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Volumn 157, Issue 1, 2009, Pages 55-61

Purification of DNA from the cell-associated herpesvirus Marek's disease virus for 454 pyrosequencing using micrococcal nuclease digestion and polyethylene glycol precipitation

Author keywords

454 pyrosequencing; Cell associated virus; DNA isolation; Gallid herpesvirus type 2; Marek's disease; Polyethylene glycol precipitation

Indexed keywords

ADENOSINE TRIPHOSPHATE DEPENDENT PROTEINASE; ATP DEPENDENT EXONUCLEASE; DNA POLYMERASE; EXONUCLEASE; MACROGOL; MICROCOCCAL NUCLEASE; UNCLASSIFIED DRUG; VIRUS DNA;

EID: 60849121703     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2008.11.017     Document Type: Article
Times cited : (30)

References (31)
  • 2
    • 0026735647 scopus 로고
    • An improved method for rapid purification of covalently closed circular plasmid DNA over a wide size range
    • Azad A.K., Coote J.G., and Parton R. An improved method for rapid purification of covalently closed circular plasmid DNA over a wide size range. Lett. Appl. Microbiol. 14 (1992) 250-254
    • (1992) Lett. Appl. Microbiol. , vol.14 , pp. 250-254
    • Azad, A.K.1    Coote, J.G.2    Parton, R.3
  • 3
    • 0142010992 scopus 로고    scopus 로고
    • Novel applications of feather tip extracts from MDV-infected chickens; diagnosis of commercial broilers, whole genome separation by PFGE and synchronic mucosal infection
    • Davidson I., and Borenshtain R. Novel applications of feather tip extracts from MDV-infected chickens; diagnosis of commercial broilers, whole genome separation by PFGE and synchronic mucosal infection. FEMS Immunol. Med. Microbiol. 38 (2003) 199-203
    • (2003) FEMS Immunol. Med. Microbiol. , vol.38 , pp. 199-203
    • Davidson, I.1    Borenshtain, R.2
  • 4
    • 0021745709 scopus 로고
    • Application of "Hirt supernatant" DNA to the molecular epidemiology of cytomegalovirus infections
    • Eizuru Y., Inagawa S., and Minamishima Y. Application of "Hirt supernatant" DNA to the molecular epidemiology of cytomegalovirus infections. J. Clin. Microbiol. 20 (1984) 1012-1014
    • (1984) J. Clin. Microbiol. , vol.20 , pp. 1012-1014
    • Eizuru, Y.1    Inagawa, S.2    Minamishima, Y.3
  • 7
    • 0035170396 scopus 로고    scopus 로고
    • Differential attenuation of the induction by Marek's disease virus of transient paralysis and persistent neurological disease: a model for pathogenesis studies
    • Gimeno I., Witter R., Hunt H.D., Reddy S., and Neumann U. Differential attenuation of the induction by Marek's disease virus of transient paralysis and persistent neurological disease: a model for pathogenesis studies. Avian Pathol. 30 (2001) 397-409
    • (2001) Avian Pathol. , vol.30 , pp. 397-409
    • Gimeno, I.1    Witter, R.2    Hunt, H.D.3    Reddy, S.4    Neumann, U.5
  • 8
    • 4243586648 scopus 로고    scopus 로고
    • Nuclei isolation by Dounce homogenizer
    • Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Stuchl K. (Eds), John Wiley & Sons, New York pp. 4.10-4.10.8
    • Greenberg M.E., and Bender T.P. Nuclei isolation by Dounce homogenizer. In: Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Stuchl K. (Eds). Current Protocols in Molecular Biology (1997), John Wiley & Sons, New York pp. 4.10-4.10.8
    • (1997) Current Protocols in Molecular Biology
    • Greenberg, M.E.1    Bender, T.P.2
  • 9
    • 0016746537 scopus 로고
    • Anatomy of herpes simplex virus DNA: strain differences and heterogeneity in the locations of restriction endonuclease cleavage sites
    • Hayward G.S., Frenkel N., and Roizman B. Anatomy of herpes simplex virus DNA: strain differences and heterogeneity in the locations of restriction endonuclease cleavage sites. Proc. Natl. Acad. Sci. U.S.A. 72 (1975) 1768-1772
    • (1975) Proc. Natl. Acad. Sci. U.S.A. , vol.72 , pp. 1768-1772
    • Hayward, G.S.1    Frenkel, N.2    Roizman, B.3
  • 10
    • 0014202537 scopus 로고
    • Selective extraction of polyoma DNA from infected mouse cell cultures
    • Hirt B. Selective extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 26 (1967) 365-369
    • (1967) J. Mol. Biol. , vol.26 , pp. 365-369
    • Hirt, B.1
  • 12
    • 0025249168 scopus 로고
    • Purification of genomic sized herpesvirus DNA using pulse-field electrophoresis
    • Isfort R.J., Robinson D., and Kung H.J. Purification of genomic sized herpesvirus DNA using pulse-field electrophoresis. J. Virol. Methods 27 (1990) 311-317
    • (1990) J. Virol. Methods , vol.27 , pp. 311-317
    • Isfort, R.J.1    Robinson, D.2    Kung, H.J.3
  • 13
    • 2442666294 scopus 로고    scopus 로고
    • Differential amplification and quantitation of Marek's disease viruses using real-time polymerase chain reaction
    • Islam A., Harrison B., Cheetham B.F., Mahony T.J., Young P.L., and Walkden-Brown S.W. Differential amplification and quantitation of Marek's disease viruses using real-time polymerase chain reaction. J. Virol. Methods 119 (2004) 103-113
    • (2004) J. Virol. Methods , vol.119 , pp. 103-113
    • Islam, A.1    Harrison, B.2    Cheetham, B.F.3    Mahony, T.J.4    Young, P.L.5    Walkden-Brown, S.W.6
  • 14
    • 0018880543 scopus 로고
    • Fractionation of DNA fragments by polyethylene glycol induced precipitation
    • Lis J.T. Fractionation of DNA fragments by polyethylene glycol induced precipitation. Methods Enzymol. 65 (1980) 347-353
    • (1980) Methods Enzymol. , vol.65 , pp. 347-353
    • Lis, J.T.1
  • 15
    • 0016591521 scopus 로고
    • Size fractionation of double-stranded DNA by precipitation with polyethylene glycol
    • Lis J.T., and Schleif R. Size fractionation of double-stranded DNA by precipitation with polyethylene glycol. Nucleic Acids Res. 2 (1975) 383-389
    • (1975) Nucleic Acids Res. , vol.2 , pp. 383-389
    • Lis, J.T.1    Schleif, R.2
  • 17
    • 0022521909 scopus 로고
    • Chromosomal organization of the herpes simplex virus genome during acute infection of the mouse central nervous system
    • Muggeridge M.I., and Fraser N.W. Chromosomal organization of the herpes simplex virus genome during acute infection of the mouse central nervous system. J. Virol. 59 (1986) 764-767
    • (1986) J. Virol. , vol.59 , pp. 764-767
    • Muggeridge, M.I.1    Fraser, N.W.2
  • 19
    • 0026101630 scopus 로고
    • Precipitation of DNA by polyethylene glycol and ethanol
    • Paithankar K.R., and Prasad K.S. Precipitation of DNA by polyethylene glycol and ethanol. Nucleic Acids Res. 19 (1991) 1346
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1346
    • Paithankar, K.R.1    Prasad, K.S.2
  • 20
    • 0017054144 scopus 로고
    • Isolation of herpes simplex virus DNA from the "hirt supernatant"
    • Pater M.M., Hyman R.W., and Rapp F. Isolation of herpes simplex virus DNA from the "hirt supernatant". Virology 75 (1976) 481-483
    • (1976) Virology , vol.75 , pp. 481-483
    • Pater, M.M.1    Hyman, R.W.2    Rapp, F.3
  • 21
    • 33748929353 scopus 로고    scopus 로고
    • A full-genome phylogenetic analysis of varicella-zoster virus reveals a novel origin of replication-based genotyping scheme and evidence of recombination between major circulating clades
    • Peters G.A., Tyler S.D., Grose C., Severini A., Gray M.J., Upton C., and Tipples G.A. A full-genome phylogenetic analysis of varicella-zoster virus reveals a novel origin of replication-based genotyping scheme and evidence of recombination between major circulating clades. J. Virol. 80 (2006) 9850-9860
    • (2006) J. Virol. , vol.80 , pp. 9850-9860
    • Peters, G.A.1    Tyler, S.D.2    Grose, C.3    Severini, A.4    Gray, M.J.5    Upton, C.6    Tipples, G.A.7
  • 22
    • 0018408296 scopus 로고
    • Herpes simplex virus DNA isolation from infected cells with a novel procedure
    • Pignatti P.F., Cassai E., Meneguzzi G., Chenciner N., and Milanesi G. Herpes simplex virus DNA isolation from infected cells with a novel procedure. Virology 93 (1979) 260-264
    • (1979) Virology , vol.93 , pp. 260-264
    • Pignatti, P.F.1    Cassai, E.2    Meneguzzi, G.3    Chenciner, N.4    Milanesi, G.5
  • 23
    • 2342580669 scopus 로고    scopus 로고
    • Purification of BAC DNA
    • Zhao S., and Stodolsky M. (Eds), Humana Press, Totowa, NJ
    • Poulsen T. Purification of BAC DNA. In: Zhao S., and Stodolsky M. (Eds). Methods in Molecular Biology-Bacterial Artificial Chromosomes vol. 225 (2004), Humana Press, Totowa, NJ 91-100
    • (2004) Methods in Molecular Biology-Bacterial Artificial Chromosomes , vol.225 , pp. 91-100
    • Poulsen, T.1
  • 25
    • 33745188883 scopus 로고    scopus 로고
    • Purification of nucleic acids by selective precipitation with polyethylene glycol 6000
    • Schmitz A., and Riesner D. Purification of nucleic acids by selective precipitation with polyethylene glycol 6000. Anal. Biochem. 354 (2006) 311-313
    • (2006) Anal. Biochem. , vol.354 , pp. 311-313
    • Schmitz, A.1    Riesner, D.2
  • 26
    • 0032772621 scopus 로고    scopus 로고
    • A simple and rapid method for preparation of viral DNA from cell associated cytomegalovirus
    • Sinzger C., Knapp J., Schmidt K., Kahl M., and Jahn G. A simple and rapid method for preparation of viral DNA from cell associated cytomegalovirus. J. Virol. Methods 81 (1999) 115-122
    • (1999) J. Virol. Methods , vol.81 , pp. 115-122
    • Sinzger, C.1    Knapp, J.2    Schmidt, K.3    Kahl, M.4    Jahn, G.5
  • 27
    • 43049142939 scopus 로고    scopus 로고
    • Sequence determination of a mildly virulent strain (CU-2) of Gallid herpesvirus type 2 using 454 pyrosequencing
    • Spatz S.J., and Rue C.A. Sequence determination of a mildly virulent strain (CU-2) of Gallid herpesvirus type 2 using 454 pyrosequencing. Virus Genes 36 (2008) 478-489
    • (2008) Virus Genes , vol.36 , pp. 478-489
    • Spatz, S.J.1    Rue, C.A.2
  • 28
    • 2742542982 scopus 로고
    • DNase I sensitivity of transcriptionally active genes in intact nuclei and isolated chromatin of plants
    • Spiker S., Murray M.G., and Thompson W.F. DNase I sensitivity of transcriptionally active genes in intact nuclei and isolated chromatin of plants. Proc. Natl. Acad. Sci. U.S.A. 80 (1983) 815-819
    • (1983) Proc. Natl. Acad. Sci. U.S.A. , vol.80 , pp. 815-819
    • Spiker, S.1    Murray, M.G.2    Thompson, W.F.3
  • 29
    • 0036932989 scopus 로고    scopus 로고
    • Stability and circularization of herpes simplex virus type 1 genomes in quiescently infected PC12 cultures
    • Su Y.H., Moxley M.J., Ng A.K., Lin J., Jordan R., Fraser N.W., and Block T.M. Stability and circularization of herpes simplex virus type 1 genomes in quiescently infected PC12 cultures. J. Gen. Virol. 83 (2002) 2943-2950
    • (2002) J. Gen. Virol. , vol.83 , pp. 2943-2950
    • Su, Y.H.1    Moxley, M.J.2    Ng, A.K.3    Lin, J.4    Jordan, R.5    Fraser, N.W.6    Block, T.M.7
  • 30
    • 0017144759 scopus 로고
    • A new method for the isolation of herpes simplex virus type 2 DNA
    • Walboomers J.M., and Schegget J.T. A new method for the isolation of herpes simplex virus type 2 DNA. Virology 74 (1976) 256-258
    • (1976) Virology , vol.74 , pp. 256-258
    • Walboomers, J.M.1    Schegget, J.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.