Automated quantification of cellular traffic in living cells

Journal of Neuroscience Methods

Volumn 178, Issue 2, 2009, Pages 378-384

  Broeke, Jurjen H P ^a   Ge, Haifang ^b,c   Dijkstra, Ineke M ^a   Cemgil, Ali Taylan ^b   Riedl, Jürgen A ^a   Niels Cornelisse, L ^a   Toonen, Ruud F ^a   Verhage, Matthijs ^a   Fitzgerald, William J ^b  

^a VU UNIVERSITY AMSTERDAM   (Netherlands)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c Synaptologics BV   (Netherlands)

Author keywords

Automatic tracking; Live cell imaging; Multi hypothesis tracking; Trafficking

Indexed keywords

ALGORITHM; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; ASTROCYTE; AUTOANALYSIS; CELL MIGRATION; COMPUTER MODEL; CONTROLLED STUDY; EMBRYO; IMAGE QUALITY; MOUSE; NERVE CELL; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS;

ALGORITHMS; ANIMALS; ASTROCYTES; AUTOMATION; BAYES THEOREM; BIOLOGICAL TRANSPORT; BRAIN; CELL LINE; CELLS, CULTURED; CYTOPLASMIC VESICLES; HUMANS; MICE; NEURONS; NEUROPEPTIDE Y; ORGANELLES; RECOMBINANT FUSION PROTEINS; SOFTWARE; TRANSDUCTION, GENETIC; TRANSFECTION;

EID: 60749084059     PISSN: 01650270     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2008.12.018     Document Type: Article

References (32)

1. Benfenati V., Nicchia G.P., Svelto M., Rapisarda C., Frigeri A., and Ferroni S. Functional down-regulation of volume-regulated anion channels in AQP4 knockdown cultured rat cortical astrocytes. J Neurochem 100 1 (2007) 87-104
2. Bertsekas D.P. The auction algorithm for assignment and other network flow problems. Interfaces 20 (1989) 133-149
3. Bezzi P., Gundersen V., Galbete J.L., Seifert G., Steinhäuser C., Pilati E., et al. Astrocytes contain a vesicular compartment that is competent for regulated exocytosis of glutamate. Nat Neurosci 7 6 (2004) 613-620
4. Chudakov D.M., Chepurnykh T.V., Belousov V.V., Lukyanov S., and Lukyanov K.A. Fast and precise protein tracking using repeated reversible photoactivation. Traffic 7 10 (2006) 1304-1310
5. Cooper A.A., Gitler A.D., Cashikar A., Haynes C.M., Hill K.J., Bhullar B., et al. Alpha-synuclein blocks ER-Golgi traffic and Rab1 rescues neuron loss in Parkinson's models. Science 313 5785 (2006) 324-328
6. De Wit J., Toonen R.F., Verhaagen J., and Verhage M. Vesicular trafficking of semaphorin 3A is activity-dependent and differs between axons and dendrites. Traffic 7 8 (2006) 1060-1077
7. Dijkstra I.M., De Haas A.H., Brouwer N., Boddeke H.W.G.M., and Biber K. Challenge with innate and protein antigens induces CCR7 expression by microglia in vitro and in vivo. Glia 54 8 (2006) 861-872
8. Garvey W.T., Maianu L., Zhu J.H., Brechtel-Hook G., Wallace P., and Baron A.D. Evidence for defects in the trafficking and translocation of GLUT4 glucose transporters in skeletal muscle as a cause of human insulin resistance. J Clin Invest 101 11 (1998) 2377-2386
9. Jourdain P., Bergersen L.H., Bhaukaurally K., Bezzi P., Santello M., Domercq M., et al. Glutamate exocytosis from astrocytes controls synaptic strength. Nat Neurosci 10 3 (2007) 331-339
10. Köhrmann M., Haubensak W., Hemraj I., Kaether C., Lessmann V.J., and Kiebler M.A. Fast, convenient, and effective method to transiently transfect primary hippocampal neurons. J Neurosci Res 58 6 (1999) 831-835
11. Lang T., Wacker I., Steyer J., Kaether C., Wunderlich I., Soldati T., et al. Ca2+-triggered peptide secretion in single cells imaged with green fluorescent protein and evanescent-wave microscopy. Neuron 18 6 (1997) 857-863
12. Lau C.G., and Zukin R.S. NMDA receptor trafficking in synaptic plasticity and neuropsychiatric disorders. Nat Rev Neurosci 8 6 (2007) 413-426
13. Luo Y., Raible D., and Raper J.A. Collapsin: a protein in brain that induces the collapse and paralysis of neuronal growth cones. Cell 75 2 (1993) 217-227
14. Meng L., Grimm W., and Donne J. Radar detection improvement by integration of multi-object tracking. In: Naupaul V.S. (Ed). Proc Fifth Int Conf Inform Fusion Int Soc. Information Fusion: Sunnyvale CA (2002) 1249-1255
15. Miesenböck G., De Angelis D.A., and Rothman J.E. Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins. Nature 394 6689 (1998) 192-195
16. Muth T.R., and Caplan M.J. Transport protein trafficking in polarized cells. Annu Rev Cell Develop Biol 19 (2003) 333-366
17. Oheim M., and Stühmer W. Tracking chromaffin granules on their way through the actin cortex. Eur Biophys J 29 2 (2000) 67-89
18. Ozawa T., Natori Y., Sato M., and Umezawa Y. Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat Methods 4 5 (2007) 413-419
19. Poot M., Zhang Y.Z., Krämer J.A., Wells K.S., Jones L.J., Hanzel D.K., et al. Analysis of mitochondrial morphology and function with novel fixable fluorescent stains. J Histochem Cytochem 44 12 (1996) 1363-1372
20. Potokar M., Kreft M., Li L., Andersson J.D., Pangrsic T., Chowdhury H.H., et al. Cytoskeleton and vesicle mobility in astrocytes. Traffic 8 1 (2007) 12-20
21. Racine V., Sachse M., Salamero J., Fraisier V., Trubuil A., and Sibarita J.-B. Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells. J Microsci 225 3 (2007) 214-228
22. Reid D. An algorithm for tracking multiple targets. IEEE Trans Automat Control 24 6 (1979) 843-854
23. Rogaeva E., Meng Y., Lee J.H., Gu Y., Kawarai T., Zou F., et al. The neuronal sortilin-related receptor SORL1 is genetically associated with Alzheimer disease. Nat Genet 39 2 (2007) 168-177
24. Rong J., McGuire J.R., Fang Z.-H., Sheng G., Shin J.-Y., Li S.-H., et al. Regulation of intracellular trafficking of huntingtin-associated protein-1 is critical for TrkA protein levels and neurite outgrowth. J Neurosci 26 22 (2006) 6019-6030
25. Scales S.J., Pepperkok R., and Kreis T.E. Visualization of ER-to-Golgi transport in living cells reveals a sequential mode of action for COPII and COPI. Cell 90 6 (1997) 1137-1148
26. Sezgin M., and Sankur B. Survey over image thresholding techniques and quantitative performance evaluation. J Electron Imag 13 (2004) 146-168
27. Shima D.T., Scales S.J., Kreis T.E., and Pepperkok R. Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 9 15 (1999) 821-824
28. Stepanova T., Slemmer J., Hoogenraad C.C., Lansbergen G., Dortland B., De Zeeuw C.I., et al. Visualization of microtubule growth in cultured neurons via the use of EB3-GFP (end-binding protein 3-green fluorescent protein). J Neurosci 23 7 (2003) 2655-2664
29. Tsaknakis H., Buckley M.D., and Washburn R.B. Tracking closely-spaced objects using multi-assignment algorithms. In: Laurel M.D. (Ed). Proc 1991 Joint Services Data Fusion Symposium. Johns Hopkins APL: Warminster PA (1991) 293-309
30. Wang Z., Shah J.V., Berns M.W., and Cleveland D.W. In vivo quantitative studies of dynamic intracellular processes using fluorescence correlation spectroscopy. Biophys J 91 1 (2006) 343-351
31. Watanabe T.M., Sato T., Gonda K., and Higuchi H. Three-dimensional nanometry of vesicle transport in living cells using dual-focus imaging optics. Biochem Biophys Res Commun 359 1 (2007) 1-7
32. Westphal V., Rizzoli S.O., Lauterbach M.A., Kamin D., Jahn R., and Hell S.W. Video-rate far-field optical nanoscopy dissects synaptic vesicle movement. Science 320 5873 (2008) 246-249