Modelling the global coastal ocean

Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences

Volumn 367, Issue 1890, 2009, Pages 939-951

  Holt, Jason ^a   Harle, James ^a   Proctor, Roger ^a   Michel, Sylvain ^a,e   Ashworth, Mike ^b   Batstone, Crispian ^b   Allen, Icarus ^c   Holmes, Robert ^c   Smyth, Tim ^c   Haines, Keith ^d   Bretherton, Dan ^d   Smith, Gregory ^d  

^a NATIONAL OCEANOGRAPHY CENTRE   (United Kingdom)

^b DARESBURY LABORATORY   (United Kingdom)

^c PLYMOUTH MARINE LABORATORY   (United Kingdom)

^d UNIVERSITY OF READING   (United Kingdom)

^e IFREMER   (France)

Author keywords

European Regional Seas Ecosystem Model; G REX; Global shelf seas; Grid computing; Marine carbon cycle; POLCOMS

Indexed keywords

BIOGEOCHEMISTRY; CLIMATE CHANGE; CLIMATOLOGY; COASTAL ZONES; ECOLOGY; ECOSYSTEMS; MODEL STRUCTURES;

EUROPEAN REGIONAL SEAS ECOSYSTEM MODEL; G-REX; GLOBAL SHELF SEAS; MARINE CARBON CYCLE; POLCOMS;

GRID COMPUTING;

ARTICLE; CLIMATE; COMPUTER PROGRAM; COMPUTER SIMULATION; ECOLOGY; ENVIRONMENTAL MONITORING; INTERNET; METEOROLOGY; METHODOLOGY; SEA; THEORETICAL MODEL; WEATHER;

CLIMATE; COMPUTER SIMULATION; ECOLOGY; ENVIRONMENTAL MONITORING; INTERNET; METEOROLOGY; MODELS, THEORETICAL; OCEANS AND SEAS; SOFTWARE; WEATHER;

EID: 60349100836     PISSN: 1364503X     EISSN: None     Source Type: Journal    
DOI: 10.1098/rsta.2008.0210     Document Type: Article

References (30)

1. Allen, J. I., Holt, J. T., Blackford, J. C. & Proctor, R. 2007 Error quantification of a highresolution coupled hydrodynamic-ecosystem coastal-ocean model: part 2. Chlorophyll-a, nutrients and SPM. J. Mar. Syst. 68, 381-404. (doi:10.1016/j.jmarsys.2007.01.005)
2. Ashworth, M., Holt, J. T. & Proctor, R. 2004 Optimization of the POLCOMS hydrodynamic code for terascale high-performance computers. In Proc. 18th Int. Parallel & Distributed Processing Symposium, 26-30 April 2004, Santa, Fe, New Mexico.
3. Baretta, J. W., Ebenhoh, W. & Ruardij, P. 1995 The European Regional Seas Ecosystem Model, a complex marine ecosystem model. Neth. J. Sea Res. 33, 233-246. (doi:10.1016/0077-7579(95)90047-0)
4. Barnier, B. et al. 2006 Impact of partial steps and momentum advection schemes in a global ocean circulation model at eddy-permitting resolution. Ocean Dyn. 56, 543-567. (doi:10.1007/s10236-006-0090- 1)
5. Blackford, J. C., Allen, J. I. & Gilbert, F. J. 2004 Ecosystem dynamics at six contrasting sites: a generic modelling study. J. Mar. Syst. 52, 191-215. (doi:10.1016/j.jmarsys.2004.02.004)
6. 2 in the coastal ocean: diversity of ecosystems counts. Geophys. Res. Lett. 32, L14601. (doi:10.1029/2005GL023053)
7. Bretherton, D. A., Blower, J. D., Haines, K. & Smith, G. C. 2009 Running climate models on grids using G-REX. Phil. Trans. R. Soc. A 367, 847-853. (doi:10.1098/rsta.2008.0179)
8. Cadee, G. C. & Hegeman, J. 2002 Phytoplankton in the Marsdiep at the end of the 20th century; 30 years monitoring biomass, primary production, and Phaeocystis blooms. J. Sea Res. 48, 97-110. (doi:10.1016/S1385- 1101(02)00161-2)
9. Carr, M.-E. et al. 2006 A comparison of global estimates of marine primary production from ocean color. Deep Sea Res. II 11, 741-770. (doi:10.1016/j.dsr2.2006.01.028)
10. Fairall, C. W., Bradley, E. F., Hare, J. E., Grachev, A. A. & Edson, J. B. 2003 Bulk parameterization of air-sea fluxes: updates and verification for the COARE algorithm. J. Clim. 16, 571-591. (doi:10.1175/1520- 0442(2003)016<0571:BPOASF>2.0.CO;2)
11. Friedlingstein, P., Bopp, L., Ciais, P., Dufresne, J. L., Fairhead, L., LeTreut, H., Monfray, P. & Orr, J. 2001 Positive feedback between future climate change and the carbon cycle. Geophys. Res. Lett. 28, 1543-1546. (doi:10.1029/2000GL012015)
12. Friedlingstein, P. et al. 2006 Climate-carbon cycle feedback analysis: results from the (CMlP)-M-4 model intercomparison. J. Clim. 19, 3337-3353. (doi:10.1175/JCLI3800.1)
13. Gattuso, J. P., Frankignoulle, M. & Wollast, R. 1998 Carbon and carbonate metabolism in coastal aquatic ecosystems. Annu. Rev. Ecol. Syst. 29, 405-434. (doi:10.1146/annurev.ecolsys.29.1.405)
14. Holt, J. T. & James, I. D. 2001 An s-coordinate density evolving model of the North West European Continental Shelf. Part 1. Model description and density structure. J. Geophys. Res. 106, 14-015-14-034. (doi:10.1029/2000JC000304)
15. Holt, J. T., Allen, J. I., Proctor, R. & Gilbert, F. 2005 Error quantification of a high resolution coupled hydrodynamic-ecosystem coastal-ocean model: part 1. Model overview and assessment of the hydrodynamics. J. Mar. Syst. 57, 167-188. (doi:10.1016/j.jmarsys.2005.04.008)
16. Joint, I. & Pomeroy, A. 1993 Phytoplankton biomass and production in the southern North Sea, Mar. Ecol. Prog. Ser. 99, 169-182. (doi:10.3354/meps099169)
17. Longhurst, A., Sathyendranath, S., Platt, T. & Caverhill, C. 1995 An estimate of global primary production in the ocean from satellite radiometer data. J. Plankton Res. 17, 1245-1271. (doi:10. 1093/plankt/17.6.1245)
18. Mantoura, R. F. C., Martin, J. M., Wollast, R. (eds) 1991 Ocean margin processes in global change, Dahekm Workshop reports. Chichester, UK: Wiley.
19. Pain, C. C., Piggott, M. D., Goddard, A. J. H., Fang, F., Gorman, G. J., Marshall, D. P., Eaton, M. D., Power, P. W. & de Oliveira, C. R. E. 2005 Three-dimensional unstructured mesh ocean modelling. Ocean Model. 10, 5-33. (doi:10.1016/j.ocemod.2004.07.005)
20. Pernetta, J. C. & Milliman, J. D. 1995 Land ocean interactions in the coastal zone: implementation plan. International Gcosphere Biosphere Programme, Stockholm.
21. Reynolds, R. W., Liu, C., Smith, T. M., Chelton, D. B., Schlax, M. G. & Casey, K. S. 2007 Daily high-resolution-blended analyses for sea surface temperature. J. Clim. 20, 5473-5496. (doi:10. 1175/2007JCLI1824.1)
22. Sathyendranath, S., Prieur, L. & Morel, A. 1989 A three-component model of ocean colour and its application to remote sensing of phytoplankton pigments in coastal waters. Int. J. Remote Sensing 108, 1373-1394. (doi:10.1080/01431168908903974)
23. Smith, G. & Haines, K. In press. Evaluation of the S(T) assimilation method with the Argo dataset. Q. J. R. Meteorol. Soc.
24. Smyth, T. J., Moore, G. F., Hirata, T. & Aiken, J. 2006 A semi-analytical model for the derivation of ocean color inherent optical properties: description, implementation and performance assessment. Appl. Opt. 45, 8116-8131. (doi:10.13C4/AO.45.008116)
25. 2. Tellus B 51 701-712. (doi:10.1034/j.1600-0889.1999.t01-2-00010.x)
26. Umlauf, L. & Burchard, H. 2005 Second-order turbulence closure models for geophysical boundary layers. A review of recent work. Continental Shelf Res. 25, 795-827. (doi:10.1016/j.csr.2004.08.004)
27. Vörösmarty, C. J., Fekete, B. M., Meybeck, M. & Lammers, R. 2000 A simulated topological network representing the global system of rivers at 30-minute spatial resolution (STN-30). Glob. Biogeochem. Cycles 14, 599-621. (doi:10.1029/1999GB900092)
28. Walsh, J. J., Biscaye, P. E. & Csanady, G. T. 1988 The 1983-1984 shelf edge exchange processes (SEEP)-I experiment: hypotheses and highlights. Continental Shelf Res. 8, 435-456. (doi:10. 1016/0278-4343(88) 90063-5)
29. Walsh, J. J., Biscaye, P. E. & Csanady, G. T. 1991 Importance of continental margins in the marine biogeochemical cycling of carbon and nitrogen. Nature 359, 53-59. (doi:10.1038/350053a0)
30. Watson, R. & Pauly, D. 2001 Systematic distortions in world fisheries catch trends. Nature 414, 534-536. (doi: 10.1038/35107050)