Assessment of genetic diversity in cashew germplasm using RAPD and ISSR markers

Scientia Horticulturae

Volumn 120, Issue 3, 2009, Pages 411-417

  Thimmappaiah, ^a   Santhosh, W G ^a   Shobha, D ^a   Melwyn, G S ^a  

^a INDIAN COUNCIL OF AGRICULTURAL RESEARCH   (India)

Author keywords

Accessions; Cashew; Diversity; Germplasm; ISSR; RAPD

Indexed keywords

GENE EXPRESSION; GENETIC MARKER; GENETIC VARIATION; GERMPLASM; MORPHOLOGY; NUT; POLYMORPHISM;

ANACARDIUM OCCIDENTALE;

EID: 61449189717     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2008.11.022     Document Type: Article

References (23)

1. Archak S., Gaikwad A.B., Gautum D., Rao E.V.V.B., Swamy K.R.M., and Karihaloo J.L. DNA fingerprinting of Indian cashew (Anacardium occidentale L.) varieties using RAPD and ISSR techniques. Euphytica 230 (2003) 397-404
2. Dhanaraj A.L., Rao E.V.V.B., Swamy K.R.M., Bhat M.G., Prasad D.T., and Sondur S.N. Using RAPDs to assess the diversity in Indian Cashew (Anacardium occidentale L.) germplasm. J. Hort. Sci. Biotechnol. 77 1 (2002) 41-47
3. Dice L.R. Measures of the amount of ecological association between species. Ecology 26 (1945) 297-303
4. Gonzalez A., Wong A., Delgado-Salinas A., Papa R., and Gepts P. Assessment of ISSR markers to differentiate sympatric wild and domesticated populations of Common Bean. Crop Sci. 45 (2005) 606-615
5. Kafkas S., Ozkan H., Ak B.E., Acar I., Alti H.S., and Koyuncu S. Detecting DNA polymorphism and genetic diversity in a wide pistachio germplasm: comparison of AFLP, ISSR and RAPD markers. J. Am. Soc Hortic. Sci. 131 4 (2006) 522-529
6. Manimekalai R., and Nagarajan P. Assessing genetic relationships among coconut (Cocos nucifera L.) accessions using inter simple sequence repeat markers. Sci. Hortic. 108 1 (2006) 49-54
7. Mantel N.A. The detection of disease clustering and a generalized regression approach. Cancer Res. 27 (1967) 209-220
8. Mneney E.E., Mantell S.H., and Bennett M. Use of random amplified polymorphic DNA (RAPD) markers to reveal genetic diversity within and between populations of cashew (Anacardium occidentale L.). J. Hort. Sci. Biotechnol. 76 (2001) 375-383
9. Mneney E.E., Mantell S.H., Tsoktonidis G., Amin S., Bessa A.M.S., and Thangavelu M. RAPD profiling of Tanzanian Cashew (Anacardium occidentale L.). International Cashew and Cocoa Conference. Dar es Salaam (1997) 108-115
10. Neto Silva S.P., Maruta I., Takaiwa F., Oono K., and Matsumoto K. Identification of cashew (Anacardium occidentale L.) seedlings with RAPD markers. Acta Hortic. 370 (1995) 21-26
11. Powell W., Morgante M., Andre C., Hanafey M., Voges J., Tingey S., and Rafalski A. A comparison of RAPD, RFLP, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2 (1996) 230-236
12. Qiao H., GuoLu L., JiangHui X., and WeiCai L. Genetic diversity analysis of wax apple germplasm by ISSR markers. Acta Hortic.-Sin. 33 2 (2006) 392-394
13. Rao E.V.V.B., and Swamy K.R.M. Genetic resources of cashew. In: Chadha K.L., and Rethinam P. (Eds). Advances in Horticulture, vol. 9: Plantation and Spice Crops, Part I (1994), Malhotra Publishing House, New Delhi 79-97
14. Rohlf F.J. NTSYS-pc Numerical Taxonomy and Multivariate Analysis System, Version 2.02 (1998), Exeter Publishing Ltd., Setauket, New York, USA
15. Ravishankar K.V., Chandrashekara P., Sreedhara S.A., Dinesh M.R., Anand L., and Saiprasad G.V.S. Diverse genetic bases of Indian polyembryonic and monoembryonic mango (Mangifera indica L.) cultivars. Curr. Sci. 87 7 (2004) 870-871
16. Samal A., Lenka P.C., Nanda R.M., Nayak S., Rout G.R., and Das P. Genetic relatedness in cashew (Anacardium occidentale L.) germplasm collections as determined by randomly amplified polymorphic DNA. Genet. Res. Crop Evol. 51 2 (2004) 161-166
17. Schnell R.J., Ronning C.M., and Knight Jr. R.J. Identification of cultivars and validation of genetic relationships in Mangifera indica L. using RAPD markers. Theor. Appl. Genet. 90 2 (1995) 269-274
18. Smith J.S.C., Chin E.C.L., Shu O.S., Wall S.J., Senior M.L., Mitchel S.E., Kresovich S., and Ziegle J. An evaluation of SSR loci as molecular markers in maize (Zea mays L.): comparison with data from AFLPs and pedigree. Theor. Appl. Genet. 95 (1997) 163-173
19. Sneath P.H.A., and Sokal R.R. Numerical Taxonomy (1973), Freemen, San Francisco, CA
20. Swamy, K.R.M., Bhat, M.G., Rao, E.V.V.B., 2002. Developing a core collection of cashew (Anacardium occidentale L.). In: Rethinam, P., Khan, H.H., Reddy, V.M., Mandal, P.K., Suresh, K. (Eds.), Plantation Crops Research and Development in the New Millennium, Proceedings of PLACROSYM XIV, Coconut Development Board, Kochi, India, pp. 245-248.
21. Waugh R., and Powell W. Using RAPD markers for crop improvement. Trends Biotechnol. 10 (1992) 186-191
22. Williams G.J.K., Kubelik A.R., Livak K.J., Rafalski J.A., and Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res. 18 22 (1990) 6531-6536
23. Yap V., and Nelson R.J. WinBoot: A Programme for Performing Bootstrap Analysis of Binary Data to Determine the Confidence Limits of UPGMA-based on Dendrograms (1996), IRRI, International Rice Research Institute, Manila, Philippines. http://irri.org/science/software/winboot.asp Available from http://irri.org/science/software/winboot.asp (online)