Molecular characterization of the recombinant iron-containing alcohol dehydrogenase from the hyperthermophilic Archaeon, Thermococcus strain ES1

Extremophiles

Volumn 13, Issue 2, 2009, Pages 299-311

  Ying, Xiangxian ^a,d   Grunden, Amy M ^b   Nie, Lin ^a   Adams, Michael W W ^c   Ma, Kesen ^a  

^a UNIVERSITY OF WATERLOO   (Canada)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c University of Georgia ^*  (United States)

^d ZHEJIANG UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Archaea; Heterologous expression; Hyperthermophile; Iron containing alcohol dehydrogenase; Thermococcus

Indexed keywords

ALCOHOL DEHYDROGENASE; IRON; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARCHAEBACTERIUM; ARTICLE; CHEMISTRY; DNA SEQUENCE; KINETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; PH; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; TEMPERATURE; THERMOCOCCUS;

ALCOHOL DEHYDROGENASE; AMINO ACID SEQUENCE; ARCHAEA; CLONING, MOLECULAR; HYDROGEN-ION CONCENTRATION; IRON; KINETICS; MOLECULAR SEQUENCE DATA; NADP; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TEMPERATURE; THERMOCOCCUS;

ARCHAEA; ESCHERICHIA COLI; THERMOCOCCUS;

EID: 61449240010     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-008-0217-z     Document Type: Article

References (43)

1. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
2. E Antoine JL Rolland JP Raffin J Dietrich 1999 Cloning and over-expression in Escherichia coli of the gene encoding NADPH group III alcohol dehydrogenase from Thermococcus hydrothermalis Eur J Biochem 264 880 889
3. A Bateman E Birney L Cerruti R Durbin L Etwiller SR Eddy S Griffiths-Jones KL Howe M Marshall EL Sonnhammer 2002 The Pfam protein families database Nucleic Acids Res 30 276 280
4. MM Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254
5. R Cannio G Fiorentino P Carpinelli M Rossi S Bartolucci 1996 Cloning and overexpression in Escherichia coli of the genes encoding NAD-dependent alcohol dehydrogenase from two Sulfolobus species J Bacteriol 178 301 305
6. T Conway LO Ingram 1989 Similarity of Escherichia coli propanediol oxidoreductase (fucO product) and an unusual alcohol dehydrogenase from Zymomonas mobilis and Saccharomyces cerevisiae J Bacteriol 171 3754 3759
7. Delano WL (2002) The PyMOL molecular graphics system. Delano Scientific, Palo Alto
8. E Gasteiger C Hoogland A Gattiker S Duvaud MR Wilkins RD Appel A Bairoch 2005
9. N Guex MC Peitsch 1997 SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelling Electrophoresis 18 2714 2723
10. H Hirakawa N Kamiya Y Kawarabayashi T Nagamune 2004 Properties of an alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix K1 J Biosci Bioeng 97 202 206
11. CA Holland-Staley K Lee DP Clark PR Cunningham 2000 Aerobic activity of Escherichia coli alcohol dehydrogenase is determined by a single amino acid J Bacteriol 182 6049 6054
12. W Hummel 1999 Large-scale applications of NAD(P)-dependent oxidoreductases: recent developments Trends Biotechnol 17 487 492
13. KU Klages HW Morgan 1994 Characterization of an extremely thermophilic sulphur-metabolizing archaebacterium belonging to the Thermococcales Arch Microbiol 162 261 266
14. J Kopp T Schwede 2004 The SWISS-MODEL repository of annotated three-dimensional protein structure homology models Nucleic Acids Res 32 D230 D234
15. J Kube C Brokamp R Machielsen J van der Oost H Märkl 2006 Influence of temperature on the production of an archaeal thermoactive alcohol dehydrogenase from Pyrococcus furiosus with recombinant Escherichia coli Extremophiles 10 221 227
16. UK Laemmli 1970 Cleavage of structural proteins during assembly of the head of bacteriophage T4 Nature 227 680 685
17. JJ Leary DJ Brigati DC Ward 1983 Rapid and sensitive colorimetric method for visualization of biotin-labeled DNA probes hybridized to DNA or RNA immobilized on nitrocellulose: bioblots Proc Natl Acad Sci USA 80 4045 4049
18. D Li KJ Stevenson 1997 Purification and sequence analysis of a novel NADP(H)-dependent type III alcohol dehydrogenase from Thermococcus strain AN1 J Bacteriol 179 4433 4437
19. Z Lu E Cabiscol N Obradors J Tamarit J Ros J Aguilar ECC Lin 1998 Evolution of an Escherichia coli protein with increased resistance to oxidative stress J Biol Chem 273 8308 8316
20. K Ma MWW Adams 1999 An unusual oxygen-sensitive, iron- and zinc-containing alcohol dehydrogenase from the hyperthermophilic archaeon, Pyrococcus furiosus J Bacteriol 181 1163 1170
21. K Ma MWW Adams 2001 Alcohol dehydrogenases from Thermococcus litoralis and Thermococcus strain ES-1 Meth Enzymol 331 195 201
22. K Ma H Loessner J Heider MK Johnson MWW Adams 1995 Effects of elemental sulfur on the metabolism of the deep-sea hyperthermophilic archaeon Thermococcus strain ES-1: characterization of a sulfur-regulated, non-heme iron alcohol dehydrogenase J Bacteriol 177 4748 4756
23. K Ma FT Robb MWW Adams 1994 Purification and characterization of NADP-specific alcohol dehydrogenase and glutamate dehydrogenase from the hyperthermophilic archaeon Thermococcus litoralis Appl Environ Microbiol 60 562 568
24. R Machielsen AR Uria SWM Kengen J van der Oost 2006 Production and characterization of a thermostable alcohol dehydrogenase that belongs to the aldo-keto reductase superfamily Appl Environ Microbiol 72 233 238
25. C Montella L Bellsolell R Pérez-Luque J Badía L Baldoma M Coll J Aguilar 2005 Crystal structure of an iron-dependent group III dehydrogenase that interconverts l-lactaldehyde and l-1,2-propanediol in Escherichia coli J Bacteriol 187 4957 4966
26. AD Neale RK Scopes JM Kelly RE Wettenhall 1986 The two alcohol dehydrogenases of Zymomonas mobilis. Purification by differential dye ligand chromatography, molecular characterisation and physiological roles Eur J Biochem 154 119 124
27. A Neuner HW Jannasch S Belkin KO Stetter 1989 Thermococcus litoralis sp. nov.: a new species of extremely thermophilic marine archaebacteria Arch Microbiol 153 205 207
28. MC Peitsch 1995 Protein modeling by E-mail Bio Technol 13 658 660
29. RJ Pledger J Baross 1989 Characterization of an extremely thermophilic archaebacterium isolated from a black smoker polychaete (Paralvinella, sp.) at the Juan de Fuca Ridge Syst Appl Microbiol 12 249 256
30. MF Reid CA Fewson 1994 Molecular characterization of microbial alcohol dehydrogenases Crit Rev Microbiol 20 13 56
31. RS Ronimus AL Reysenbach DR Musgrave HW Morgan 1997 The phylogenetic position of the Thermococcus isolate AN1 based on 16S rRNA gene sequence analysis: a proposal that AN1 represents a new species, Thermococcus zilligii sp. nov Arch Microbiol 168 245 248
32. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
33. R Schwarzenbacher F von Delft JM Canaves LS Brinen X Dai AM Deacon MA Elsliger S Eshaghi R Floyd A Godzik C Grittini SK Grzechnik C Guba L Jaroszewski C Karlak HE Klock E Koesema JE Kovarik A Kreusch P Kuhn SA Lesley D McMullan TM McPhillips MA Miller MD Miller A Morse K Moy J Ouyang R Page A Robb K Rodrigues TL Selby G Spraggon RC Stevens H van den Bedem J Velasquez J Vincent X Wang B West G Wolf KO Hodgson J Wooley IA Wilson 2004 Crystal structure of an iron-containing 1,3-propanediol dehydrogenase (TM0920) from Thermotoga maritima at 1.3 Å resolution Proteins 54 174 177
34. T Schwede J Kopp N Guex MC Peitsch 2003 SWISS-MODEL: an automated protein homology-modeling server Nucleic Acids Res 31 3381 3385
35. KO Stetter 1988 Hyperthermophiles-physiology and enzymes J Chem Technol Biotechnol 42 315 317
36. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
37. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
38. G Unden S Becker J Bongaerts J Schirawski S Six 1994 Oxygen regulated gene expression in facultatively anaerobic bacteria Antonie Leeuwenhoek 66 3 23
39. J van der Oost WGB Voorhorst SWM Kengen ACM Geerling V Wittenhorst Y Gueguen WM de Vos 2001 Genetic and biochemical characterization of a short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus Eur J Biochem 268 3062 3068
40. KA Walter GN Bennett ET Papoutsakis 1992 Molecular characterization of two Clostridium acetobutylicum ATCC 824 butanol dehydrogenase isozyme genes J Bacteriol 174 7149 7158
41. Ying X (2007) Characterization of iron- and zinc-containing alcohol dehydrogenases from anaerobic hyperthermophiles. PhD Thesis, University of Waterloo, Waterloo, Canada. http://hdl.handle.net/10012/3446
42. X Ying Y Wang HR Badiei V Karanassios K Ma 2007 Purification and characterization of an iron-containing alcohol dehydrogenase in extremely thermophilic bacterium Thermotoga hypogea Arch Microbiol 187 499 510
43. Y Zheng Y Cao B Fang 2004 Cloning and sequence analysis of the dhaT gene of the 1,3-propanediol regulon from Klebsiella pneumoniae Biotechnol Lett 26 251 255