15: 1153-1160.
-
(2005)
Genome Res
, vol.15
, pp. 1153-1160
-
-
HAHN, M.W.1
DE BIE, T.2
STAJICH, J.E.3
NGUYEN, C.4
CRISTIANINI, N.5
-
12
-
-
36048950933
-
Gene family evolution across 12 Drosophila genomes
-
HAHN, M. W., M. V. HAN and S. G. HAN, 2007 Gene family evolution across 12 Drosophila genomes. PLoS Genet. 3: e197.
-
(2007)
PLoS Genet
, vol.3
-
-
HAHN, M.W.1
HAN, M.V.2
HAN, S.G.3
-
13
-
-
23844533589
-
Parallel evolution of chimeric fusion genes
-
JONES, C. D., and D. J. BEGUN, 2005 Parallel evolution of chimeric fusion genes. Proc. Natl. Acad. Sci. USA 102: 11373-11378.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 11373-11378
-
-
JONES, C.D.1
BEGUN, D.J.2
-
14
-
-
0034284437
-
Repbase update: A database and an electronic journal of repetitive elements
-
JURKA, J., 2000 Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16: 418-420.
-
(2000)
Trends Genet
, vol.16
, pp. 418-420
-
-
JURKA, J.1
-
15
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
JURKA, J., V. V. KAPITONOV, A. PAVLICEK, P. KLONOWSKI, O. KOHANY et al., 2005 Repbase update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110: 462-467.
-
(2005)
Cytogenet. Genome Res
, vol.110
, pp. 462-467
-
-
JURKA, J.1
KAPITONOV, V.V.2
PAVLICEK, A.3
KLONOWSKI, P.4
KOHANY, O.5
-
16
-
-
42349111552
-
A universal classification of eukaryotic transposable elements implemented in repbase
-
KAPITONOV, V. V., and J. JURKA, 2008 A universal classification of eukaryotic transposable elements implemented in repbase. Nat. Rev. Genet. 9: 411-412.
-
(2008)
Nat. Rev. Genet
, vol.9
, pp. 411-412
-
-
KAPITONOV, V.V.1
JURKA, J.2
-
17
-
-
0027905006
-
Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila
-
LONG, M., and C. H. LANGLEY, 1993 Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science 260: 91-95.
-
(1993)
Science
, vol.260
, pp. 91-95
-
-
LONG, M.1
LANGLEY, C.H.2
-
18
-
-
0032852328
-
Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila
-
LONG, M., W. WANG and J. ZHANG, 1999 Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila. Gene 238: 135-141.
-
(1999)
Gene
, vol.238
, pp. 135-141
-
-
LONG, M.1
WANG, W.2
ZHANG, J.3
-
19
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
LYNCH, M., and J. S. CONERY, 2000 The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
LYNCH, M.1
CONERY, J.S.2
-
20
-
-
0037270015
-
The evolutionary demography of duplicate genes
-
LYNCH, M., and J. S. CONERY, 2003 The evolutionary demography of duplicate genes. J. Struct. Funct. Genomics 3: 35-44.
-
(2003)
J. Struct. Funct. Genomics
, vol.3
, pp. 35-44
-
-
LYNCH, M.1
CONERY, J.S.2
-
21
-
-
0033972072
-
-
LYNCH, M., and A. FORCE, 2000 The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
-
LYNCH, M., and A. FORCE, 2000 The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
-
-
-
-
22
-
-
0035697435
-
-
LYNCH, M., M. O'HELY, B. WALSH and A. FORCE, 2001 The probability of preservation of a newly arisen gene duplicate. Genetics 159: 1789-1804.
-
LYNCH, M., M. O'HELY, B. WALSH and A. FORCE, 2001 The probability of preservation of a newly arisen gene duplicate. Genetics 159: 1789-1804.
-
-
-
-
23
-
-
0347364640
-
The early stages of duplicate gene evolution
-
MOORE, R. C., and M. D. PURUGGANAN, 2003 The early stages of duplicate gene evolution. Proc. Natl. Acad. Sci. USA 100: 15682-15687.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15682-15687
-
-
MOORE, R.C.1
PURUGGANAN, M.D.2
-
24
-
-
0030716471
-
Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution
-
NADEAU, J. H., and D. SANKOFF, 1997 Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution. Genetics 147: 1259-1266.
-
(1997)
Genetics
, vol.147
, pp. 1259-1266
-
-
NADEAU, J.H.1
SANKOFF, D.2
-
26
-
-
12944325779
-
An endoderm-specific GATA factor gene, dGATAe, is required for the terminal differentiation of the Drosophila endoderm
-
OKUMURA, T., A. MATSUMOTO, T. TANIMURA and R. MURAKAMI, 2005 An endoderm-specific GATA factor gene, dGATAe, is required for the terminal differentiation of the Drosophila endoderm. Dev. Biol. 278: 576-586.
-
(2005)
Dev. Biol
, vol.278
, pp. 576-586
-
-
OKUMURA, T.1
MATSUMOTO, A.2
TANIMURA, T.3
MURAKAMI, R.4
-
27
-
-
1242352089
-
Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
-
TAMURA, K., S. SUBRAMANIAN and S. KUMAR, 2004 Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol. Biol. Evol. 21: 36-44.
-
(2004)
Mol. Biol. Evol
, vol.21
, pp. 36-44
-
-
TAMURA, K.1
SUBRAMANIAN, S.2
KUMAR, S.3
-
28
-
-
0032964297
-
BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences
-
TATUSOVA, T. A., and T. L. MADDEN, 1999 BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174: 247-250.
-
(1999)
FEMS Microbiol. Lett
, vol.174
, pp. 247-250
-
-
TATUSOVA, T.A.1
MADDEN, T.L.2
-
29
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
THOMPSON, J. D., D. G. HIGGINS and T. J. GIBSON, 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
THOMPSON, J.D.1
HIGGINS, D.G.2
GIBSON, T.J.3
-
30
-
-
33645124787
-
Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication
-
VAN HOOF, A., 2005 Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication. Genetics 171: 1455-1461.
-
(2005)
Genetics
, vol.171
, pp. 1455-1461
-
-
VAN HOOF, A.1
-
31
-
-
0036289574
-
Protein building blocks preserved by recombination
-
VOIGT, C. A., C. MARTINEZ, Z. G. WANG, S. L. MAYO and F. H. ARNOLD, 2002 Protein building blocks preserved by recombination. Nat. Struct. Biol. 9: 553-558.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 553-558
-
-
VOIGT, C.A.1
MARTINEZ, C.2
WANG, Z.G.3
MAYO, S.L.4
ARNOLD, F.H.5
-
32
-
-
0033850591
-
-
WANG, W., J. ZHANG, C. ALVAREZ, A. LLOPART and M. LONG, 2000 The origin of the jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Mol. Biol. Evol. 17: 1294-1301.
-
WANG, W., J. ZHANG, C. ALVAREZ, A. LLOPART and M. LONG, 2000 The origin of the jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Mol. Biol. Evol. 17: 1294-1301.
-
-
-
-
33
-
-
33747465505
-
High rate of chimeric gene origination by retroposition in plant genomes
-
WANG, W., H. ZHENG, C. FAN, J. LI, J. SHI et al., 2006 High rate of chimeric gene origination by retroposition in plant genomes. Plant Cell 18: 1791-1802.
-
(2006)
Plant Cell
, vol.18
, pp. 1791-1802
-
-
WANG, W.1
ZHENG, H.2
FAN, C.3
LI, J.4
SHI, J.5
-
34
-
-
38949119483
-
-
YANG, S., J. R. ARGUELLO, X. LI, Y. DING, Q. ZHOU et al., 2008 Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet. 4: e3.
-
YANG, S., J. R. ARGUELLO, X. LI, Y. DING, Q. ZHOU et al., 2008 Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet. 4: e3.
-
-
-
-
35
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
YANG, Z., 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
-
(1997)
Comput. Appl. Biosci
, vol.13
, pp. 555-556
-
-
YANG, Z.1
-
36
-
-
9244247603
-
Evolving protein functional diversity in new genes of Drosophila
-
ZHANG, J., A. M. DEAN, F. BRUNET and M. LONG, 2004 Evolving protein functional diversity in new genes of Drosophila. Proc. Natl. Acad. Sci. USA 101: 16246-16250.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 16246-16250
-
-
ZHANG, J.1
DEAN, A.M.2
BRUNET, F.3
LONG, M.4
-
37
-
-
50649097020
-
On the origin of new genes in Drosophila
-
ZHOU, Q., G. ZHANG, Y. ZHANG, S. XU, R. ZHAO et al., 2008 On the origin of new genes in Drosophila. Genome Res. 18: 1446-1455.
-
(2008)
Genome Res
, vol.18
, pp. 1446-1455
-
-
ZHOU, Q.1
ZHANG, G.2
ZHANG, Y.3
XU, S.4
ZHAO, R.5
|