-
1
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
12466850
-
Waterston RH Lindblad-Toh K Birney E Rogers J Abril JF Agarwal P Agarwala R Ainscough R Alexandersson M An P et al Initial sequencing and comparative analysis of the mouse genome Nature 2002, 420(6915):520-562. 12466850
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
-
2
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
16341006
-
Lindblad-Toh K Wade CM Mikkelsen TS Karlsson EK Jaffe DB Kamal M Clamp M Chang JL Kulbokas EJ 3rd Zody MC et al Genome sequence, comparative analysis and haplotype structure of the domestic dog Nature 2005, 438(7069):803-819. 16341006
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
Karlsson, E.K.4
Jaffe, D.B.5
Kamal, M.6
Clamp, M.7
Chang, J.L.8
Kulbokas III, E.J.9
Zody, M.C.10
-
3
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
11237011
-
Lander ES Linton LM Birren B Nusbaum C Zody MC Baldwin J Devon K Dewar K Doyle M FitzHugh W et al Initial sequencing and analysis of the human genome Nature 2001, 409(6822):860-921. 11237011
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
4
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
15057822
-
Gibbs RA Weinstock GM Metzker ML Muzny DM Sodergren EJ Scherer S Scott G Steffen D Worley KC Burch PE et al Genome sequence of the Brown Norway rat yields insights into mammalian evolution Nature 2004, 428(6982):493-521. 15057822
-
(2004)
Nature
, vol.428
, Issue.6982
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
Muzny, D.M.4
Sodergren, E.J.5
Scherer, S.6
Scott, G.7
Steffen, D.8
Worley, K.C.9
Burch, P.E.10
-
5
-
-
37249005195
-
Steady progress and recent breakthroughs in the accuracy of automated genome annotation
-
18087260
-
Brent MR Steady progress and recent breakthroughs in the accuracy of automated genome annotation Nat Rev Genet 2008, 9(1):62-73. 18087260
-
(2008)
Nat Rev Genet
, vol.9
, Issue.1
, pp. 62-73
-
-
Brent, M.R.1
-
6
-
-
2442713832
-
GeneWise and Genomewise
-
479130 15123596
-
Birney E Clamp M Durbin R GeneWise and Genomewise Genome Res 2004, 14(5):988-995. 479130 15123596
-
(2004)
Genome Res
, vol.14
, Issue.5
, pp. 988-995
-
-
Birney, E.1
Clamp, M.2
Durbin, R.3
-
7
-
-
17444437765
-
Integrating genomic homology into gene structure prediction
-
11473003
-
Korf I Flicek P Duan D Brent MR Integrating genomic homology into gene structure prediction Bioinformatics 2001, 17(Suppl 1):140-148. 11473003
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Korf, I.1
Flicek, P.2
Duan, D.3
Brent, M.R.4
-
8
-
-
0037268583
-
Comparative gene prediction in human and mouse
-
430976 12529313
-
Parra G Agarwal P Abril JF Wiehe T Fickett JW Guigo R Comparative gene prediction in human and mouse Genome Res 2003, 13(1):108-117. 430976 12529313
-
(2003)
Genome Res
, vol.13
, Issue.1
, pp. 108-117
-
-
Parra, G.1
Agarwal, P.2
Abril, J.F.3
Wiehe, T.4
Fickett, J.W.5
Guigo, R.6
-
9
-
-
20744436518
-
Tree pattern matching in phylogenetic trees: Automatic search for orthologs or paralogs in homologous gene sequence databases
-
15713731
-
Dufayard JF Duret L Penel S Gouy M Rechenmann F Perriere G Tree pattern matching in phylogenetic trees: Automatic search for orthologs or paralogs in homologous gene sequence databases Bioinformatics 2005, 21(11):2596-2603. 15713731
-
(2005)
Bioinformatics
, vol.21
, Issue.11
, pp. 2596-2603
-
-
Dufayard, J.F.1
Duret, L.2
Penel, S.3
Gouy, M.4
Rechenmann, F.5
Perriere, G.6
-
10
-
-
33749342164
-
Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human
-
1584324 17009864
-
Goodstadt L Ponting CP Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human PLoS Comput Biol 2006, 2(9):e133. 1584324 17009864
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.9
-
-
Goodstadt, L.1
Ponting, C.P.2
-
11
-
-
33645798112
-
Genome-wide identification of human functional DNA using a neutral indel model
-
1326222 16410828
-
Lunter G Ponting CP Hein J Genome-wide identification of human functional DNA using a neutral indel model PLoS Comput Biol 2006, 2(1):e5. 1326222 16410828
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.1
-
-
Lunter, G.1
Ponting, C.P.2
Hein, J.3
-
12
-
-
33748675254
-
An RNA gene expressed during cortical development evolved rapidly in humans
-
16915236
-
Pollard KS Salama SR Lambert N Lambot MA Coppens S Pedersen JS Katzman S King B Onodera C Siepel A et al An RNA gene expressed during cortical development evolved rapidly in humans Nature 2006, 443(7108):167-172. 16915236
-
(2006)
Nature
, vol.443
, Issue.7108
, pp. 167-172
-
-
Pollard, K.S.1
Salama, S.R.2
Lambert, N.3
Lambot, M.A.4
Coppens, S.5
Pedersen, J.S.6
Katzman, S.7
King, B.8
Onodera, C.9
Siepel, A.10
-
13
-
-
33847255798
-
AutoGRAPH: An interactive web server for automating and visualizing comparative genome maps
-
17145741
-
Derrien T Andre C Galibert F Hitte C AutoGRAPH: An interactive web server for automating and visualizing comparative genome maps Bioinformatics 2007, 23(4):498-499. 17145741
-
(2007)
Bioinformatics
, vol.23
, Issue.4
, pp. 498-499
-
-
Derrien, T.1
Andre, C.2
Galibert, F.3
Hitte, C.4
-
14
-
-
33645766047
-
The fragile breakage versus random breakage models of chromosome evolution
-
1378107 16501665
-
Peng Q Pevzner PA Tesler G The fragile breakage versus random breakage models of chromosome evolution PLoS Comput Biol 2006, 2(2):e14. 1378107 16501665
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.2
-
-
Peng, Q.1
Pevzner, P.A.2
Tesler, G.3
-
15
-
-
0036211065
-
GRIMM: Genome rearrangements web server
-
Tesler G GRIMM: Genome rearrangements web server Bioinformatics 2002 18 3 492 493 11934753
-
(2002)
Bioinformatics
, vol.18
, pp. 492-493
-
-
Tesler, G.1
-
16
-
-
37648999313
-
Distinguishing protein-coding and noncoding genes in the human genome
-
2148306 18040051
-
Clamp M Fry B Kamal M Xie X Cuff J Lin MF Kellis M Lindblad-Toh K Lander ES Distinguishing protein-coding and noncoding genes in the human genome Proc Natl Acad Sci USA 2007, 104(49):19428-19433. 2148306 18040051
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.49
, pp. 19428-19433
-
-
Clamp, M.1
Fry, B.2
Kamal, M.3
Xie, X.4
Cuff, J.5
Lin, M.F.6
Kellis, M.7
Lindblad-Toh, K.8
Lander, E.S.9
-
17
-
-
0037417884
-
Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes
-
298740 12552088
-
Guigo R Dermitzakis ET Agarwal P Ponting CP Parra G Reymond A Abril JF Keibler E Lyle R Ucla C et al Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes Proc Natl Acad Sci USA 2003, 100(3):1140-1145. 298740 12552088
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.3
, pp. 1140-1145
-
-
Guigo, R.1
Dermitzakis, E.T.2
Agarwal, P.3
Ponting, C.P.4
Parra, G.5
Reymond, A.6
Abril, J.F.7
Keibler, E.8
Lyle, R.9
Ucla, C.10
-
18
-
-
38849145798
-
Targeted discovery of novel human exons by comparative genomics
-
2099585 17989246
-
Siepel A Diekhans M Brejova B Langton L Stevens M Comstock CL Davis C Ewing B Oommen S Lau C et al Targeted discovery of novel human exons by comparative genomics Genome Res 2007, 17(12):1763-1773. 2099585 17989246
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1763-1773
-
-
Siepel, A.1
Diekhans, M.2
Brejova, B.3
Langton, L.4
Stevens, M.5
Comstock, C.L.6
Davis, C.7
Ewing, B.8
Oommen, S.9
Lau, C.10
-
19
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
17994087
-
Clark AG Eisen MB Smith DR Bergman CM Oliver B Markow TA Kaufman TC Kellis M Gelbart W Iyer VN et al Evolution of genes and genomes on the Drosophila phylogeny Nature 2007, 450(7167):203-218. 17994087
-
(2007)
Nature
, vol.450
, Issue.7167
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
Bergman, C.M.4
Oliver, B.5
Markow, T.A.6
Kaufman, T.C.7
Kellis, M.8
Gelbart, W.9
Iyer, V.N.10
-
20
-
-
38549148421
-
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
-
2099592 17989258
-
Heger A Ponting CP Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes Genome Res 2007, 17(12):1837-1849. 2099592 17989258
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1837-1849
-
-
Heger, A.1
Ponting, C.P.2
-
21
-
-
38849101777
-
Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes
-
2099591 17989253
-
Lin MF Carlson JW Crosby MA Matthews BB Yu C Park S Wan KH Schroeder AJ Gramates LS St Pierre SE et al Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes Genome Res 2007, 17(12):1823-1836. 2099591 17989253
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1823-1836
-
-
Lin, M.F.1
Carlson, J.W.2
Crosby, M.A.3
Matthews, B.B.4
Yu, C.5
Park, S.6
Wan, K.H.7
Schroeder, A.J.8
Gramates, L.S.9
St Pierre, S.E.10
-
23
-
-
0036889686
-
Orthology, paralogy and proposed classification for paralog subtypes
-
12446146
-
Sonnhammer EL Koonin EV Orthology, paralogy and proposed classification for paralog subtypes Trends Genet 2002, 18(12):619-620. 12446146
-
(2002)
Trends Genet
, vol.18
, Issue.12
, pp. 619-620
-
-
Sonnhammer, E.L.1
Koonin, E.V.2
-
24
-
-
22744440499
-
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
-
16040707
-
Murphy WJ Larkin DM Everts-van der Wind A Bourque G Tesler G Auvil L Beever JE Chowdhary BP Galibert F Gatzke L et al Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps Science 2005, 309(5734):613-617. 16040707
-
(2005)
Science
, vol.309
, Issue.6734
, pp. 613-617
-
-
Murphy, W.J.1
Larkin, D.M.2
Everts-van der Wind, A.3
Bourque, G.4
Tesler, G.5
Auvil, L.6
Beever, J.E.7
Chowdhary, B.P.8
Galibert, F.9
Gatzke, L.10
-
25
-
-
0033569387
-
The promise of comparative genomics in mammals
-
10521336
-
O'Brien SJ Menotti-Raymond M Murphy WJ Nash WG Wienberg J Stanyon R Copeland NG Jenkins NA Womack JE Marshall Graves JA The promise of comparative genomics in mammals Science 1999, 286(5439):458-462. 10521336
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 458-462
-
-
O'Brien, S.J.1
Menotti-Raymond, M.2
Murphy, W.J.3
Nash, W.G.4
Wienberg, J.5
Stanyon, R.6
Copeland, N.G.7
Jenkins, N.A.8
Womack, J.E.9
Marshall Graves, J.A.10
-
26
-
-
1842427830
-
The evolutionary dynamics of eukaryotic gene order
-
15131653
-
Hurst LD Pal C Lercher MJ The evolutionary dynamics of eukaryotic gene order Nat Rev Genet 2004, 5(4):299-310. 15131653
-
(2004)
Nat Rev Genet
, vol.5
, Issue.4
, pp. 299-310
-
-
Hurst, L.D.1
Pal, C.2
Lercher, M.J.3
-
27
-
-
37249085295
-
Genome-scale analysis of positionally relocated genes
-
2099595 17989252
-
Bhutkar A Russo SM Smith TF Gelbart WM Genome-scale analysis of positionally relocated genes Genome Res 2007, 17(12):1880-1887. 2099595 17989252
-
(2007)
Genome Res
, vol.17
, Issue.12
, pp. 1880-1887
-
-
Bhutkar, A.1
Russo, S.M.2
Smith, T.F.3
Gelbart, W.M.4
-
28
-
-
40049091292
-
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
-
18218656
-
Stanke M Diekhans M Baertsch R Haussler D Using native and syntenically mapped cDNA alignments to improve de novo gene finding Bioinformatics 2008, 24(5):637-644. 18218656
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 637-644
-
-
Stanke, M.1
Diekhans, M.2
Baertsch, R.3
Haussler, D.4
-
29
-
-
33745173827
-
Iterative gene prediction and pseudogene removal improves genome annotation
-
1457044 16651666
-
van Baren MJ Brent MR Iterative gene prediction and pseudogene removal improves genome annotation Genome Res 2006, 16(5):678-685. 1457044 16651666
-
(2006)
Genome Res
, vol.16
, Issue.5
, pp. 678-685
-
-
van Baren, M.J.1
Brent, M.R.2
-
30
-
-
38549176691
-
Ensembl 2008
-
2238821 18000006
-
Flicek P Aken BL Beal K Ballester B Caccamo M Chen Y Clarke L Coates G Cunningham F Cutts T et al Ensembl 2008 Nucleic Acids Res 2008, 36: Database D707-714. 2238821 18000006
-
(2008)
Nucleic Acids Res
-
-
Flicek, P.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cunningham, F.9
Cutts, T.10
-
31
-
-
2942550697
-
GOTree Machine (GOTM): A web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
-
373441 14975175
-
Zhang B Schmoyer D Kirov S Snoddy J GOTree Machine (GOTM): A web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies BMC Bioinformatics 2004, 5:16. 373441 14975175
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 16
-
-
Zhang, B.1
Schmoyer, D.2
Kirov, S.3
Snoddy, J.4
-
32
-
-
34248596154
-
An analysis of the gene complement of a marsupial, Monodelphis domestica: Evolution of lineage-specific genes and giant chromosomes
-
1899124 17495010
-
Goodstadt L Heger A Webber C Ponting CP An analysis of the gene complement of a marsupial, Monodelphis domestica: Evolution of lineage-specific genes and giant chromosomes Genome Res 2007, 17(7):969-981. 1899124 17495010
-
(2007)
Genome Res
, vol.17
, Issue.7
, pp. 969-981
-
-
Goodstadt, L.1
Heger, A.2
Webber, C.3
Ponting, C.P.4
-
33
-
-
0037264074
-
Genome rearrangements in mammalian evolution: Lessons from human and mouse genomes
-
430962 12529304
-
Pevzner P Tesler G Genome rearrangements in mammalian evolution: Lessons from human and mouse genomes Genome Res 2003, 13(1):37-45. 430962 12529304
-
(2003)
Genome Res
, vol.13
, Issue.1
, pp. 37-45
-
-
Pevzner, P.1
Tesler, G.2
-
34
-
-
36949006683
-
Are there rearrangement hotspots in the human genome?
-
2065889 17997591
-
Alekseyev MA Pevzner PA Are there rearrangement hotspots in the human genome? PLoS Comput Biol 2007, 3(11):e209. 2065889 17997591
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.11
-
-
Alekseyev, M.A.1
Pevzner, P.A.2
-
35
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
553969 15713233
-
Slater GS Birney E Automated generation of heuristics for biological sequence comparison BMC Bioinformatics 2005, 6:31. 553969 15713233
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
36
-
-
1342263801
-
Gene structure conservation aids similarity based gene prediction
-
373336 14764925
-
Meyer IM Durbin R Gene structure conservation aids similarity based gene prediction Nucleic Acids Res 2004, 32(2):776-783. 373336 14764925
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.2
, pp. 776-783
-
-
Meyer, I.M.1
Durbin, R.2
-
37
-
-
0037252705
-
Database resources of the National Center for Biotechnology
-
165480 12519941
-
Wheeler DL Church DM Federhen S Lash AE Madden TL Pontius JU Schuler GD Schriml LM Sequeira E Tatusova TA et al Database resources of the National Center for Biotechnology Nucleic Acids Res 2003, 31(1):28-33. 165480 12519941
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 28-33
-
-
Wheeler, D.L.1
Church, D.M.2
Federhen, S.3
Lash, A.E.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Sequeira, E.9
Tatusova, T.A.10
-
38
-
-
36549003965
-
InterPro and InterProScan: Tools for protein sequence classification and comparison
-
18025686
-
Mulder N Apweiler R InterPro and InterProScan: Tools for protein sequence classification and comparison Methods Mol Biol 2007, 396:59-70. 18025686
-
(2007)
Methods Mol Biol
, vol.396
, pp. 59-70
-
-
Mulder, N.1
Apweiler, R.2
-
39
-
-
32144432437
-
The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
-
16301204
-
Arnold K Bordoli L Kopp J Schwede T The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling Bioinformatics 2006, 22(2):195-201. 16301204
-
(2006)
Bioinformatics
, vol.22
, Issue.2
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
40
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
1538787
-
Luthy R Bowie JU Eisenberg D Assessment of protein models with three-dimensional profiles Nature 1992, 356(6364):83-85. 1538787
-
(1992)
Nature
, vol.356
, Issue.6364
, pp. 83-85
-
-
Luthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
41
-
-
33644549987
-
Nested genes in the human genome
-
16084061
-
Yu P Ma D Xu M Nested genes in the human genome Genomics 2005, 86(4):414-422. 16084061
-
(2005)
Genomics
, vol.86
, Issue.4
, pp. 414-422
-
-
Yu, P.1
Ma, D.2
Xu, M.3
-
42
-
-
0348013073
-
A genome-wide survey of human pseudogenes
-
403797 14656963
-
Torrents D Suyama M Zdobnov E Bork P A genome-wide survey of human pseudogenes Genome Res 2003, 13(12):2559-2567. 403797 14656963
-
(2003)
Genome Res
, vol.13
, Issue.12
, pp. 2559-2567
-
-
Torrents, D.1
Suyama, M.2
Zdobnov, E.3
Bork, P.4
-
43
-
-
33749997527
-
Systematic identification of pseudogenes through whole genome expression evidence profiling
-
1636364 16945953
-
Yao A Charlab R Li P Systematic identification of pseudogenes through whole genome expression evidence profiling Nucleic Acids Res 2006, 34(16):4477-4485. 1636364 16945953
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.16
, pp. 4477-4485
-
-
Yao, A.1
Charlab, R.2
Li, P.3
-
44
-
-
34250377325
-
Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
-
1891343 17568002
-
Zheng D Frankish A Baertsch R Kapranov P Reymond A Choo SW Lu Y Denoeud F Antonarakis SE Snyder M et al Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution Genome Res 2007, 17(6):839-851. 1891343 17568002
-
(2007)
Genome Res
, vol.17
, Issue.6
, pp. 839-851
-
-
Zheng, D.1
Frankish, A.2
Baertsch, R.3
Kapranov, P.4
Reymond, A.5
Choo, S.W.6
Lu, Y.7
Denoeud, F.8
Antonarakis, S.E.9
Snyder, M.10
-
45
-
-
47349109604
-
Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations
-
2435553 18505555
-
Hallstrom BM Janke A Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations BMC Evol Biol 2008, 8:162. 2435553 18505555
-
(2008)
BMC Evol Biol
, vol.8
, pp. 162
-
-
Hallstrom, B.M.1
Janke, A.2
-
46
-
-
0031110886
-
From gene to organismal phylogeny: Reconciled trees and the gene tree/ species tree problem
-
9126565
-
Page RD Charleston MA From gene to organismal phylogeny: Reconciled trees and the gene tree/species tree problem Mol Phylogenet Evol 1997, 7(2):231-240. 9126565
-
(1997)
Mol Phylogenet Evol
, vol.7
, Issue.2
, pp. 231-240
-
-
Page, R.D.1
Charleston, M.A.2
-
47
-
-
0142124263
-
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
-
403683 14525925
-
Krylov DM Wolf YI Rogozin IB Koonin EV Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution Genome Res 2003, 13(10):2229-2235. 403683 14525925
-
(2003)
Genome Res
, vol.13
, Issue.10
, pp. 2229-2235
-
-
Krylov, D.M.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
48
-
-
23144464901
-
WebGestalt: An integrated system for exploring gene sets in various biological contexts
-
1160236 15980575
-
Zhang B Kirov S Snoddy J WebGestalt: An integrated system for exploring gene sets in various biological contexts Nucleic Acids Res 2005, 33: Web Server W741-748. 1160236 15980575
-
(2005)
Nucleic Acids Res
-
-
Zhang, B.1
Kirov, S.2
Snoddy, J.3
-
49
-
-
0035115845
-
T-targets: Clues to understanding the functions of T-box proteins
-
11148447
-
Tada M Smith JC T-targets: Clues to understanding the functions of T-box proteins Dev Growth Differ 2001, 43(1):1-11. 11148447
-
(2001)
Dev Growth Differ
, vol.43
, Issue.1
, pp. 1-11
-
-
Tada, M.1
Smith, J.C.2
-
50
-
-
2442707676
-
The Ensembl automatic gene annotation system
-
479124 15123590
-
Curwen V Eyras E Andrews TD Clarke L Mongin E Searle SM Clamp M The Ensembl automatic gene annotation system Genome Res 2004, 14(5):942-950. 479124 15123590
-
(2004)
Genome Res
, vol.14
, Issue.5
, pp. 942-950
-
-
Curwen, V.1
Eyras, E.2
Andrews, T.D.3
Clarke, L.4
Mongin, E.5
Searle, S.M.6
Clamp, M.7
-
51
-
-
39049157173
-
Fast-evolving noncoding sequences in the human genome
-
2394770 17578567
-
Bird CP Stranger BE Liu M Thomas DJ Ingle CE Beazley C Miller W Hurles ME Dermitzakis ET Fast-evolving noncoding sequences in the human genome Genome Biol 2007, 8(6):R118. 2394770 17578567
-
(2007)
Genome Biol
, vol.8
, Issue.6
-
-
Bird, C.P.1
Stranger, B.E.2
Liu, M.3
Thomas, D.J.4
Ingle, C.E.5
Beazley, C.6
Miller, W.7
Hurles, M.E.8
Dermitzakis, E.T.9
-
52
-
-
33745051802
-
Reference based annotation with GeneMapper
-
1557983 16600017
-
Chatterji S Pachter L Reference based annotation with GeneMapper Genome Biol 2006, 7(4):R29. 1557983 16600017
-
(2006)
Genome Biol
, vol.7
, Issue.4
-
-
Chatterji, S.1
Pachter, L.2
-
53
-
-
33644630612
-
Comparisons of dN/dS are time dependent for closely related bacterial genomes
-
16239014
-
Rocha EP Smith JM Hurst LD Holden MT Cooper JE Smith NH Feil EJ Comparisons of dN/dS are time dependent for closely related bacterial genomes J Theor Biol 2006, 239(2):226-235. 16239014
-
(2006)
J Theor Biol
, vol.239
, Issue.2
, pp. 226-235
-
-
Rocha, E.P.1
Smith, J.M.2
Hurst, L.D.3
Holden, M.T.4
Cooper, J.E.5
Smith, N.H.6
Feil, E.J.7
-
56
-
-
33947617347
-
Backup without redundancy: Genetic interactions reveal the cost of duplicate gene loss
-
1847942 17389874
-
Ihmels J Collins SR Schuldiner M Krogan NJ Weissman JS Backup without redundancy: Genetic interactions reveal the cost of duplicate gene loss Mol Syst Biol 2007, 3:86. 1847942 17389874
-
(2007)
Mol Syst Biol
, vol.3
, pp. 86
-
-
Ihmels, J.1
Collins, S.R.2
Schuldiner, M.3
Krogan, N.J.4
Weissman, J.S.5
-
57
-
-
36148960409
-
The pattern of evolution of smaller-scale gene duplicates in mammalian genomes is more consistent with neo- than subfunctionalisation
-
17957399
-
Hughes T Liberles DA The pattern of evolution of smaller-scale gene duplicates in mammalian genomes is more consistent with neo- than subfunctionalisation J Mol Evol 2007, 65(5):574-588. 17957399
-
(2007)
J Mol Evol
, vol.65
, Issue.5
, pp. 574-588
-
-
Hughes, T.1
Liberles, D.A.2
-
58
-
-
9144269670
-
EnsMart: A generic system for fast and flexible access to biological data
-
314293 14707178
-
Kasprzyk A Keefe D Smedley D London D Spooner W Melsopp C Hammond M Rocca-Serra P Cox T Birney E EnsMart: A generic system for fast and flexible access to biological data Genome Res 2004, 14(1):160-169. 314293 14707178
-
(2004)
Genome Res
, vol.14
, Issue.1
, pp. 160-169
-
-
Kasprzyk, A.1
Keefe, D.2
Smedley, D.3
London, D.4
Spooner, W.5
Melsopp, C.6
Hammond, M.7
Rocca-Serra, P.8
Cox, T.9
Birney, E.10
-
59
-
-
0029259085
-
Maximum discrimination hidden Markov models of sequence consensus
-
7497123
-
Eddy SR Mitchison G Durbin R Maximum discrimination hidden Markov models of sequence consensus J Comput Biol 1995, 2(1):9-23. 7497123
-
(1995)
J Comput Biol
, vol.2
, Issue.1
, pp. 9-23
-
-
Eddy, S.R.1
Mitchison, G.2
Durbin, R.3
-
60
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
9367129
-
Yang Z PAML: A program package for phylogenetic analysis by maximum likelihood Comput Appl Biosci 1997, 13(5):555-556. 9367129
-
(1997)
Comput Appl Biosci
, vol.13
, Issue.5
, pp. 555-556
-
-
Yang, Z.1
|