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Volumn 130, Issue 6, 2009, Pages

A highly parallelizable integral equation theory for three dimensional solvent distribution function: Application to biomolecules

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTALLOGRAPHY; DISTRIBUTION FUNCTIONS; FOURIER ANALYSIS; FOURIER TRANSFORMS; HYDRATES; HYDRATION; PROBABILITY DENSITY FUNCTION; PROGRAMMING THEORY; SOLVATION; X RAY CRYSTALLOGRAPHY;

EID: 60349130039     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3077209     Document Type: Article
Times cited : (32)

References (37)
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    • Since the computational time and required memories highly depend on the architecture of computer and the used library code (e.g., FFT), direct comparison between the present method and the original 3D-RISM is very difficult. In the present system, the method took less than one hour with 230 Mbytes memory per 1 core, performed by Core2 2 cores, 2.93 GHz (grids are 512 and 194, l is up to 10). The original 3D-RISM was performed by ITANIUM2, 1.4 GHz (2563 grids) and took a few hours. It should be emphasized that both of them are much faster than standard molecular simulations.
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    • Because the experimental data for the position of hydrated waters in unliganded state are not available in pdb data (1wz1.pdb), white spheres are missing in Fig.
    • Because the experimental data for the position of hydrated waters in unliganded state are not available in pdb data (1wz1.pdb), white spheres are missing in Fig.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.