Primary reaction dynamics of proteorhodopsin mutant D97N observed by femtosecond infrared and visible spectroscopy

Photochemistry and Photobiology

Volumn 85, Issue 2, 2009, Pages 540-546

  Verhoefen, Mirka Kristin ^a   Neumann, Karsten ^a   Weber, Ingrid ^a   Glaubitz, Clemens ^a   Wachtveitl, Josef ^a  

^a GOETHE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTIC ACID; PROTEORHODOPSIN; RHODOPSIN;

CHEMISTRY; CONFERENCE PAPER; GENETICS; METABOLISM; MUTATION; SPECTROSCOPY; TIME;

ASPARTIC ACID; MUTATION; RHODOPSIN; SPECTRUM ANALYSIS; TIME FACTORS;

EID: 60849090215     PISSN: 00318655     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1751-1097.2008.00513.x     Document Type: Conference Paper

References (31)

1. Beja, O., L. Aravind, E. V. Koonin, M. T. Suzuki, A. Hadd, L. P. Nguyen, S. Jovanovich, C. M. Gates, R. A. Feldman, J. L. Spudich, E. N. Spudich E. F. DeLong (2000) Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289, 1902 1906.
2. Beja, O., E. N. Spudich, J. L. Spudich, M. Leclerc E. F. DeLong (2001) Proteorhodopsin phototrophy in the ocean. Nature 411, 786 789.
3. Dioumaev, A. K., L. S. Brown, J. Shih, E. N. Spudich, J. L. Spudich J. K. Lanyi (2002) Proton transfers in the photochemical reaction cycle of proteorhodopsin. Biochemistry 41, 5348 5358.
4. Friedrich, T., S. Geibel, R. Kalmbach, I. Chizhov, K. Ataka, J. Heberle, M. Engelhard E. Bamberg (2002) Proteorhodopsin is a light-driven proton pump with variable vectoriality. J. Mol. Biol. 321, 821 838.
5. Lakatos, M. G. Varo (2004) The influence of water on the photochemical reaction cycle of proteorhodopsin at low and high pH. J. Photochem. Photobiol. B 73, 177 182.
6. Varo, G., L. S. Brown, M. Lakatos J. K. Lanyi (2003) Characterization of the photochemical reaction cycle of proteorhodopsin. Biophys. J. 84, 1202 1207.
7. Lakatos, M., J. K. Lanyi, J. Szakacs G. Varo (2003) The photochemical reaction cycle of proteorhodopsin at low pH. Biophys. J. 84, 3252 3256.
8. Huber, R., T. Köhler, M. O. Lenz, E. Bamberg, R. Kalmbach, M. Engelhard J. Wachtveitl (2005) pH-dependent photoisomerization of retinal in proteorhodopsin. Biochemistry 44, 1800 1806.
9. Lenz, M. O., R. Huber, B. Schmidt, P. Gilch, R. Kalmbach, M. Engelhard J. Wachtveitl (2006) First steps of retinal photoisomerization in proteorhodopsin. Biophys. J. 91, 255 262.
10. Neumann, K., M.-K. Verhoefen, I. Weber, C. Glaubitz J. Wachtveitl (2008) The initial reaction dynamics of proteorhodopsin observed by femtosecond infrared and visible spectroscopy. Biophys. J. 94, 4796 4807.
11. Lenz, M. O., A. C. Woerner, C. Glaubitz J. Wachtveitl (2007) Photoisomerization in proteorhodopsin mutant D97N. Photochem. Photobiol. 83, 226 231.
12. 2. Opt. Commun. 194, 443 448.
13. Kovalenko, S. A., A. L. Dobryakov, J. Ruthmann N. P. Ernsting (1999) Femtosecond spectroscopy of condensed phases with chirped supercontinuum probing. Phys. Rev. A 59, 2369 2384.
14. Hamm, P. (1995) Coherent effects in femtosecond infrared-spectroscopy. Chem. Phys. 200, 415 429.
15. Wynne, K. R. M. Hochstrasser (1995) The theory of ultrafast vibrational spectroscopy. Chem. Phys. 193, 211 236.
16. Ekvall, K., P. van der Meulen, C. Dhollande, L. E. Berg, S. Pommeret, R. Naskrecki J. C. Mialocq (2000) Cross phase modulation artifact in liquid phase transient absorption spectroscopy. J. Appl. Phys. 87, 2340 2352.
17. Lorenc, M., M. Ziolek, R. Naskrecki, J. Karolczak, J. Kubicki A. Maciejewski (2002) Artifacts in femtosecond transient absorption spectroscopy. Appl. Phys. B 74, 19 27.
18. Aton, B., R. H. Callender, B. Becher T. G. Ebrey (1977) Resonance Raman studies of purple membrane. Biochemistry 16, 2995 2999.
19. van den Berg, R., D. J. Jang, H. C. Bitting M. A. El-Sayed (1990) Subpicosecond resonance Raman-spectra of the early intermediates in the photocycle of bacteriorhodopsin. Biophys. J. 58, 135 141.
20. Bergo, V., J. J. Amsden, E. N. Spudich, J. L. Spudich K. J. Rothschild (2004) Structural changes in the photoactive site of proteorhodopsin during the primary photoreaction. Biochemistry 43, 9075 9083.
21. Furutani, Y., D. Ikeda, M. Shibata H. Kandori (2006) Strongly hydrogen-bonded water molecule is observed only in the alkaline form of proteorhodopsin. Chem. Phys. 324, 705 708.
22. Hamm, P., M. Zurek, T. Röschinger, H. Patzelt, D. S. Oesterhelt W. Zinth (1997) Subpicosecond infrared spectroscopy on the photoisomerisation of the protonated Schiff base of all-trans retinal. Chem. Phys. Lett. 268, 180 186.
23. Ikeda, D., Y. Furutani H. Kandori (2007) FTIR study of retinal Schiff base and internal water molecules of proteorhodopsin. Biochemistry 46, 5365 5373.
24. Amsden, J. J., J. M. Kralj, L. R. Chieffo, X. H. Wang, S. Erramilli, E. N. Spudich, J. L. Spudich, L. D. Ziegler K. J. Rothschild (2007) Subpicosecond protein backbone changes detected during the green-absorbing proteorhodopsin primary photoreaction. J. Phys. Chem. B 111, 11824 11831.
25. Hamm, P., S. M. Ohline W. Zinth (1997) Vibrational cooling after ultrafast photoisomerization of azobenzene measured by femtosecond infrared spectroscopy. J. Chem. Phys. 106, 519 529.
26. Koller, F. O., C. Sobotta, T. E. Schrader, T. Cordes, W. J. Schreier, A. Sieg P. Gilch (2007) Slower processes of the ultrafast photo-isomerization of an azobenzene observed by IR spectroscopy. Chem. Phys. 341, 258 266.
27. Abramczyk, H. (2004) Femtosecond primary events in bacteriorhodopsin and its retinal modified analogs: Revision of commonly accepted interpretation of electronic spectra of transient intermediates in the bacteriorhodopsin photocycle. J. Chem. Phys. 120, 11120 11132.
28. Schmidt, B., C. Sobotta, B. Heinz, S. Laimgruber, M. Braun P. Gilch (2005) Excited-state dynamics of bacteriorhodopsin probed by broadband femtosecond fluorescence spectroscopy. Biochim. Biophys. Acta. Bioenerg. 1706, 165 173.
29. Zhong, Q., S. Ruhman, M. Ottolenghi, M. Sheves, N. Friedman, G. H. Atkinson J. K. Delaney (1996) Reexamining the primary light-induced events in bacteriorhodopsin using a synthetic C-13=C-14-locked chromophore. J. Am. Chem. Soc. 118, 12828 12829.
30. Pfleger, N., M. Lorch, A. C. Woerner, S. Shastri C. Glaubitz (2008) Characterisation of Schiff base and chromophore in green proteorhodopsin by solid-state NMR. J. Biomol. NMR 40, 15 21.
31. Garczarek, F. K. Gerwert (2006) Functional waters in intraprotein proton transfer monitored by FTIR difference spectroscopy. Nature 439, 109 112.