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Volumn 69, Issue 4, 2009, Pages 417-428

A scalable, parallel algorithm for maximal clique enumeration

Author keywords

Biological networks; Cray XT; Dynamic load balancing; High performance computing; Maximal clique enumeration; Parallel graph algorithms

Indexed keywords

COMPUTER ARCHITECTURE; DYNAMIC LOADS; DYNAMIC PROGRAMMING; GENE EXPRESSION; PARALLEL ARCHITECTURES; TREES (MATHEMATICS);

EID: 61449140888     PISSN: 07437315     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jpdc.2009.01.003     Document Type: Article
Times cited : (134)

References (41)
  • 2
    • 0004392821 scopus 로고
    • The enumeration of maximal cliques of large graphs
    • Akkoyunlu E.A. The enumeration of maximal cliques of large graphs. SIAM Journal on Computing 2 1 (1973) 1-6
    • (1973) SIAM Journal on Computing , vol.2 , Issue.1 , pp. 1-6
    • Akkoyunlu, E.A.1
  • 4
    • 0014856267 scopus 로고
    • An analysis of some graph theoretical cluster techniques
    • Augustson J.G., and Minker J. An analysis of some graph theoretical cluster techniques. Journal of the ACM 17 4 (1970) 571-588
    • (1970) Journal of the ACM , vol.17 , Issue.4 , pp. 571-588
    • Augustson, J.G.1    Minker, J.2
  • 5
  • 10
    • 84976668743 scopus 로고
    • Algorithm 457: Finding all cliques of an undirected graph
    • Bron C., and Kerbosch J. Algorithm 457: Finding all cliques of an undirected graph. Communications of the ACM 16 9 (1973) 575-577
    • (1973) Communications of the ACM , vol.16 , Issue.9 , pp. 575-577
    • Bron, C.1    Kerbosch, J.2
  • 12
    • 28844438017 scopus 로고    scopus 로고
    • A novel approach to structural alignment using realistic structural and environmental information
    • Chen Y., and Crippen G.M. A novel approach to structural alignment using realistic structural and environmental information. Protein Science 14 12 (2005) 2935-2946
    • (2005) Protein Science , vol.14 , Issue.12 , pp. 2935-2946
    • Chen, Y.1    Crippen, G.M.2
  • 13
    • 0022011993 scopus 로고
    • Arboricity and subgraph listing algorithms
    • Chiba N., and Nishizeki T. Arboricity and subgraph listing algorithms. SIAM Journal on Computing 14 1 (1985) 210-223
    • (1985) SIAM Journal on Computing , vol.14 , Issue.1 , pp. 210-223
    • Chiba, N.1    Nishizeki, T.2
  • 15
    • 43749119258 scopus 로고    scopus 로고
    • A parallel algorithm for enumerating all maximal cliques in complex network
    • N. Du, W. Bin, X. Liutong, W. Bai, P. Xin, A parallel algorithm for enumerating all maximal cliques in complex network, in: Proc. of ICDM Workshops, 2006, pp. 320-324
    • (2006) Proc. of ICDM Workshops , pp. 320-324
    • Du, N.1    Bin, W.2    Liutong, X.3    Bai, W.4    Xin, P.5
  • 17
    • 0027511808 scopus 로고
    • Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm
    • Grindley H.M., Artymiuk P.J., Rice D.W., and Willett P. Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm. Journal of Molecular Biology 229 3 (1993) 707-721
    • (1993) Journal of Molecular Biology , vol.229 , Issue.3 , pp. 707-721
    • Grindley, H.M.1    Artymiuk, P.J.2    Rice, D.W.3    Willett, P.4
  • 18
    • 0034958818 scopus 로고    scopus 로고
    • Uniform integration of genome mapping data using intersection graphs
    • Harley E., Bonner A., and Goodman N. Uniform integration of genome mapping data using intersection graphs. Bioinformatics 17 6 (2001) 487-494
    • (2001) Bioinformatics , vol.17 , Issue.6 , pp. 487-494
    • Harley, E.1    Bonner, A.2    Goodman, N.3
  • 19
    • 85050416152 scopus 로고
    • A procedure for clique detection using the group matrix
    • Harary F., and Ross I.C. A procedure for clique detection using the group matrix. Sociometry 20 3 (1957) 205-215
    • (1957) Sociometry , vol.20 , Issue.3 , pp. 205-215
    • Harary, F.1    Ross, I.C.2
  • 20
    • 0001460568 scopus 로고
    • Cliques of a graph: Variations on the Bron-Kerbosch algorithm
    • Johnston H.C. Cliques of a graph: Variations on the Bron-Kerbosch algorithm. International Journal of Parallel Programming 5 3 (1976) 209-238
    • (1976) International Journal of Parallel Programming , vol.5 , Issue.3 , pp. 209-238
    • Johnston, H.C.1
  • 22
    • 0034909407 scopus 로고    scopus 로고
    • Fundamental study: Enumerating all connected maximal common subgraphs in two graphs
    • Koch I. Fundamental study: Enumerating all connected maximal common subgraphs in two graphs. Theoretical Computer Science 250 1-2 (2001) 1-30
    • (2001) Theoretical Computer Science , vol.250 , Issue.1-2 , pp. 1-30
    • Koch, I.1
  • 23
    • 0036137278 scopus 로고    scopus 로고
    • Visualizing plant metabolomic correlation networks using cliquemetabolite matrices
    • Kose F., Weckwerth W., Linke T., and Fiehn O. Visualizing plant metabolomic correlation networks using cliquemetabolite matrices. Bioinformatics 17 12 (2001) 1198-1208
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1198-1208
    • Kose, F.1    Weckwerth, W.2    Linke, T.3    Fiehn, O.4
  • 25
    • 0000203994 scopus 로고
    • Generating all maximal independent sets: NP-hardness and polynomial-time algorithms
    • Lawler E.L., Lenstra J.K., and Kan A.H.G.R. Generating all maximal independent sets: NP-hardness and polynomial-time algorithms. SIAM Journal on Computing 9 3 (1980) 558-565
    • (1980) SIAM Journal on Computing , vol.9 , Issue.3 , pp. 558-565
    • Lawler, E.L.1    Lenstra, J.K.2    Kan, A.H.G.R.3
  • 26
    • 0020564766 scopus 로고
    • A new backtracking algorithm for generating the family of maximal independent sets of a graph
    • Loukakis E. A new backtracking algorithm for generating the family of maximal independent sets of a graph. Computers & Mathematics with Applications 9 4 (1983) 583-589
    • (1983) Computers & Mathematics with Applications , vol.9 , Issue.4 , pp. 583-589
    • Loukakis, E.1
  • 27
    • 0019709096 scopus 로고
    • A depth first search algorithm to generate the family of maximal independent sets of a graph lexicographically
    • Loukakis E., and Tsouros C. A depth first search algorithm to generate the family of maximal independent sets of a graph lexicographically. Computing 27 4 (1981) 349-366
    • (1981) Computing , vol.27 , Issue.4 , pp. 349-366
    • Loukakis, E.1    Tsouros, C.2
  • 29
    • 0004802076 scopus 로고
    • Derivation of maximal compatibles using boolean algebra
    • Marcus M.P. Derivation of maximal compatibles using boolean algebra. IBM Journal of Research and Development 8 5 (1964) 537-538
    • (1964) IBM Journal of Research and Development , vol.8 , Issue.5 , pp. 537-538
    • Marcus, M.P.1
  • 31
    • 0015330929 scopus 로고
    • Corrections to Bierstone's algorithm for generating cliques
    • Mulligan G.D., and Corneil D.G. Corrections to Bierstone's algorithm for generating cliques. Journal of the ACM 19 2 (1972) 244-247
    • (1972) Journal of the ACM , vol.19 , Issue.2 , pp. 244-247
    • Mulligan, G.D.1    Corneil, D.G.2
  • 33
    • 36049039788 scopus 로고    scopus 로고
    • Data-driven data-intensive computing for modelling and analysis of biological networks: Application to bioethanol production
    • Park B.-H., Samatova N.F., Karpinets T., Jallouk A., Molony S., Horton S., and Arcangeli S. Data-driven data-intensive computing for modelling and analysis of biological networks: Application to bioethanol production. J. Phys.: Conf. Ser. 78 (2007) 012061
    • (2007) J. Phys.: Conf. Ser. , vol.78 , pp. 012061
    • Park, B.-H.1    Samatova, N.F.2    Karpinets, T.3    Jallouk, A.4    Molony, S.5    Horton, S.6    Arcangeli, S.7
  • 34
    • 0004802505 scopus 로고
    • Minimizing the number of states in incompletely specified sequential switching functions
    • Paull M.C., and Unger S. Minimizing the number of states in incompletely specified sequential switching functions. IRE Transactions on Electronic Computers 8 (1959) 356-367
    • (1959) IRE Transactions on Electronic Computers , vol.8 , pp. 356-367
    • Paull, M.C.1    Unger, S.2
  • 35
    • 33846675685 scopus 로고    scopus 로고
    • Similarities and differences of gene expression in yeast stress conditions
    • Rokhlenko O., Wexler Y., and Yakhini Z. Similarities and differences of gene expression in yeast stress conditions. Bioinformatics 23 2 (2007) e184-e190
    • (2007) Bioinformatics , vol.23 , Issue.2
    • Rokhlenko, O.1    Wexler, Y.2    Yakhini, Z.3
  • 38
    • 33749264452 scopus 로고    scopus 로고
    • The worst-case time complexity for generating all maximal cliques and computational experiments
    • Tomita E., Tanaka A., and Takahashi H. The worst-case time complexity for generating all maximal cliques and computational experiments. Theoretical Computer Science 363 1 (2006) 28-42
    • (2006) Theoretical Computer Science , vol.363 , Issue.1 , pp. 28-42
    • Tomita, E.1    Tanaka, A.2    Takahashi, H.3
  • 41
    • 41349108025 scopus 로고    scopus 로고
    • From pull-down data to protein interaction networks and complexes with biological relevance
    • Zhang B., Park B.-H., Karpinets T., and Samatova N.F. From pull-down data to protein interaction networks and complexes with biological relevance. Bioinformatics 24 7 (2008) 979-986
    • (2008) Bioinformatics , vol.24 , Issue.7 , pp. 979-986
    • Zhang, B.1    Park, B.-H.2    Karpinets, T.3    Samatova, N.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.