Fine-scale population genetic structure of zhikong scallop (chlamys farreri): Do local marine currents drive geographical differentiation?

Marine Biotechnology

Volumn 11, Issue 2, 2009, Pages 223-235

  Zhan, Aibin ^a   Hu, Jingjie ^a   Hu, Xiaoli ^a   Zhou, Zunchun ^b   Hui, Min ^a   Wang, Shi ^a   Peng, Wei ^a   Wang, Mingling ^a   Bao, Zhenmin ^a  

^a OCEAN UNIVERSITY OF CHINA   (China)

^b LIAONING OCEAN AND FISHERIES SCIENCE RESEARCH INSTITUTE   (China)

Author keywords

Geographical differentiation; Landscape genetics; Marine gyre; Microsatellite DNA; Population structure; Zhikong scallop Chlamys farreri

Indexed keywords

GEOGRAPHICAL DIFFERENTIATION; LANDSCAPE GENETICS; MARINE GYRE; MICROSATELLITE DNA; POPULATION STRUCTURE; ZHIKONG SCALLOP CHLAMYS FARRERI;

COOLING WATER; GENES; NUCLEIC ACIDS; SEAWATER; SETTLING TANKS;

DNA;

MICROSATELLITE DNA;

BIVALVE; DEVELOPMENTAL STAGE; DNA; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; GENETIC VARIATION; GEOGRAPHICAL VARIATION; GYRE; LARVA; PLANKTON; POPULATION DYNAMICS; POPULATION GENETICS; POPULATION STRUCTURE; SOFTWARE;

ANIMAL; ARTICLE; BIOLOGY; CHINA; CLUSTER ANALYSIS; GENETIC VARIABILITY; GENETICS; POPULATION GENETICS; SCALLOP; WATER FLOW;

ANIMALS; CHINA; CLUSTER ANALYSIS; GENETIC VARIATION; GENETICS, POPULATION; MARINE BIOLOGY; MICROSATELLITE REPEATS; PECTINIDAE; WATER MOVEMENTS;

BIVALVIA; CHLAMYS FARRERI; PECTINIDAE;

EID: 60849121396     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-008-9138-1     Document Type: Article

References (75)

1. HY An JY Park 2005 Ten new highly polymorphic microsatellite loci in the blood clam Scapharca broughtonii Mol Ecol Notes 5 896 898
2. S Arnaud M Monteforte N Galtier F Bonhomme F Blanc 2000 Population structure and genetic variability of pearl oyster Pinctada mazatlanica along Pacific coasts from Mexico to Panama Conserv Genet 1 299 307
3. Avise JC (2004) Molecular markers, natural history, and evolution, 2nd edn. Sinauer, Sunderland
4. M Baranski M Loughnan CM Austin N Robinson 2006 A microsatellite linkage map of the black lip abalone, Haliotis rubra Anim Genet 37 563 570
5. E Baus DJ Darrock MW Bruford 2005 Gene-flow pattern in Atlantic and Mediterranean populations of the Lusitanian sea star Asterina gibbosa Mol Ecol 14 3373 3382
6. JAH Benzie ST Williams 1992 No genetic differentiation of giant clam (Tridacna gigas) populations in the Great Barrier Reef, Australia Mar Biol 113 373 377
7. AJ Bohonak 1999 Dispersal, gene flow, and population structure Quart Rev Biol 74 21 45
8. B Brown DE Franklin PM Gaffney M Hong D Dendanto I Kornfield 2000 Characterization of microsatellite loci in the eastern oyster, Crassostrea virginica Mol Ecol 9 2217 2219
9. DF Callen AD Thompson Y Shenm HA Phillipsm RI Richards JC Mulley GR Sutherland 1993 Incidence and origin of "null" alleles in the (AC)n microsatellite markers Am J Hum Genet 52 922 927
10. R Collin 2001 The effects of mode of development on phylogeography and population structure of North Atlantic crepidula (Gasteropoda: Calyptraeidae) Mol Ecol 10 2249 2262
11. S Edmands DC Potts 1997 Population genetic structure in brooding sea anemones (Epiactis spp.) with contrasting reproductive modes Mar Biol 127 485 498
12. A El Mousadik RJ Petit 1996 High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa (L.) Skeels) endemic to Morocco Theor Appl Genet 92 832 839
13. Felsenstein J (2000) PHYLIP version 3.6. Department of Genetics, University of Washington, Seattle
14. V Fievet P Touzet J Arnaud J Cuguen 2006 Spatial analysis of nuclear and cytoplasmic DNA diversity in wild sea beet (Beta vulgaris ssp. maritima) populations: do marine currents shape the genetic structure? Mol Ecol 16 1847 1864
15. SJ Goodman 1997 Rst Calc: a collection of computer programs for calculating estimates of genetic differentiation from microsatellite data and determining their significance Mol Ecol 6 881 885
16. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). http://www.unil.ch/izea/softwares/fstat. html
17. J Goudet M Raymond T De Meiis F Rousset 1996 Testing differentiation in diploid populations Genetics 144 933 940
18. SW Guo EA Thompson 1992 Performing the exact test of Hardy-Weinberg proportion for multiple alleles Biometrics 48 361 372
19. D Hedgecock G Li S Hubert K Bucklin V Ribes 2004 Widespread null alleles and poor cross-species amplification of microsatellite DNA loci cloned from the Pacific oyster, Crassostrea gigas J Shellfish Res 23 379 385
20. CM Herbinger BM Vercaemer B Gjetvaj R O'Dor 1998 Absence of genetic differentiation among geographically close sea scallop (Placopecten magellanicus) beds with cDNA and microsatellite markers J Shellfish Res 17 117 122
21. Hedrick PW (1999) Genetics of populations, 2nd edn. Jones and Bartlett, Sudbury, p 629
22. S Hubert D Hedgecock 2004 Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas Genetics 168 351 362
23. A Hunt 1993 Effects of contrasting patterns of larval dispersal on the genetic connectedness of local populations of two intertidal starfish, Patiriella calcar and P. exigua Mar Ecol Prog Ser 92 179 186
24. HBH Jørgensen MM Hansen D Bekkevold DE Ruzzante V Loeschcke 2005 Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea Mol Ecol 14 3219 3234
25. EL Kenchington MU Patwary E Zouros CJ Bird 2006 Genetic differentiation in relation to marine landscape in a broadcast-spawning bivalve mollusc (Placopecten magellanicus) Mol Ecol 15 1781 1796
26. CJ Kyle EG Boulding 2000 Comparative population genetic structure of marine gastropods (Littorina spp.) with and without pelagic larval dispersal Mar Biol 137 835 845
27. S Launey D Hedgecock 2001 High genetic load in the Pacific oyster Crassostrea gigas Genetics 159 255 265
28. S Launey C Ledu P Boudry F Bonhomme Y Naciri-Graven 2002 Geographic structure in the European flat oyster (Ostrea edulis L.) as revealed by microsatellite polymorphism J Hered 93 331 351
29. JS Levinton RK Koehn 1976
30. RI Lewis JP Thorpe 1994 Temporal stability of gene frequencies within genetically heterogeneous populations of queen scallop Aequipecten (Chlamys) opercularis Mar Biol 121 117 126
31. Li FH, Liu AJ (1989) Hydrological regime in the offshore regions of Shandong Peninsula. Shandong Maps Press, Shandong
32. G Li S Hubert K Bucklin V Ribes D Hedgecock 2003 Characterization of 79 microsatellite DNA markers in the Pacific oysters Crassostrea gigas Mol Ecol Notes 3 228 232
33. Q Li H Yu RH Yu 2006 Genetic variability assessed by microsatellites in cultured populations of the Pacific oyster (Crassostrea gigas) in China Aquaculture 259 95 102
34. CJ Lundy P Moran C Rico RS Milner GM Hewitt 1999 Macrogeographical population differentiation in oceanic environments: a case study of European hake (Merluccius merluccius), a commercially important fish Mol Ecol 81 889 1898
35. PC Luttikhuizen J Drent AJ Baker 2003 Disjunct distribution of highly diverged mitochondrial lineage clade and population subdivision in a marine bivalve with pelagic larval dispersal Mol Ecol 12 2215 2229
36. JM Macaranas CA Ablan MJR Pante JAH Benzie ST Williams 1992 Genetic structure of giant clam (Tridacna derasa) populations from reefs in the Indo-Pacific Mar Biol 113 231 238
37. F Manni E Guérard E Heyer 2004 Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by "Monmonier's algorithm" Hum Biol 76 173 190
38. K Nagashima M Sato K Kawamata A Nakamura T Ohta 2005 Genetic structure of Japanese scallop population in Hokkaido, analyzed by mitochondrial haplotype distribution Mar Biotechnol 7 1 10
39. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
40. EE Nielsen E Kenchington 2001 Prioritising marine fish and shellfish populations for conservation: a useful concept? Fish Fisher 2 328 343
41. AT Norris DG Bradley EP Cunningham 1999 Microsatellite genetic variation between and within farmed and wild Atlantic salmon (Salmo salar) populations Aquaculture 180 247 264
42. SR Palumbi 1992 Marine speciation on a small planet Trends Ecol Evol 7 114 118
43. SR Palumbi CS Baker 1994 Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales Mol Biol Evol 11 426 435
44. S Piry A Alapetite J-M Cornuet D Paetkau L Baudouin A Estoup 2004 geneclass2: a software for genetic assignment and first-generation migrant detection J Hered 95 536 539
45. Y Qin X Liu H Zhang G Zhang X Guo 2007 Identification and mapping of amplified fragment length polymorphism markers linked to shell color in bay scallop, Argopecten irradians irradians (Lamarck, 1819) Mar Biotechnol 9 66 73
46. M Raymond F Rousset 1995 Genepop (version 1.2): population genetic software for exact tests and ecumenicism J Hered 86 248 249
47. RW Rice 1989 Analyzing tables of statistical tests Evolution 43 223 225
48. G Ridgway 2001 Interpopulation variation in blue mussels, Mytilus edulis L., over short distances Sarsia 86 157 161
49. C Riginos MW Nachman 2001 Population subdivision in marine environments: the contribution of biogeography, geographical distance and discontinuous habitat to genetic differentiation in a blennioid fish, Axoclinus nigricaudus Mol Ecol 10 1439 1453
50. CG Rose KT Paynter MP Hare 2006 Isolation by distance in the Eastern oyster, Crassostrea virginica, in Chesapeake Bay J Hered 97 158 170
51. C Saavedra JB Peña 2005 Nucleotide diversity and Pleistocene population expansion in Atlantic and Mediterranean scallops (Pecten maximus and P. jacobaeus) as revealed by the mitochondrial 16S ribosomal RNA gene J Exp Mar Biol Ecol 323 138 150
52. Schneider S, Kueffer JM, Roessi D, Excoffier L (1997) AREQUIN version 1.1: a software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva
53. PW Show GJ Pierce PR Boyle 1999 Subtle population structuring within a highly vagile marine invertebrate, the veined squid Loligo forbesi, demonstrated with microsatellite DNA markers Mol Ecol 8 407 417
54. DOF Skibinski JA Beardmore TF Cross 1983 Aspects of the population genetics of Mytilus (Mytilidae; Mollusca) in the British Isles Biol J Linn Soc 19 137 183
55. C Smith JAH Benzie KJ Wolson 2003 Isolation and characterization of eight microsatellite loci from silver-lipped pearl oyster Pinctada maxima Mol Ecol Notes 3 125 127
56. L Song W Xu C Li H Li L Wu J Xiang X Guo 2006 Development of expressed sequence tags from the bay scallop, Argopecten irradians irradians Mar Biotechnol 8 161 169
57. D Tautz 1989 Hypervariability of simple sequences as a general source for polymorphic DNA markers Nucleic Acids Res 17 6463 6471
58. MJ Tremblay JW Loder FE Werner CE Naimie FH Page MM Sinclair 1994 Drift of sea scallop larvae Placopecten magellanicus on Georges Bank: a model study of the roles of mean advection, larval behaviour and larval origin Deep Sea Res 41 7 29
59. B Vadopalas LL Leclair P Bentzen 2004 Microsatellite and allozyme analyses reveal few genetic differences among spatially distinct aggregations of geoduck clams (Panopea abrupta, Conrad 1849) J Shellfish Res 23 693 706
60. S Wang ZM Bao LL Zhang N Li AB Zhan WB Guo JJ Wang XL Hu 2006 A new strategy for species identification of planktonic larvae: PCR-RFLP analysis of the internal transcribed spacer region of ribosomal DNA detected by agarose gel electrophoresis or DHPLC J Plankton Res 28 375 384
61. S Wang ZM Bao N Li LL Zhang JJ Hu 2007 Analysis of the secondary structure of ITS1 in Pectinidae: implications for phylogenetic reconstruction and structural evolution Mar Biotechnol 9 231 242
62. JL Weber PE May 1989 Abundant class of human DNA polymorphism which can be typed using the polymerase chain reaction Am J Hum Genet 44 388 396
63. AB Wilson K-A Naish EG Boulding 1999 Multiple dispersal strategies of the invasive quagga mussel (Dreissena bugensis) as revealed by microsatellite analysis Can J Fish Aquat Sci 56 2248 2257
64. Zhan AB (2007) Development, characterization and application of microsatellite markers in Zhikong scallop (Chlamys farreri). Doctoral Dissertation of Ocean University of China, Qingdao
65. AB Zhan ZM Bao XL Wang JJ Hu 2005 Microsatellite markers derived from bay scallop Argopecten irradians expressed sequence tags Fisheries Sci 71 1341 1346
66. AB Zhan ZM Bao B Yao XL Wang H Min JJ Hu 2006 Polymorphic microsatellite markers in the Zhikong scallop Chlamys farreri Mol Ecol Notes 6 127 129
67. AB Zhan JJ Hu XL Wang W Lu M Hui ZM Bao 2006 A panel of polymorphic EST-derived microsatellite loci for the bay scallop (Argopecten irradians) J Mollus Stud 72 436 438
68. AB Zhan ZM Bao XL Hu M Hui ML Wang W Peng HB Zhao JJ Hu 2007 Isolation and characterization of 150 novel microsatellite markers for Zhikong scallop (Chlamys farreri) Mol Ecol Notes 7 1015 1022
69. AB Zhan ZM Bao M Hui ML Wang HB Zhao W Lu XL Hu JJ Hu 2007 Inheritance pattern of EST-SSRs in self-fertilized larvae of the bay scallop Argopecten irradians Ann Zoo Fenn 44 259 268
70. AB Zhan ZM Bao XL Hu W Lu S Wang W Peng ML Wang M Hui JJ Hu 2008 Accurate methods of DNA extraction and PCR-based genotyping for single scallop embryos/larvae long preserved in ethanol Mol Ecol Resources 8 790 795
71. QQ Zhang XF Xu J Qi XL Wang ZM Bao 2004 The genetic diversity of wild and farmed Japanese flounder populations Period Ocean Univ China 34 816 820
72. LL Zhang ZM Bao J Cheng H Li XT Huang S Wang C Zhang JJ Hu 2007 Fosmid library construction and initial analysis of end sequences in Zhikong scallop (Chlamys farreri) Mar Biotechnol 9 606 612
73. LL Zhang ZM Bao S Wang XL Hu JJ Hu 2008 FISH mapping and identification of Zhikong scallop (Chlamys farreri) chromosomes Mar Biotechnol 10 151 157
74. Y Zhang X Zhang CF Scheuring HB Zhang P Huan F Li J Xiang 2008 Construction and characterization of two bacterial artificial chromosome libraries of Zhikong Scallop, Chlamys farreri Jones et Preston, and identification of BAC clones containing the genes involved in its innate immune system Mar Biotechnol 10 358 365
75. Zhou D, Liang YB, Tseng CK (1994) Oceanology of China seas. Kluwer Academic, Boston