De novo sulfur SAD phasing of the lysosomal 66.3 kDa protein from mouse

Acta Crystallographica Section D: Biological Crystallography

Volumn 65, Issue 3, 2009, Pages 220-228

  Lakomek, Kristina ^a   Dickmanns, Achim ^a   Mueller, Uwe ^b   Kollmann, Katrin ^a   Deuschl, Florian ^a   Berndt, Annette ^a   Lübke, Torben ^a   Ficner, Ralf ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b HAHN MEITNER INSTITUT   (Germany)

Author keywords

De novo sulfur SAD phasing; Lysosomal 66.3 kDa protein

Indexed keywords

GLYCOPROTEIN; MANNOSE 6 PHOSPHATE; MANNOSE PHOSPHATE; MANNOSE-6-PHOSPHATE; SULFUR; XENON;

ANIMAL; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; ENZYMOLOGY; GLYCOSYLATION; LYSOSOME; METHODOLOGY; MOUSE; PROTEIN CONFORMATION; PROTEIN PROCESSING; RADIATION SCATTERING; STATISTICS; X RAY CRYSTALLOGRAPHY;

ANIMALS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; GLYCOPROTEINS; GLYCOSYLATION; LYSOSOMES; MANNOSEPHOSPHATES; MICE; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN PROCESSING, POST-TRANSLATIONAL; SCATTERING, RADIATION; SULFUR; XENON;

EID: 61349107111     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444908041814     Document Type: Article

References (52)

1. Abrahams, J. P. & Leslie, A. G. W. (1996). Acta Cryst. D52, 30-42.
2. Brown, J., Esnouf, R. M., Jones, M. A., Linnell, J., Harlos, K., Hassan, A. B. & Jones, E. Y. (2002). EMBO J. 21, 1054-1062.
3. Capasso, R., Izzo, A. A., Fezza, F., Pinto, A., Capasso, F., Mascolo, N. & Di Marzo, V. (2001). Br. J. Pharmacol. 134, 945-950.
4. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
5. Cravatt, B. F., Demarest, K., Patricelli, M. P., Bracey, M. H., Giang, D. K., Martin, B. R. & Lichtman, A. H. (2001). Proc. Natl Acad. Sci. USA, 98, 9371-9376.
6. Dauter, Z., Dauter, M., de La Fortelle, E., Bricogne, G. & Sheldrick, G. M. (1999). J. Mol. Biol. 289, 83-92.
7. Debreczeni, J. É., Bunkóczi, G., Girmann, B. & Sheldrick, G. M. (2003). Acta Cryst. D59, 393-395.
8. Debreczeni, J. É., Bunkóczi, G., Ma, Q., Blaser, H. & Sheldrick, G. M. (2003). Acta Cryst. D59, 688-696.
9. Debreczeni, J. É., Girmann, B., Zeeck, A., Krätzner, R. & Sheldrick, G. M. (2003). Acta Cryst. D59, 2125-2132.
10. Deuschl, F., Kollmann, K., von Figura, K. & Lubke, T. (2006). FEBS Lett. 580, 5747-5752.
11. Djinović Carugo, K., Helliwell, J. R., Stuhrmann, H. & Weiss, M. S. (2005). J. Synchrotron Rad. 12, 410-419.
12. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
13. Fehrenbacher, N. & Jaattela, M. (2005). Cancer Res. 65, 2993-2995.
14. Feulner, J. A., Lu, M., Shelton, J. M., Zhang, M., Richardson, J. A. & Munford, R. S. (2004). Infect. Immun. 72, 3171-3178.
15. Garcia, M., Platet, N., Liaudet, E., Laurent, V., Derocq, D., Brouillet, J. P. & Rochefort, H. (1996). Stem Cells, 14, 642-650.
16. Gordon, E. J., Leonard, G. A., McSweeney, S. & Zagalsky, P. F. (2001). Acta Cryst. D57, 1230-1237.
17. Hansen, H. S., Moesgaard, B., Hansen, H. H. & Petersen, G. (2000). Chem. Phys. Lipids, 108, 135-150.
18. Hasilik, A. (1992). Experimentia, 48, 130-151.
19. Hendrickson, W. A. & Teeter, M. M. (1981). Nature (London), 290, 107-113.
20. Izzo, A. A., Fezza, F., Capasso, R., Bisogno, T., Pinto, L., Iuvone, T., Esposito, G., Mascolo, N., Di Marzo, V. & Capasso, F. (2001). Br. J. Pharmacol. 134, 563-570.
21. Jensen, A. G., Chemali, M., Chapel, A., Kieffer-Jaquinod, S., Jadot, M., Garin, J. & Journet, A. (2007). Biochem. J. 402, 449-458.
22. Kitago, Y., Watanabe, N. & Tanaka, I. (2005). Acta Cryst. D61, 1013-1021.
23. Kleywegt, G. J. & Jones, T. A. (1996). Acta Cryst. D52, 826-828.
24. Kollmann, K., Mutenda, K. E., Balleininger, M., Eckermann, E., von Figura, K., Schmidt, B. & Lubke, T. (2005). Proteomics, 5, 3966-3978.
25. Kos, J. & Lah, T. T. (1998). Oncol. Rep. 5, 1349-1361.
26. La Fortelle, E. de & Bricogne, G. (1997). Methods Enzymol. 276, 472-494.
27. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
28. Liu, Z.-J., Vysotski, E. S., Chen, C.-J., Rose, J. P., Lee, J. & Wang, B.-C. (2000). Protein Sci. 9, 2085-2093.
29. Lübke, T., Lobel, P. & Sleat, D. E. (2008). Biochim. Biophys. Acta, doi:10.1016/j.bbamcr.2008.09.018.
30. Mueller-Dieckmann, C., Panjikar, S., Schmidt, A., Mueller, S., Kuper, J., Geerlof, A., Wilmanns, M., Singh, R. K., Tucker, P. A. & Weiss, M. S. (2007). Acta Cryst. D63, 366-380.
31. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
32. Nixon, R. A. & Cataldo, A. M. (2006). J. Alzheimers Dis. 9, 277-289.
33. Panjikar, S., Parthasarathy, V., Lamzin, V. S., Weiss, M. S. & Tucker, P. A. (2005). Acta Cryst. D61, 449-457.
34. Perrakis, A., Morris, R. & Lamzin, V. S. (1999). Nature Struct. Biol. 6, 458-463.
35. Potterton, L., McNicholas, S., Krissinel, E., Gruber, J., Cowtan, K., Emsley, P., Murshudov, G. N., Cohen, S., Perrakis, A. & Noble, M. (2004). Acta Cryst. D60, 2288-2294.
36. Ramagopal, U. A., Dauter, M. & Dauter, Z. (2003). Acta Cryst. D59, 1020-1027.
37. Roeser, D., Dickmanns, A., Gasow, K. & Rudolph, M. G. (2005). Acta Cryst. D61, 1057-1066.
38. Saftig, P., Hetman, M., Schmahl, W., Weber, K., Heine, L., Mossmann, H., Koster, A., Hess, B., Evers, M., von Figura, K. & Peters, C. (1995). EMBO J. 14, 3599-3608.
39. Scriver, C. R., Sly, W. S, Childs, B., Beaudet, A. L., Kinzler, K. W. & Vogelstein, B. (2001). Editors. The Metabolic and Molecular Bases of Inherited Disease, 8th ed. New York: McGraw-Hill.
40. Sekar, K., Rajakannan, V., Velmurugan, D., Yamane, T., Thirumurugan, R., Dauter, M. & Dauter, Z. (2004). Acta Cryst. D60, 1586-1590.
41. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
42. Sleat, D. E., Della Valle, M. C., Zheng, H., Moore, D. F. & Lobel, P. (2008). J. Proteome Res. 7, 3010-3021.
43. Sleat, D. E., Jadot, M. & Lobel, P. (2007). Proteomics Clin. Appl. 1, 1134-1146.
44. Sleat, D. E., Wang, Y., Sohar, I., Lackland, H., Li, Y., Li, H., Zheng, H. & Lobel, P. (2006). Mol. Cell. Proteomics, 5, 1942-1956.
45. Sleat, D. E., Zheng, H., Qian, M. & Lobel, P. (2006). Mol. Cell. Proteomics, 5, 686-701.
46. Wang, B.-C. (1985). Methods Enzymol. 115, 90-112.
47. Watanabe, N. (2006). Acta Cryst. D62, 891-896.
48. Watanabe, N., Kitago, Y., Tanaka, I., Wang, J., Gu, Y., Zheng, C. & Fan, H. (2005). Acta Cryst. D61, 1533-1540.
49. Weiss, M. S. (2001). J. Appl. Cryst. 34, 130-135.
50. Weiss, M. S., Mander, G., Hedderich, R., Diederichs, K., Ermler, U. & Warkentin, E. (2004). Acta Cryst. D60, 686-695.
51. Weiss, M. S., Sicker, T., Djinovic-Carugo, K. & Hilgenfeld, R. (2001). Acta Cryst. D57, 689-695.
52. Yang, C. & Pflugrath, J. W. (2001). Acta Cryst. D57, 1480-1490.