메뉴 건너뛰기




Volumn , Issue , 2008, Pages 248-257

An efficient 0(1) priority queue for large fpga-based discrete event simulations of molecular dynamics

Author keywords

[No Author keywords available]

Indexed keywords

DISCRETE EVENTS; MOLECULAR DYNAMICS SIMULATIONS; OFF-CHIP MEMORIES; ORDERS OF MAGNITUDES; PRIORITY QUEUES; SPEED-UPS; STANDARD HARDWARES; TIME STEPS;

EID: 60349089684     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FCCM.2008.49     Document Type: Conference Paper
Times cited : (7)

References (23)
  • 1
    • 34147177681 scopus 로고    scopus 로고
    • Using FPGA devices to accelerate biomolecular simulations
    • Alam, S., Agarwal, P., Smith, M., Vetter, J., and Caliga, D. Using FPGA devices to accelerate biomolecular simulations. Computer 40, 3 (2007), 66-73.
    • (2007) Computer , vol.40 , Issue.3 , pp. 66-73
    • Alam, S.1    Agarwal, P.2    Smith, M.3    Vetter, J.4    Caliga, D.5
  • 2
    • 48149091109 scopus 로고    scopus 로고
    • Annapolis Micro Systems, Inc, Annapolis, MD
    • Annapolis Micro Systems, Inc. WILDSTAR II PRO for PCI. Annapolis, MD, 2006.
    • (2006) WILDSTAR II PRO for PCI
  • 4
    • 60349116003 scopus 로고    scopus 로고
    • Master's thesis, Department of Electrical and Computer Engineering, Boston University
    • Dean, T. Parallelizing discrete molecular dynamics simulations. Master's thesis, Department of Electrical and Computer Engineering, Boston University, 2008.
    • (2008) Parallelizing discrete molecular dynamics simulations
    • Dean, T.1
  • 5
    • 23944480351 scopus 로고    scopus 로고
    • Simple but predictive protein models
    • Ding, F., and Dokholyan, N. Simple but predictive protein models. Trends in Biotechnology 3, 9 (2005), 450-455.
    • (2005) Trends in Biotechnology , vol.3 , Issue.9 , pp. 450-455
    • Ding, F.1    Dokholyan, N.2
  • 6
    • 32344442405 scopus 로고    scopus 로고
    • Studies of folding and misfolding using simplified models
    • Dokholyan, N. Studies of folding and misfolding using simplified models. Current Opinion in Structural Biology 16 (2006), 79-85.
    • (2006) Current Opinion in Structural Biology , vol.16 , pp. 79-85
    • Dokholyan, N.1
  • 7
    • 84976676590 scopus 로고    scopus 로고
    • Fujimoto, R. Parallel discrete event simulation. Communications of the ACM 33, l0 (1990), 30-
    • Fujimoto, R. Parallel discrete event simulation. Communications of the ACM 33, l0 (1990), 30-
  • 12
    • 0010570901 scopus 로고
    • Simulating billiards: Serially and in parallel
    • Lubachevsky, B. Simulating billiards: Serially and in parallel. Int. J. Comp. in Sim. 2 (1992), 373-411.
    • (1992) Int. J. Comp. in Sim , vol.2 , pp. 373-411
    • Lubachevsky, B.1
  • 13
    • 0029517641 scopus 로고
    • An empirical assessment of priority queeus in event-driven molecular dynamics simulation
    • Marin, M., and Cordero, P. An empirical assessment of priority queeus in event-driven molecular dynamics simulation. Computer Physics Communications 92 (1995), 214-224.
    • (1995) Computer Physics Communications , vol.92 , pp. 214-224
    • Marin, M.1    Cordero, P.2
  • 14
    • 0344981326 scopus 로고    scopus 로고
    • Event-driven molecular dynamics in parallel
    • Miller, S., and Luding, S. Event-driven molecular dynamics in parallel. Journal of Computational Physics 193, 1 (2004), 306-316.
    • (2004) Journal of Computational Physics , vol.193 , Issue.1 , pp. 306-316
    • Miller, S.1    Luding, S.2
  • 16
    • 0034316208 scopus 로고    scopus 로고
    • Scalable hardware priority queue architectures for high-speed packet switches
    • Moon, S.-W., Rexford, J., and Shin, K. Scalable hardware priority queue architectures for high-speed packet switches. IEEE Transactions on Computers TC-49, 11 (2001), 1215-1227.
    • (2001) IEEE Transactions on Computers , vol.TC-49 , Issue.11 , pp. 1215-1227
    • Moon, S.-W.1    Rexford, J.2    Shin, K.3
  • 17
    • 33846366012 scopus 로고    scopus 로고
    • A complexity 0(1) priority queue for event driven molecular dynamics simulations
    • Paul, G. A complexity 0(1) priority queue for event driven molecular dynamics simulations. Journal of Computational Physics 221 (2007), 615-625.
    • (2007) Journal of Computational Physics , vol.221 , pp. 615-625
    • Paul, G.1
  • 18
    • 0001412006 scopus 로고
    • The event scheduling problem in molecular dynamics simulation
    • Rapaport, D. The event scheduling problem in molecular dynamics simulation. Journal of Computational Physics 34 (1980), 184-201.
    • (1980) Journal of Computational Physics , vol.34 , pp. 184-201
    • Rapaport, D.1
  • 20
    • 34548223233 scopus 로고    scopus 로고
    • Preliminary investigation of advanced electrostatics in molecular dynamics on reconfigurable computers
    • Scrofano, R., and Prasanna, V. Preliminary investigation of advanced electrostatics in molecular dynamics on reconfigurable computers. In Supercomputing (2006).
    • (2006) Supercomputing
    • Scrofano, R.1    Prasanna, V.2
  • 21
    • 33847770470 scopus 로고    scopus 로고
    • Multiscale modeling of nucleosome dynamics
    • Sharma, S., Ding, F., and Dokholyan, N. Multiscale modeling of nucleosome dynamics. Biophysical Journal 92 (2007), 1457-1470.
    • (2007) Biophysical Journal , vol.92 , pp. 1457-1470
    • Sharma, S.1    Ding, F.2    Dokholyan, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.