Diversity of genome research at the 2009 Plant and Animal Genome Conference

Functional and Integrative Genomics

Volumn 9, Issue 1, 2009, Pages 1-6

  Appels, R ^a  

^a MURDOCH UNIVERSITY   (Australia)

Author keywords

Application; Genome research; Integration; Technology

Indexed keywords

DNA; RNA;

ANIMAL GENETICS; ARABIDOPSIS; CARROT; COTTON; DISEASE RESISTANCE; DROSOPHILA; EDITORIAL; GENE ASSIGNMENT; GENE DUPLICATION; GENE EXPRESSION; GENE IDENTIFICATION; GENE TECHNOLOGY; GENETIC DATABASE; GENETIC MODEL; GENETIC SCREENING; GENETIC SIMILARITY; GENETIC VARIABILITY; GENOME ANALYSIS; HAPLOTYPE; MEDICAL RESEARCH; NONHUMAN; PHENOTYPE; PHYLOGENY; PLANT GENETICS; PRIORITY JOURNAL; PROTEIN PROCESSING; PROTEOMICS; PUBLICATION; SINGLE NUCLEOTIDE POLYMORPHISM; SYSTEMS BIOLOGY; VALIDATION PROCESS; WHEAT;

ANIMALS; ARABIDOPSIS; DROSOPHILA; GENETIC TECHNIQUES; GENOME; GENOME, PLANT; RESEARCH;

ANIMALIA;

EID: 61349100806     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-009-0112-4     Document Type: Editorial

References (30)

1. Bailey RC, Kwong GA, Radu GG, Witte ON, Heath JR (2007) DNA-encoded antibody libraries: A unified platform for multiplexed cell sorting and detection of genes and proteins. J Am Chem Soc 129:1959-1967
2. Bottley A, Koebner RM (2008) Variation for homoeologous gene silencing in hexaploid wheat. Plant J 56:297-302
3. Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D, Whitelaw C, Kilian A, Han F, Sun Y, Gill K, Steffenson B, Kleinhofs A (2008) The stem rust resistance gene Rpg5 encodes a protein with nucleotide-binding-site, leucine-rich, and protein kinase domains. Proc Natl Acad Sci 105:14970-14975
4. Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Steven P, Briggs SP (2008) Discovery and revision of Arabidopsis genes by proteogenomics. Proc Natl Acad Sci 105:21034-21038
5. Cordell D (2008) The story of phosphorus: Missing global governance of a critical resource. SENSE Earth Systems Governance, Amsterdam, 24th-31st August
6. Costantino N, Court DL (2003) Enhanced levels of λ red-mediated recombinants in mismatch repair mutants. Proc Natl Acad Sci 100:15748-15753
7. ENCODE Consortium (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447:799-816
8. Finnie C, Bagge M, Steenholdt T, Østergaard O, Bak-Jensen KS, Backes G, Jensen A, Giese H, Larsen J, Roepstorff P, Svensson B (2008) Integration of the barley genetic and seed proteome maps for chromosome 1H, 2H, 3H, 5H and 7H. Funct Integr Genomics. doi: 10.1007/ s10142-008-0101-z
9. Forster AC, Church GM (2007) Synthetic biology projects in vitro. Genome Res 17:1-6
10. Goodsell DS (2006) The molecular perspective: C-Abl tyrosine kinase. Stem Cells 24:209-210
11. Gupta N, Benhamida J, Bhargava V, Goodman D, Kain E, Kerman I, Nguyen N, Ollikainen N, Rodriguez J, Wang J, Lipton MS, Romine M, Bafna V, Smith RD, Pevzner PA (2008). Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes. Genome Res 18:1133-1142
12. Hood L (2008) A personal journey of discovery: Developing technology and changing biology. Ann Rev Anal Chem 1:1-43
13. Hunter PJ (2007) The IUPS physiome project: A framework for multi-scale computational physiology. In: Plant & Animal Genome (PAG) XV Conference
14. Hunter PJ, Borg TK (2003) Integration from proteins to organs: The physiome project. Nat Rev Mol Cell Biol 4:237-243
15. Kiel JAKW, van den Berg MA, Fusetti F, Poolman B, Bovenberg RAL, Veenhuis M, van der Klei IJ (2009) Matching the proteome to the genome: the microbody of penicillin-producing Penicillium chrysogenum cells. Funct Integr Genomics 9: Doi: 10.1007/S10142-009-0110-6
16. Kolb HC, Sharpless KB (2003) The growing impact of click chemistry on drug discovery. Drug Discov Today 8:1128-1137
17. Lee IY, Westaway D, Smit AFA, Wang K, Seto J, Chen L, Acharya C, Ankener M, Baskin D, Cooper C, Yao H, Prusiner SB, Hood L (1998) Complete genomic sequence and analysis of the prion protein gene region from three mammalian species. Genome Res 8:1022-1037
18. Mochida K, Yamazaki Y, Ogihara Y (2003) Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags. Mol Gen Genomics 270:371-377
19. Moore RC, Xiang F, Monaghan J, Han D, Zhang Z, Edstrom L, Anvret M, Prusiner SB (2001) Huntington disease phenocopy is a familial prion disease. Am J Hum Genet 69:1385-1388
20. Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, Leroy P, Korol A, Michalak M, Kianian S, Spielmeyer W, Lagudah E, Somers D, Kilian A, Alaux M, Vautrin S, Bergès H, Eversole K, Appels R, Safar J, Simkova H, Dolezel J, Bernard M, Feuillet C (2008) A physical map of the 1-gigabase bread wheat chromosome 3B. Science 322:101-104
21. Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel J, Paterson A (2007) Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics 176:2577-2588
22. Sackton TB, Lazzaro BP, Schlenke TA, Evans JD, Hultmark D, Clark AG (2008) Dynamic evolution of the innate immune system in Drosophila. Nat Genet 39:1461-1468
23. Shaaltiel Y, Bartfeld D, Hashmueli S, Baum G, Brill-Almon E, Galili G, Dym O, Boldin-Adamsky SA, Silman I, Sussman JL, Futerman AH, Aviezer D (2007) Production of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system. Plant Biotechnol J 5:579-590
24. Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Kang K, Mitra RD, Church GM (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309:1728-1732
25. Singh RP, Hodson DP, Jin Y, Huerta-Espino J, Kinyua MG, Wanyera R, Njau P, Ward R (2006) Current status, likely migration and strategies to mitigate the threat to wheat production from race Ug99 (TTKS) of stem rust pathogen. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 2006 1, No. 054: 1-13
26. Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J, Harvard FlyBase curators, Berkeley Drosophila Genome Project, Hodges E, Hinrichs AS, Caspi A, Paten B, Park S-W, Han MV, Maeder ML, Polansky BJ, Robson BE, Aerts S, van Helden J, Hassan B, Gilbert DG, Eastmann DA, Rice M, Weir M, Hahn MW, Park Y, Dewey CN, Pachter L, Kent WL, Haussler D, Lai E, Bartel DP, Hannon GJ, Kaufman TC, Eisen MB, Clark AG, Smith D, Celkiner SE, Gelbart WM, Kellis M (2007) Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 450:219-232
27. Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs SP, Vineet Bafna V (2007) Improving gene annotation using peptide mass spectrometry. Genome Res 17:231-239
28. Udall JA, Flagel LE, Cheung F, Woodward AW, Hovav R, Rapp RA, Swanson JM, Lee JJ, Gingle AR, Nettleton D, Town C, Chen ZJ, Wendel JF (2007) Spotted cotton oligonucleotide microarrays for gene expression analysis. BMC Genomics 8:81-89
29. Zerbino DR, Birney E (2008) Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821-829
30. Zhang J, Huang S, Fosu-Nyarko J, Dell B, McNeil M, Waters I, Moolhuijzen P, Conocono E, Appels R (2008) The genome structure of the 1-FEH genes in wheat (Triticum aestivum L): New markers to track stem carbohydrates and grain filling QTLs in breeding. Mol Breeding 22:339-351