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Volumn 93, Issue 3, 2009, Pages 261-273

Difference in number of loci of swine leukocyte antigen classical class I genes among haplotypes

Author keywords

Copy number variance; Genomic structure; Immunogenetics; Major histocompatibility complex (MHC); Molecular evolution; Sus scrofa

Indexed keywords

LEUKOCYTE ANTIGEN;

EID: 60049093593     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2008.10.004     Document Type: Article
Times cited : (32)

References (45)
  • 2
    • 0025029143 scopus 로고
    • Evolutionary relationships of class II major-histocompatibility-complex genes in mammals
    • Hughes A.L., and Nei M. Evolutionary relationships of class II major-histocompatibility-complex genes in mammals. Mol. Biol. Evol. 7 (1990) 491-514
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 491-514
    • Hughes, A.L.1    Nei, M.2
  • 3
    • 1542283573 scopus 로고    scopus 로고
    • The DY genes of the cattle MHC: expression and comparative analysis of an unusual class II MHC gene pair
    • Ballingall K.T., Ellis S.A., MacHugh N.D., Archibald S.D., and McKeever D.J. The DY genes of the cattle MHC: expression and comparative analysis of an unusual class II MHC gene pair. Immunogenetics 55 (2004) 748-755
    • (2004) Immunogenetics , vol.55 , pp. 748-755
    • Ballingall, K.T.1    Ellis, S.A.2    MacHugh, N.D.3    Archibald, S.D.4    McKeever, D.J.5
  • 4
    • 0038643459 scopus 로고    scopus 로고
    • Comparative genome organization of human, murine, and feline MHC class II region
    • Yuhki N., Beck T., Stephens R.M., Nishigaki Y., Newmann K., and O'Brien S.J. Comparative genome organization of human, murine, and feline MHC class II region. Genome Res. 13 (2003) 1169-1179
    • (2003) Genome Res. , vol.13 , pp. 1169-1179
    • Yuhki, N.1    Beck, T.2    Stephens, R.M.3    Nishigaki, Y.4    Newmann, K.5    O'Brien, S.J.6
  • 6
    • 0035667937 scopus 로고    scopus 로고
    • Species-specific evolution of MHC class I genes in the higher primates
    • Adams E.J., and Parham P. Species-specific evolution of MHC class I genes in the higher primates. Immunol. Rev. 183 (2001) 41-64
    • (2001) Immunol. Rev. , vol.183 , pp. 41-64
    • Adams, E.J.1    Parham, P.2
  • 7
    • 0025753444 scopus 로고
    • Independent gene duplications, not concerted evolution, explain relationships among class I MHC genes of murine rodents
    • Hughes A.L. Independent gene duplications, not concerted evolution, explain relationships among class I MHC genes of murine rodents. Immunogenetics 33 (1991) 367-373
    • (1991) Immunogenetics , vol.33 , pp. 367-373
    • Hughes, A.L.1
  • 8
    • 29144444503 scopus 로고    scopus 로고
    • Genomic sequence analysis of the 238-kb swine segment with a cluster of TRIM and olfactory receptor genes located, but with no class I genes, at the distal end of the SLA class I region
    • Ando A., Shigenari A., Kulski J.K., Renard C., Chardon P., Shiina T., and Inoko H. Genomic sequence analysis of the 238-kb swine segment with a cluster of TRIM and olfactory receptor genes located, but with no class I genes, at the distal end of the SLA class I region. Immunogenetics 57 (2005) 864-873
    • (2005) Immunogenetics , vol.57 , pp. 864-873
    • Ando, A.1    Shigenari, A.2    Kulski, J.K.3    Renard, C.4    Chardon, P.5    Shiina, T.6    Inoko, H.7
  • 9
    • 0035133144 scopus 로고    scopus 로고
    • Sequence of the swine major histocompatibility complex region containing all non-classical class I genes
    • Chardon P., Rogel-Gaillard C., Cattolico L., Duprat S., Vaiman M., and Renard C. Sequence of the swine major histocompatibility complex region containing all non-classical class I genes. Tissue Antigens 57 (2001) 55-65
    • (2001) Tissue Antigens , vol.57 , pp. 55-65
    • Chardon, P.1    Rogel-Gaillard, C.2    Cattolico, L.3    Duprat, S.4    Vaiman, M.5    Renard, C.6
  • 12
    • 1242269889 scopus 로고    scopus 로고
    • Nucleotide sequencing analysis of the swine 433-kb genomic segment located between the non-classical and classical SLA class I gene clusters
    • Shigenari A., Ando A., Renard C., Chardon P., Shiina T., Kulski J.K., Yasue H., and Inoko H. Nucleotide sequencing analysis of the swine 433-kb genomic segment located between the non-classical and classical SLA class I gene clusters. Immunogenetics 55 (2004) 695-705
    • (2004) Immunogenetics , vol.55 , pp. 695-705
    • Shigenari, A.1    Ando, A.2    Renard, C.3    Chardon, P.4    Shiina, T.5    Kulski, J.K.6    Yasue, H.7    Inoko, H.8
  • 13
    • 0032958416 scopus 로고    scopus 로고
    • The major histocompatibility complex in swine
    • Chardon P., Renard C., and Vaiman M. The major histocompatibility complex in swine. Immunol. Rev. 167 (1999) 179-192
    • (1999) Immunol. Rev. , vol.167 , pp. 179-192
    • Chardon, P.1    Renard, C.2    Vaiman, M.3
  • 15
    • 26844447963 scopus 로고    scopus 로고
    • Development of dense microsatellite markers in the entire SLA region and evaluation of their polymorphisms in porcine breeds
    • Tanaka M., Ando A., Renard C., Chardon P., Domukai M., Okumura N., Awata T., and Uenishi H. Development of dense microsatellite markers in the entire SLA region and evaluation of their polymorphisms in porcine breeds. Immunogenetics 57 (2005) 690-696
    • (2005) Immunogenetics , vol.57 , pp. 690-696
    • Tanaka, M.1    Ando, A.2    Renard, C.3    Chardon, P.4    Domukai, M.5    Okumura, N.6    Awata, T.7    Uenishi, H.8
  • 18
    • 0036181018 scopus 로고    scopus 로고
    • Will the pig solve the transplantation backlog?
    • Cooper D.K., Gollackner B., and Sachs D.H. Will the pig solve the transplantation backlog?. Annu. Rev. Med. 53 (2002) 133-147
    • (2002) Annu. Rev. Med. , vol.53 , pp. 133-147
    • Cooper, D.K.1    Gollackner, B.2    Sachs, D.H.3
  • 19
    • 0033817426 scopus 로고    scopus 로고
    • Prospects for xenotransplantation
    • Logan J.S. Prospects for xenotransplantation. Curr. Opin. Immunol. 12 (2000) 563-568
    • (2000) Curr. Opin. Immunol. , vol.12 , pp. 563-568
    • Logan, J.S.1
  • 20
    • 0031931624 scopus 로고    scopus 로고
    • Xenoantigens and xenoantibodies
    • Cooper D.K. Xenoantigens and xenoantibodies. Xenotransplantation 5 (1998) 6-17
    • (1998) Xenotransplantation , vol.5 , pp. 6-17
    • Cooper, D.K.1
  • 21
    • 0142107389 scopus 로고    scopus 로고
    • The phylogenetic history of the MHC class I gene families in pig, including a fossil gene predating mammalian radiation
    • Renard C., Chardon P., and Vaiman M. The phylogenetic history of the MHC class I gene families in pig, including a fossil gene predating mammalian radiation. J. Mol. Evol. 57 (2003) 420-434
    • (2003) J. Mol. Evol. , vol.57 , pp. 420-434
    • Renard, C.1    Chardon, P.2    Vaiman, M.3
  • 24
    • 0027249595 scopus 로고
    • dbEST - database for "expressed sequence tags"
    • Boguski M.S., Lowe T.M., and Tolstoshev C.M. dbEST - database for "expressed sequence tags". Nat. Genet. 4 (1993) 332-333
    • (1993) Nat. Genet. , vol.4 , pp. 332-333
    • Boguski, M.S.1    Lowe, T.M.2    Tolstoshev, C.M.3
  • 25
    • 33846066202 scopus 로고    scopus 로고
    • PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences
    • Uenishi H., Eguchi-Ogawa T., Shinkai H., Okumura N., Suzuki K., Toki D., Hamasima N., and Awata T. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Nucleic Acids Res. 35 (2007) D650-D653
    • (2007) Nucleic Acids Res. , vol.35
    • Uenishi, H.1    Eguchi-Ogawa, T.2    Shinkai, H.3    Okumura, N.4    Suzuki, K.5    Toki, D.6    Hamasima, N.7    Awata, T.8
  • 26
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • Smit A.F. Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev. 9 (1999) 657-663
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 657-663
    • Smit, A.F.1
  • 27
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: a database and an electronic journal of repetitive elements
    • Jurka J. Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16 (2000) 418-420
    • (2000) Trends Genet. , vol.16 , pp. 418-420
    • Jurka, J.1
  • 28
    • 0029991222 scopus 로고    scopus 로고
    • Tiggers and DNA transposon fossils in the human genome
    • Smit A.F., and Riggs A.D. Tiggers and DNA transposon fossils in the human genome. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 1443-1448
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 1443-1448
    • Smit, A.F.1    Riggs, A.D.2
  • 31
    • 0036032222 scopus 로고    scopus 로고
    • Quod erat faciendum: sequence analysis of the H2-D and H2-Q regions of 129/SvJ mice
    • Kumánovics A., Madan A., Qin S., Rowen L., Hood L., and Fischer Lindahl K. Quod erat faciendum: sequence analysis of the H2-D and H2-Q regions of 129/SvJ mice. Immunogenetics 54 (2002) 479-489
    • (2002) Immunogenetics , vol.54 , pp. 479-489
    • Kumánovics, A.1    Madan, A.2    Qin, S.3    Rowen, L.4    Hood, L.5    Fischer Lindahl, K.6
  • 33
    • 0021150525 scopus 로고
    • Organization and evolution of the class I gene family in the major histocompatibility complex of the C57BL/10 mouse
    • Weiss E.H., Golden L., Fahrner K., Mellor A.L., Devlin J.J., Bullman H., Tiddens H., Bud H., and Flavell R.A. Organization and evolution of the class I gene family in the major histocompatibility complex of the C57BL/10 mouse. Nature 310 (1984) 650-655
    • (1984) Nature , vol.310 , pp. 650-655
    • Weiss, E.H.1    Golden, L.2    Fahrner, K.3    Mellor, A.L.4    Devlin, J.J.5    Bullman, H.6    Tiddens, H.7    Bud, H.8    Flavell, R.A.9
  • 34
    • 0028988470 scopus 로고
    • "Both man and bird and beast": comparative organization of MHC genes
    • Trowsdale J. "Both man and bird and beast": comparative organization of MHC genes. Immunogenetics 41 (1995) 1-17
    • (1995) Immunogenetics , vol.41 , pp. 1-17
    • Trowsdale, J.1
  • 36
    • 0032897989 scopus 로고    scopus 로고
    • Major histocompatibility complex class II polymorphisms in primates
    • Bontrop R.E., Otting N., de Groot N.G., and Doxiadis G.G. Major histocompatibility complex class II polymorphisms in primates. Immunol. Rev. 167 (1999) 339-350
    • (1999) Immunol. Rev. , vol.167 , pp. 339-350
    • Bontrop, R.E.1    Otting, N.2    de Groot, N.G.3    Doxiadis, G.G.4
  • 37
    • 0019726330 scopus 로고
    • Pseudogenes as a paradigm of neutral evolution
    • Li W.H., Gojobori T., and Nei M. Pseudogenes as a paradigm of neutral evolution. Nature 292 (1981) 237-239
    • (1981) Nature , vol.292 , pp. 237-239
    • Li, W.H.1    Gojobori, T.2    Nei, M.3
  • 38
    • 0023663430 scopus 로고
    • T cell tolerance by clonal elimination in the thymus
    • Kappler J.W., Roehm N., and Marrack P. T cell tolerance by clonal elimination in the thymus. Cell 49 (1987) 273-280
    • (1987) Cell , vol.49 , pp. 273-280
    • Kappler, J.W.1    Roehm, N.2    Marrack, P.3
  • 42
    • 17044418897 scopus 로고    scopus 로고
    • Genomic structure of eight porcine chemokine receptors and intergene sharing of an exon between CCR1 and XCR1
    • Shinkai H., Morozumi T., Toki D., Eguchi-Ogawa T., Muneta Y., Awata T., and Uenishi H. Genomic structure of eight porcine chemokine receptors and intergene sharing of an exon between CCR1 and XCR1. Gene 349 (2005) 55-66
    • (2005) Gene , vol.349 , pp. 55-66
    • Shinkai, H.1    Morozumi, T.2    Toki, D.3    Eguchi-Ogawa, T.4    Muneta, Y.5    Awata, T.6    Uenishi, H.7
  • 43
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences
    • Tatusova T.A., and Madden T.L. BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174 (1999) 247-250
    • (1999) FEMS Microbiol. Lett. , vol.174 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 44
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 45
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.