메뉴 건너뛰기




Volumn 181, Issue 1, 2009, Pages 313-322

Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHIMERA; DROSOPHILA MELANOGASTER; GENE DUPLICATION; GENE MUTATION; GENE STRUCTURE; LONGEVITY; MISMATCH REPAIR; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NATURAL SELECTION; PRIORITY JOURNAL; ANIMAL; DNA REPLICATION; DUPLICATE GENE; GENE; GENETIC VARIABILITY; GENETICS; PHYLOGENY; STATISTICAL MODEL; TIME;

EID: 61549086519     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.091538     Document Type: Article
Times cited : (52)

References (37)
  • 3
    • 0038782391 scopus 로고    scopus 로고
    • Pannier and pointedP2 act sequentially to regulate Drosophila heart development
    • ALVAREZ, A. D., W. SHI, B. A. WILSON and J. B. SKEATH, 2003 Pannier and pointedP2 act sequentially to regulate Drosophila heart development. Development 130: 3015-3026.
    • (2003) Development , vol.130 , pp. 3015-3026
    • ALVAREZ, A.D.1    SHI, W.2    WILSON, B.A.3    SKEATH, J.B.4
  • 4
    • 0033052969 scopus 로고    scopus 로고
    • A hierarchical approach to protein molecular evolution
    • BOGARAD, L. D., and M. W. DEEM, 1999 A hierarchical approach to protein molecular evolution. Proc. Natl. Acad. Sci. USA 96: 2591-2595.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2591-2595
    • BOGARAD, L.D.1    DEEM, M.W.2
  • 5
    • 0033637328 scopus 로고    scopus 로고
    • Drosophila grain encodes a GATA transcription factor required for cell rearrangement during morphogenesis
    • BROWN, S., and J. CASTELLI-GAIR HOMBRIA, 2000 Drosophila grain encodes a GATA transcription factor required for cell rearrangement during morphogenesis. Development 127: 4867-4876.
    • (2000) Development , vol.127 , pp. 4867-4876
    • BROWN, S.1    CASTELLI-GAIR HOMBRIA, J.2
  • 6
    • 0037154157 scopus 로고    scopus 로고
    • Recombinatoric exploration of novel folded structures: A heteropolymer-based model of protein evolutionary landscapes
    • CUI, Y., W. H. WONG, E. BORNBERG-B AUER and H. S. CHAN, 2002 Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes. Proc. Natl. Acad. Sci. USA 99: 809-814.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 809-814
    • CUI, Y.1    WONG, W.H.2    BORNBERG, E.3    AUER, B.4    CHAN, H.S.5
  • 8
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • DROSOPHILA 12 GENOMES CONSORTIUM
    • DROSOPHILA 12 GENOMES CONSORTIUM, A. G. CLARK, M. B. EISEN, D. R. SMITH, C. M. BERGMAN et al., 2007 Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
    • (2007) Nature , vol.450 , pp. 203-218
    • CLARK, A.G.1    EISEN, M.B.2    SMITH, D.R.3    BERGMAN, C.M.4
  • 9
    • 0032893932 scopus 로고    scopus 로고
    • FORCE, A., M. LYNCH, F. B. PICKETT, A. AMORES, Y. L. YAN et al., 1999 Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
    • FORCE, A., M. LYNCH, F. B. PICKETT, A. AMORES, Y. L. YAN et al., 1999 Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
  • 10
    • 0032085975 scopus 로고    scopus 로고
    • Combinatorial protein design by in vitro recombination
    • GIVER, L., and F. H. ARNOLD, 1998 Combinatorial protein design by in vitro recombination. Curr. Opin. Chem. Biol. 2: 335-338.
    • (1998) Curr. Opin. Chem. Biol , vol.2 , pp. 335-338
    • GIVER, L.1    ARNOLD, F.H.2
  • 11
    • 23744452485 scopus 로고    scopus 로고
    • Estimating the tempo and mode of gene family evolution from comparative genomic data
    • HAHN, M. W., T. DE BIE, J. E. STAJICH, C. NGUYEN and N. CRISTIANINI, 2005 Estimating the tempo and mode of gene family evolution from comparative genomic data. Genome Res. 15: 1153-1160.
    • (2005) Genome Res , vol.15 , pp. 1153-1160
    • HAHN, M.W.1    DE BIE, T.2    STAJICH, J.E.3    NGUYEN, C.4    CRISTIANINI, N.5
  • 12
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 Drosophila genomes
    • HAHN, M. W., M. V. HAN and S. G. HAN, 2007 Gene family evolution across 12 Drosophila genomes. PLoS Genet. 3: e197.
    • (2007) PLoS Genet , vol.3
    • HAHN, M.W.1    HAN, M.V.2    HAN, S.G.3
  • 13
    • 23844533589 scopus 로고    scopus 로고
    • Parallel evolution of chimeric fusion genes
    • JONES, C. D., and D. J. BEGUN, 2005 Parallel evolution of chimeric fusion genes. Proc. Natl. Acad. Sci. USA 102: 11373-11378.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 11373-11378
    • JONES, C.D.1    BEGUN, D.J.2
  • 14
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • JURKA, J., 2000 Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16: 418-420.
    • (2000) Trends Genet , vol.16 , pp. 418-420
    • JURKA, J.1
  • 16
    • 42349111552 scopus 로고    scopus 로고
    • A universal classification of eukaryotic transposable elements implemented in repbase
    • KAPITONOV, V. V., and J. JURKA, 2008 A universal classification of eukaryotic transposable elements implemented in repbase. Nat. Rev. Genet. 9: 411-412.
    • (2008) Nat. Rev. Genet , vol.9 , pp. 411-412
    • KAPITONOV, V.V.1    JURKA, J.2
  • 17
    • 0027905006 scopus 로고
    • Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila
    • LONG, M., and C. H. LANGLEY, 1993 Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science 260: 91-95.
    • (1993) Science , vol.260 , pp. 91-95
    • LONG, M.1    LANGLEY, C.H.2
  • 18
    • 0032852328 scopus 로고    scopus 로고
    • Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila
    • LONG, M., W. WANG and J. ZHANG, 1999 Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila. Gene 238: 135-141.
    • (1999) Gene , vol.238 , pp. 135-141
    • LONG, M.1    WANG, W.2    ZHANG, J.3
  • 19
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • LYNCH, M., and J. S. CONERY, 2000 The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • LYNCH, M.1    CONERY, J.S.2
  • 20
    • 0037270015 scopus 로고    scopus 로고
    • The evolutionary demography of duplicate genes
    • LYNCH, M., and J. S. CONERY, 2003 The evolutionary demography of duplicate genes. J. Struct. Funct. Genomics 3: 35-44.
    • (2003) J. Struct. Funct. Genomics , vol.3 , pp. 35-44
    • LYNCH, M.1    CONERY, J.S.2
  • 21
    • 0033972072 scopus 로고    scopus 로고
    • LYNCH, M., and A. FORCE, 2000 The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
    • LYNCH, M., and A. FORCE, 2000 The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
  • 22
    • 0035697435 scopus 로고    scopus 로고
    • LYNCH, M., M. O'HELY, B. WALSH and A. FORCE, 2001 The probability of preservation of a newly arisen gene duplicate. Genetics 159: 1789-1804.
    • LYNCH, M., M. O'HELY, B. WALSH and A. FORCE, 2001 The probability of preservation of a newly arisen gene duplicate. Genetics 159: 1789-1804.
  • 23
    • 0347364640 scopus 로고    scopus 로고
    • The early stages of duplicate gene evolution
    • MOORE, R. C., and M. D. PURUGGANAN, 2003 The early stages of duplicate gene evolution. Proc. Natl. Acad. Sci. USA 100: 15682-15687.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 15682-15687
    • MOORE, R.C.1    PURUGGANAN, M.D.2
  • 24
    • 0030716471 scopus 로고    scopus 로고
    • Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution
    • NADEAU, J. H., and D. SANKOFF, 1997 Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution. Genetics 147: 1259-1266.
    • (1997) Genetics , vol.147 , pp. 1259-1266
    • NADEAU, J.H.1    SANKOFF, D.2
  • 26
    • 12944325779 scopus 로고    scopus 로고
    • An endoderm-specific GATA factor gene, dGATAe, is required for the terminal differentiation of the Drosophila endoderm
    • OKUMURA, T., A. MATSUMOTO, T. TANIMURA and R. MURAKAMI, 2005 An endoderm-specific GATA factor gene, dGATAe, is required for the terminal differentiation of the Drosophila endoderm. Dev. Biol. 278: 576-586.
    • (2005) Dev. Biol , vol.278 , pp. 576-586
    • OKUMURA, T.1    MATSUMOTO, A.2    TANIMURA, T.3    MURAKAMI, R.4
  • 27
    • 1242352089 scopus 로고    scopus 로고
    • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
    • TAMURA, K., S. SUBRAMANIAN and S. KUMAR, 2004 Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol. Biol. Evol. 21: 36-44.
    • (2004) Mol. Biol. Evol , vol.21 , pp. 36-44
    • TAMURA, K.1    SUBRAMANIAN, S.2    KUMAR, S.3
  • 28
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences
    • TATUSOVA, T. A., and T. L. MADDEN, 1999 BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174: 247-250.
    • (1999) FEMS Microbiol. Lett , vol.174 , pp. 247-250
    • TATUSOVA, T.A.1    MADDEN, T.L.2
  • 29
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS and T. J. GIBSON, 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • THOMPSON, J.D.1    HIGGINS, D.G.2    GIBSON, T.J.3
  • 30
    • 33645124787 scopus 로고    scopus 로고
    • Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication
    • VAN HOOF, A., 2005 Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication. Genetics 171: 1455-1461.
    • (2005) Genetics , vol.171 , pp. 1455-1461
    • VAN HOOF, A.1
  • 32
    • 0033850591 scopus 로고    scopus 로고
    • WANG, W., J. ZHANG, C. ALVAREZ, A. LLOPART and M. LONG, 2000 The origin of the jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Mol. Biol. Evol. 17: 1294-1301.
    • WANG, W., J. ZHANG, C. ALVAREZ, A. LLOPART and M. LONG, 2000 The origin of the jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Mol. Biol. Evol. 17: 1294-1301.
  • 33
    • 33747465505 scopus 로고    scopus 로고
    • High rate of chimeric gene origination by retroposition in plant genomes
    • WANG, W., H. ZHENG, C. FAN, J. LI, J. SHI et al., 2006 High rate of chimeric gene origination by retroposition in plant genomes. Plant Cell 18: 1791-1802.
    • (2006) Plant Cell , vol.18 , pp. 1791-1802
    • WANG, W.1    ZHENG, H.2    FAN, C.3    LI, J.4    SHI, J.5
  • 34
    • 38949119483 scopus 로고    scopus 로고
    • YANG, S., J. R. ARGUELLO, X. LI, Y. DING, Q. ZHOU et al., 2008 Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet. 4: e3.
    • YANG, S., J. R. ARGUELLO, X. LI, Y. DING, Q. ZHOU et al., 2008 Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet. 4: e3.
  • 35
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • YANG, Z., 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
    • (1997) Comput. Appl. Biosci , vol.13 , pp. 555-556
    • YANG, Z.1
  • 36
    • 9244247603 scopus 로고    scopus 로고
    • Evolving protein functional diversity in new genes of Drosophila
    • ZHANG, J., A. M. DEAN, F. BRUNET and M. LONG, 2004 Evolving protein functional diversity in new genes of Drosophila. Proc. Natl. Acad. Sci. USA 101: 16246-16250.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 16246-16250
    • ZHANG, J.1    DEAN, A.M.2    BRUNET, F.3    LONG, M.4
  • 37
    • 50649097020 scopus 로고    scopus 로고
    • On the origin of new genes in Drosophila
    • ZHOU, Q., G. ZHANG, Y. ZHANG, S. XU, R. ZHAO et al., 2008 On the origin of new genes in Drosophila. Genome Res. 18: 1446-1455.
    • (2008) Genome Res , vol.18 , pp. 1446-1455
    • ZHOU, Q.1    ZHANG, G.2    ZHANG, Y.3    XU, S.4    ZHAO, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.