메뉴 건너뛰기




Volumn 45, Issue 3, 2009, Pages 845-854

Automatic cropping of MRI rat brain volumes using pulse coupled neural networks

Author keywords

Brain cropping; Neural networks; PCNN; Segmentation; Small mammals

Indexed keywords

ALGORITHM; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; ARTIFICIAL NEURAL NETWORK; BRAIN SIZE; CONTROLLED STUDY; IMAGING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; OPTICAL RESOLUTION; PRIORITY JOURNAL; RAT; SCORING SYSTEM;

EID: 61449210705     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2008.12.021     Document Type: Article
Times cited : (31)

References (54)
  • 1
    • 0032709896 scopus 로고    scopus 로고
    • Model creation and deformation for the automatic segmentation of the brain in MR images
    • Aboutanos G.B., Nikanne J., Watkins N., and Dawant B.M. Model creation and deformation for the automatic segmentation of the brain in MR images. IEEE Trans. Biomed. Eng. 46 11 (1999) 1346-1356
    • (1999) IEEE Trans. Biomed. Eng. , vol.46 , Issue.11 , pp. 1346-1356
    • Aboutanos, G.B.1    Nikanne, J.2    Watkins, N.3    Dawant, B.M.4
  • 2
    • 40649095193 scopus 로고    scopus 로고
    • Enhanced brain extraction improves the accuracy of brain atrophy estimation
    • Battaglini M., Smith S.M., Brogi S., and De Stefano N. Enhanced brain extraction improves the accuracy of brain atrophy estimation. NeuroImage 40 (2008) 583-589
    • (2008) NeuroImage , vol.40 , pp. 583-589
    • Battaglini, M.1    Smith, S.M.2    Brogi, S.3    De Stefano, N.4
  • 5
    • 48549104525 scopus 로고    scopus 로고
    • Electric stimulation fMRI of the perforant pathway to the rat hippocampus
    • Canals S., Beyerlein M., Murayama Y., and Logothetis N.K. Electric stimulation fMRI of the perforant pathway to the rat hippocampus. Magn. Reson. Imaging 26 (2008) 978-986
    • (2008) Magn. Reson. Imaging , vol.26 , pp. 978-986
    • Canals, S.1    Beyerlein, M.2    Murayama, Y.3    Logothetis, N.K.4
  • 6
    • 0032630626 scopus 로고    scopus 로고
    • Finding the shortest path in the shortest time using PCNN's
    • Caulfield H.J., and Kinser J.M. Finding the shortest path in the shortest time using PCNN's. IEEE Trans. Neural Netw. 10 (1999) 604-606
    • (1999) IEEE Trans. Neural Netw. , vol.10 , pp. 604-606
    • Caulfield, H.J.1    Kinser, J.M.2
  • 7
    • 0030316081 scopus 로고    scopus 로고
    • Tissue segmentation of MRI of the head by means of a kohonen map. Engineering in Medicine and Biology Society, 1996. Bridging Disciplines for Biomedicine
    • Congorto S., Penna S.D., and Erne S.N. Tissue segmentation of MRI of the head by means of a kohonen map. Engineering in Medicine and Biology Society, 1996. Bridging Disciplines for Biomedicine. Proc. 18th Annu. Int. Conf. IEEE 3 (1996) 1087-1088
    • (1996) Proc. 18th Annu. Int. Conf. IEEE , vol.3 , pp. 1087-1088
    • Congorto, S.1    Penna, S.D.2    Erne, S.N.3
  • 8
    • 0032769093 scopus 로고    scopus 로고
    • Cortical surface-based analysis: I. Segmentation and surface reconstruction
    • Dale A.M., Fischl B., and Sereno M.I. Cortical surface-based analysis: I. Segmentation and surface reconstruction. NeuroImage 9 (1999) 179-194
    • (1999) NeuroImage , vol.9 , pp. 179-194
    • Dale, A.M.1    Fischl, B.2    Sereno, M.I.3
  • 9
    • 28744453924 scopus 로고    scopus 로고
    • Segmentation of skull and scalp in 3-D human MRI using mathematical morphology
    • Dogdas B., Shattuck D.W., and Leahy R.M. Segmentation of skull and scalp in 3-D human MRI using mathematical morphology. Hum. Brain Mapp. 26 (2005) 273-285
    • (2005) Hum. Brain Mapp. , vol.26 , pp. 273-285
    • Dogdas, B.1    Shattuck, D.W.2    Leahy, R.M.3
  • 11
    • 0001219231 scopus 로고
    • Feature linking via synchronization among distributed assemblies: simulations of results from cat visual cortex
    • Eckhorn R., Reitboeck H.J., Arndt M., and Dicke P. Feature linking via synchronization among distributed assemblies: simulations of results from cat visual cortex. Neural Comput. 2 (1990) 293-307
    • (1990) Neural Comput. , vol.2 , pp. 293-307
    • Eckhorn, R.1    Reitboeck, H.J.2    Arndt, M.3    Dicke, P.4
  • 14
    • 12144261188 scopus 로고    scopus 로고
    • Pup suckling is more rewarding than cocaine: evidence from functional magnetic resonance imaging and three-dimensional computational analysis
    • Ferris C.F., Kulkarni P., Sullivan Jr. J.M., Harder J.A., Messenger T.L., and Febo M. Pup suckling is more rewarding than cocaine: evidence from functional magnetic resonance imaging and three-dimensional computational analysis. J. Neurosci. 25 (2005) 149-156
    • (2005) J. Neurosci. , vol.25 , pp. 149-156
    • Ferris, C.F.1    Kulkarni, P.2    Sullivan Jr., J.M.3    Harder, J.A.4    Messenger, T.L.5    Febo, M.6
  • 16
    • 2942527046 scopus 로고    scopus 로고
    • Image thinning using pulse coupled neural network
    • Gu X., Yu D., and Zhang L. Image thinning using pulse coupled neural network. Pattern Recogn. Lett. 25 (2004) 1075-1084
    • (2004) Pattern Recogn. Lett. , vol.25 , pp. 1075-1084
    • Gu, X.1    Yu, D.2    Zhang, L.3
  • 18
    • 84980090975 scopus 로고
    • The distribution of the flora in the alpine zone
    • Jaccard P. The distribution of the flora in the alpine zone. New Phytol. 11 2 (1912) 37-50
    • (1912) New Phytol. , vol.11 , Issue.2 , pp. 37-50
    • Jaccard, P.1
  • 20
    • 0033201360 scopus 로고    scopus 로고
    • Elastic model-based segmentation of 3-D neuroradiological data sets
    • Kelemen A., Szekely G., and Gerig G. Elastic model-based segmentation of 3-D neuroradiological data sets. IEEE Trans. Med. Imag. 18 (1999) 828-839
    • (1999) IEEE Trans. Med. Imag. , vol.18 , pp. 828-839
    • Kelemen, A.1    Szekely, G.2    Gerig, G.3
  • 22
    • 0032688528 scopus 로고    scopus 로고
    • Perfect image segmentation using pulse coupled neural networks
    • Kuntimad G., and Ranganath H.S. Perfect image segmentation using pulse coupled neural networks. IEEE Trans. Neural Netw. 10 (1999) 591-598
    • (1999) IEEE Trans. Neural Netw. , vol.10 , pp. 591-598
    • Kuntimad, G.1    Ranganath, H.S.2
  • 23
    • 0032071267 scopus 로고    scopus 로고
    • Unsupervised connectivity-based thresholding segmentation of midsagittal brain MR images
    • Lee C., Huh S., Ketter T.A., and Unser M. Unsupervised connectivity-based thresholding segmentation of midsagittal brain MR images. Comput. Biol. Med. 28 (1998) 309-338
    • (1998) Comput. Biol. Med. , vol.28 , pp. 309-338
    • Lee, C.1    Huh, S.2    Ketter, T.A.3    Unser, M.4
  • 24
    • 1542397929 scopus 로고    scopus 로고
    • Evaluation of automated and semi-automated skull-stripping algorithms using similarity index and segmentation error
    • Lee J., Yoon U., Nam S.H., Kim J., Kim I., and Kim S.I. Evaluation of automated and semi-automated skull-stripping algorithms using similarity index and segmentation error. Comput. Biol. Med. 33 (2003) 495-507
    • (2003) Comput. Biol. Med. , vol.33 , pp. 495-507
    • Lee, J.1    Yoon, U.2    Nam, S.H.3    Kim, J.4    Kim, I.5    Kim, S.I.6
  • 28
    • 33947202128 scopus 로고    scopus 로고
    • Small animal, whole brain fMRI: innocuous and nociceptive forepaw stimulation
    • Lowe A.S., Beech J.S., and Williams S.C.R. Small animal, whole brain fMRI: innocuous and nociceptive forepaw stimulation. NeuroImage 35 (2007) 719-728
    • (2007) NeuroImage , vol.35 , pp. 719-728
    • Lowe, A.S.1    Beech, J.S.2    Williams, S.C.R.3
  • 29
    • 33847786566 scopus 로고    scopus 로고
    • Cocaine-induced brain activation detected by dynamic manganese-enhanced magnetic resonance imaging (MEMRI)
    • Lu H., Xi Z., Gitajn L., Rea W., Yang Y., and Stein E.A. Cocaine-induced brain activation detected by dynamic manganese-enhanced magnetic resonance imaging (MEMRI). Proc. Natl. Acad. Sci. 104 (2007) 2489-2494
    • (2007) Proc. Natl. Acad. Sci. , vol.104 , pp. 2489-2494
    • Lu, H.1    Xi, Z.2    Gitajn, L.3    Rea, W.4    Yang, Y.5    Stein, E.A.6
  • 30
    • 55049094267 scopus 로고    scopus 로고
    • Real-time animal functional magnetic resonance imaging and its application to neuropharmacological studies
    • Lu H., Yang S., Zuo Y., Demny S., Stein E.A., and Yang Y. Real-time animal functional magnetic resonance imaging and its application to neuropharmacological studies. Magnetic Resonance Imaging 26 9 (2008) 1266-1272
    • (2008) Magnetic Resonance Imaging , vol.26 , Issue.9 , pp. 1266-1272
    • Lu, H.1    Yang, S.2    Zuo, Y.3    Demny, S.4    Stein, E.A.5    Yang, Y.6
  • 31
    • 0345736927 scopus 로고    scopus 로고
    • A dual RF resonator system for high-field functional magnetic resonance imaging of small animals
    • Ludwig R., Bodgdanov G., King J., Allard A., and Ferris C.F. A dual RF resonator system for high-field functional magnetic resonance imaging of small animals. J. Neurosci. Methods 132 (2004) 125-135
    • (2004) J. Neurosci. Methods , vol.132 , pp. 125-135
    • Ludwig, R.1    Bodgdanov, G.2    King, J.3    Allard, A.4    Ferris, C.F.5
  • 32
    • 44449167622 scopus 로고    scopus 로고
    • Fully automatic segmentation of the brain from T1-weighted MRI using bridge burner algorithm
    • Mikheev A., Nevsky G., Govindan S., Grossman R., and Rusinek H. Fully automatic segmentation of the brain from T1-weighted MRI using bridge burner algorithm. J. Magn. Reson. Imaging 27 (2008) 1235-1241
    • (2008) J. Magn. Reson. Imaging , vol.27 , pp. 1235-1241
    • Mikheev, A.1    Nevsky, G.2    Govindan, S.3    Grossman, R.4    Rusinek, H.5
  • 33
    • 0037381987 scopus 로고    scopus 로고
    • Pattern recognition using pulse-coupled neural networks and discrete Fourier transforms
    • Muresan R.C. Pattern recognition using pulse-coupled neural networks and discrete Fourier transforms. Neurocomputing 51 (2003) 487-493
    • (2003) Neurocomputing , vol.51 , pp. 487-493
    • Muresan, R.C.1
  • 35
    • 7044274251 scopus 로고    scopus 로고
    • In vivo structural imaging of the rat brain with a 3-T clinical human scanner
    • Pfefferbaum A., Adalsteinsson E., and Sullivan E.V. In vivo structural imaging of the rat brain with a 3-T clinical human scanner. J. Magn. Reson. Imaging 20 (2004) 779-785
    • (2004) J. Magn. Reson. Imaging , vol.20 , pp. 779-785
    • Pfefferbaum, A.1    Adalsteinsson, E.2    Sullivan, E.V.3
  • 36
    • 0034575445 scopus 로고    scopus 로고
    • Current methods in medical image segmentation
    • Pham D.L., Xu C., and Prince J.L. Current methods in medical image segmentation. Annu. Rev. Biomed. Eng. 2 (2000) 315-337
    • (2000) Annu. Rev. Biomed. Eng. , vol.2 , pp. 315-337
    • Pham, D.L.1    Xu, C.2    Prince, J.L.3
  • 37
    • 36048967893 scopus 로고    scopus 로고
    • Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures
    • Powell S., Magnotta V.A., Johnson H., Jammalamadaka V.K., Pierson R., and Andreasen N.C. Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures. NeuroImage 39 (2008) 238-247
    • (2008) NeuroImage , vol.39 , pp. 238-247
    • Powell, S.1    Magnotta, V.A.2    Johnson, H.3    Jammalamadaka, V.K.4    Pierson, R.5    Andreasen, N.C.6
  • 38
    • 0031283432 scopus 로고    scopus 로고
    • Automated segmentation and classification of multispectral magnetic resonance images of brain using artificial neural networks
    • Reddick W.E., Glass J.O., Cook E.N., Elkin T.D., and Deaton R.J. Automated segmentation and classification of multispectral magnetic resonance images of brain using artificial neural networks. IEEE Trans. Med. Imag. 16 (1997) 911-918
    • (1997) IEEE Trans. Med. Imag. , vol.16 , pp. 911-918
    • Reddick, W.E.1    Glass, J.O.2    Cook, E.N.3    Elkin, T.D.4    Deaton, R.J.5
  • 39
    • 3042692091 scopus 로고    scopus 로고
    • Putting our heads together: a consensus approach to brain/non-brain segmentation in T1-weighted MR volumes
    • Rehm K., Schaper K., Anderson J., Woods R., Stoltzner S., and Rottenberg D. Putting our heads together: a consensus approach to brain/non-brain segmentation in T1-weighted MR volumes. NeuroImage 22 (2004) 1262-1270
    • (2004) NeuroImage , vol.22 , pp. 1262-1270
    • Rehm, K.1    Schaper, K.2    Anderson, J.3    Woods, R.4    Stoltzner, S.5    Rottenberg, D.6
  • 41
    • 33646164883 scopus 로고    scopus 로고
    • Preservation of striatal tissue and behavioral function after neural stem cell transplantation in a rat model of Huntington's disease
    • Roberts T.J., Price J., Williams S.C.R., and Modo M. Preservation of striatal tissue and behavioral function after neural stem cell transplantation in a rat model of Huntington's disease. Neuroscience 139 (2006) 1187-1199
    • (2006) Neuroscience , vol.139 , pp. 1187-1199
    • Roberts, T.J.1    Price, J.2    Williams, S.C.R.3    Modo, M.4
  • 42
    • 33746620085 scopus 로고    scopus 로고
    • A stereotaxic MRI template set for the rat brain with tissue class distribution maps and co-registered anatomical atlas: application to pharmacological MRI
    • Schwarz A.J., Danckaert A., Reese T., Gozzi A., Paxinos G., Watson C., Merlo-Pich E.V., and Bifone A. A stereotaxic MRI template set for the rat brain with tissue class distribution maps and co-registered anatomical atlas: application to pharmacological MRI. NeuroImage 32 (2006) 538-550
    • (2006) NeuroImage , vol.32 , pp. 538-550
    • Schwarz, A.J.1    Danckaert, A.2    Reese, T.3    Gozzi, A.4    Paxinos, G.5    Watson, C.6    Merlo-Pich, E.V.7    Bifone, A.8
  • 43
    • 33846561078 scopus 로고    scopus 로고
    • In vivo mapping of functional connectivity in neurotransmitter systems using pharmacological MRI
    • Schwarz A.J., Gozzi A., Reese T., and Bifone A. In vivo mapping of functional connectivity in neurotransmitter systems using pharmacological MRI. NeuroImage, 34 (2007) 1627-1636
    • (2007) NeuroImage , vol.34 , pp. 1627-1636
    • Schwarz, A.J.1    Gozzi, A.2    Reese, T.3    Bifone, A.4
  • 45
    • 36049017075 scopus 로고    scopus 로고
    • Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy
    • Sharief A.A., Badea A., Dale A.M., and Johnson G.A. Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. NeuroImage 39 (2008) 136-145
    • (2008) NeuroImage , vol.39 , pp. 136-145
    • Sharief, A.A.1    Badea, A.2    Dale, A.M.3    Johnson, G.A.4
  • 47
    • 0036828879 scopus 로고    scopus 로고
    • Fast robust automated brain extraction
    • Smith S.M. Fast robust automated brain extraction. Hum. Brain Mapp. 17 (2002) 143-155
    • (2002) Hum. Brain Mapp. , vol.17 , pp. 143-155
    • Smith, S.M.1
  • 48
    • 0033664334 scopus 로고    scopus 로고
    • Functional MRI at 4.7 tesla of the rat brain during electric stimulation of forepaw, hindpaw, or tail in single- and multislice experiments
    • Spenger C., Josephson A., Klason T., Hoehn M., Schwindt W., Ingvar M., and Olson L. Functional MRI at 4.7 tesla of the rat brain during electric stimulation of forepaw, hindpaw, or tail in single- and multislice experiments. Exp. Neurol. 166 (2000) 246-253
    • (2000) Exp. Neurol. , vol.166 , pp. 246-253
    • Spenger, C.1    Josephson, A.2    Klason, T.3    Hoehn, M.4    Schwindt, W.5    Ingvar, M.6    Olson, L.7
  • 51
    • 0034059879 scopus 로고    scopus 로고
    • Patterns from the sky: satellite image analysis using pulse coupled neural networks for pre-processing, segmentation and edge detection
    • Waldemark K., Lindblad T., Becanovic V., Guillen J.L.L., and Klingner P.L. Patterns from the sky: satellite image analysis using pulse coupled neural networks for pre-processing, segmentation and edge detection. Pattern Recogn. Lett. 21 (2000) 227-237
    • (2000) Pattern Recogn. Lett. , vol.21 , pp. 227-237
    • Waldemark, K.1    Lindblad, T.2    Becanovic, V.3    Guillen, J.L.L.4    Klingner, P.L.5
  • 52
    • 4043058154 scopus 로고    scopus 로고
    • A parallel algebraic multigrid solver for finite element method based source localization in the human brain
    • Wolters C.H., Kuhn M., Anwander A., and Reitzinger S. A parallel algebraic multigrid solver for finite element method based source localization in the human brain. Comput. Vis. Sci. 5 (2002) 165-177
    • (2002) Comput. Vis. Sci. , vol.5 , pp. 165-177
    • Wolters, C.H.1    Kuhn, M.2    Anwander, A.3    Reitzinger, S.4
  • 54
    • 33748654013 scopus 로고    scopus 로고
    • Skull-stripping magnetic resonance brain images using a model-based level set
    • Zhuang A.H., Valentino D.J., and Toga A.W. Skull-stripping magnetic resonance brain images using a model-based level set. NeuroImage 32 (2006) 79-92
    • (2006) NeuroImage , vol.32 , pp. 79-92
    • Zhuang, A.H.1    Valentino, D.J.2    Toga, A.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.