Performance of methods for estimating size-transition matrices using tag-recapture data

Marine and Freshwater Research

Volumn 60, Issue 2, 2009, Pages 168-182

  Punt, André E ^a,b   Buckworth, Rik C ^c   Dichmont, Catherine M ^a   Ye, Yimin ^a,d  

^a CSIRO   (Australia)

^b UNIVERSITY OF WASHINGTON   (United States)

^c Fisheries   (Australia)

^d FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS   (Italy)

Author keywords

Australia; Prawns; Size structured models; Tagging data

Indexed keywords

CRUSTACEAN; FISHERY MANAGEMENT; GROWTH CURVE; INDIVIDUAL VARIATION; MARK-RECAPTURE METHOD; MONTE CARLO ANALYSIS; PERFORMANCE ASSESSMENT; POPULATION DYNAMICS; POPULATION MODELING; TAGGING;

AUSTRALASIA; AUSTRALIA;

DECAPODA (CRUSTACEA); LOBSTER; PENAEUS MONODON; PENAEUS SEMISULCATUS;

EID: 60749110732     PISSN: 13231650     EISSN: None     Source Type: Journal    
DOI: 10.1071/MF08217     Document Type: Article

References (30)

1. Akaike, H. (1974). A new look at the statistical model identification. IEEE Transactions on Automatic Control 19, 716-723. doi:10.1109/TAC.1974.1100705
2. Brandão, A., Butterworth, D. S., Johnston, S. J., and Glazer, J. P. (2004). Using a GLMM to estimate the somatic growth rate trend for west coast rock lobster. Fisheries Research 70, 339-349. doi:10.1016/J. FISHRES.2004.08.012
3. Breen, P. A., Kim, S. W., and Andrew, N. L. (2003). A length-based Bayesian stock assessment model for the New Zealand abalone Haliotis iris. Marine and Freshwater Research 54, 619-634. doi:10.1071/MF02174
4. Buckworth, R. C. (1992). Movements and growth of tagged blue endeavour prawns Metapenaeus endeavouri (Schmitt 1926) in the western Gulf of Carpentaria, Australia. Australian Journal of Marine and Freshwater Research 43, 1283-1299. doi:10.1071/MF9921283
5. Burnham, K. P., and Anderson, D. R. (2002). 'Model Selection and Inference: A Practical Information-Theoretic Approach.' 2nd edn. (Springer-Verlag: New York.)
6. Chen, Y., Kanaiwa, M., and Wilson, C. (2005). Developing and evaluating a size-structured stock assessment model for the American lobster, Homarus americanus, fishery. New Zealand Journal of Marine and Freshwater Research 39, 645-660.
7. de Lestang, S., and Melville-Smith, R. (2006). West coast rock lobster managed fishery status report. In 'State of the Fisheries Report 2005/06'. (Eds W. J. Fetcher and F. Head.) pp. 14-21. (Western Australian Department of Fisheries: Perth.)
8. Dichmont, C. M., Punt, A. E., Deng, A., Dell, Q., and Venables, W. (2003). Application of a weekly delay-difference model to commercial catch and effort data in Australia's Northern Prawn Fishery. Fisheries Research 65, 335-350. doi:10.1016/J.FISHRES.2003.09.024
9. Eveson, J. P., Polacheck, T., and Laslett, G. M. (2007). Consequences of assuming an incorrect error structure in von Bertalanffy growth models: a simulation study. Canadian Journal of Fisheries and Aquatic Sciences 64, 602-617. doi:10.1139/F07-036
10. Food and Agriculture Organization (2008). Statistics. Available online at http://www.fao.org/corp/statistics/en/ [Verified January 2008].
11. Galeano, D., Vieira, S., Shafron, W., and Newton, P. (2006). Australian fisheries surveys report 2005. ABARE report prepared for the Fisheries Research Fund, Canberra.
12. Hobday, D., and Punt, A. E. (2001). Size-structured population modelling and risk assessment of the Victorian southern rock lobster, Jasus edwardsii, fishery. Marine and Freshwater Research 52, 1495-1507. doi:10.1071/MF01050
13. Kim, S. W., Bentley, N., Starr, P. J., and Breen, P. A. (2004). Assessment of red rock lobsters (Jasus edwardsii) in CRA 4 and CRA 5 in 2003. New Zealand Fisheries Assessment Report 2004(8).
14. Laslett, G. M., Eveson, J. P., and Polacheck, T. (2002). A flexible maximum likelihood approach for fitting growth curves to tag-recapture http://www.publish.csiro.au/journals/mfrdata. Canadian Journal of Fisheries and Aquatic Sciences 59, 976-986. doi:10.1139/F02-069
15. Maunder, M. N. (2001). Growth of skipjack tuna (Katsuwonus pelamis) in the eastern Pacific Ocean, as estimated from tagging data. Bulletin of the Inter-American Tropical Tuna Commission 22, 95-131.
16. McGarvey, R., and Feenstra, J. E. (2001). Estimating length-transition probabilities as polynomial functions of premoult length. Marine and Freshwater Research 52, 1517-1526. doi:10.1071/MF01172
17. McGarvey, R., Ferguson, G. J., and Prescot, J. H. (1999). Spatial variation in mean growth rates at size of southern rock lobster, Jasus edwardsii, in South Australian waters. Marine and Freshwater Research 50, 333-342. doi:10.1071/MF97172
18. McLoughlin, K. (2006). Northern Prawn Fishery. In 'Fishery Status Reports 2005: Status of Fish Stocks Managed by the Australian Government'. (Ed. K. McLoughlin.) pp. 23-34. (Bureau of Rural Sciences: Canberra.)
19. Pauly, D. (1990). Length converted catch curves and the seasonal growth of fishes. ICLARM Fishbyte 8, 33-38.
20. Pauly, D., Soriano-Bertz, M., Moreau, J., and Jarre-Teichmann, A. (1992). A new model accounting for seasonal growth cessation in fishes. Australian Journal of Marine and Freshwater Research 43, 1151-1156. doi:10.1071/MF9921151
21. Punt, A. E., Kennedy, R. B., and Frusher, S. (1997). Estimating the size-transition matrix for Tasmanian rock lobster, Jasus edwardsii. Marine and Freshwater Research 48, 981-992. doi:10.1071/MF97017
22. Punt, A. E., Hobday, D., Gerhard, J., and Troynikov, V. S. (2006). Modelling growth of rock lobsters, Jasus edwardsii, off Victoria, Australia using models that allow for individual variation in growth parameters.Fisheries Research 82, 119-130. doi:10.1016/J.FISHRES. 2006.08.003
23. Sainsbury, K. J. (1980). Effect of individual variability on the von Bertalanffy growth equation. Canadian Journal of Fisheries and Aquatic Sciences 37, 241-247. doi:10.1139/F80-031
24. Schnute, J. (1981). A versatile growth model with statistically stable parameters. Canadian Journal of Fisheries and Aquatic Sciences 38, 1128-1140. doi:10.1139/F81-153
25. Schwarz, G. (1978). Estimating the dimension of a model. Annals of Statistics 6, 461-464. doi:10.1214/AOS/1176344136
26. Smith, M. T., and Addison, J. T. (2003). Methods for stock assessment of crustacean fisheries. Fisheries Research 65, 231-256. doi:10.1016/J.FISHRES.2003.09.017
27. Somers, I. F., and Kirkwood, G. P. (1991). Population ecology of the grooved tiger prawn, Penaeus semisulcatus, in the north-western Gulf of Carpentaria, Australia: growth, movement, age structure and infestation by the bopyrid parasite Epipenaeon ingens. Australian Journal of Marine and Freshwater Research 42, 349-367. doi:10.1071/MF9910349
28. Sullivan, P. J., Lai, H. L., and Gallucci, V. F. (1990). A catch-at-length analysis that incorporates a stochastic model of growth. Canadian Journal of Fisheries and Aquatic Sciences 47, 184-198. doi:10.1139/F90-021
29. Troynikov, V. S. (1998). Probability density functions useful for parameterization of heterogeneity in growth and allometry data. Bulletin of Mathematical Biology 60, 1099-1121. doi:10.1006/BULM.1998.0058
30. Wang, Y.-G., Thomas, M. R., and Somers, I. F. (1995). A maximum likelihood approach for estimating growth from tag-recapture data. Canadian Journal of Fisheries and Aquatic Sciences 52, 252-259. doi:10.1139/F95-025