Pseudomonas savastanoi pv. savastanoi contains two iaaL paralogs, one of which exhibits a variable number of a trinucleotide (TAC) tandem repeat

Applied and Environmental Microbiology

Volumn 75, Issue 4, 2009, Pages 1030-1035

  Matas, Isabel M ^a   Pérez Martínez, Isabel ^a,d   Quesada, José M ^b   Rodríguez Herva, José J ^c,e   Penyalver, Ramón ^b   Ramos, Cayo ^a  

^a Department of Clinical Pharmacology   (Spain)

^b INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^c CSIC   (Spain)

^d UNIVERSITY OF LAUSANNE   (Switzerland)

^e UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CAPILLARY ELECTROPHORESIS ANALYSIS; COMPARATIVE ANALYSIS; DNA FRAGMENTS; NUCLEOTIDE SEQUENCES; PARALOG; PARALOGS; PSEUDOMONAS SYRINGAE; RESTRICTION FRAGMENT LENGTH POLYMORPHISMS; REVERSE TRANSCRIPTASE; TANDEM REPEATS; VARIABLE NUMBERS;

CAPILLARY ELECTROPHORESIS; COSMIC RAYS; ELECTROPHORESIS; NUCLEIC ACIDS; ORGANIC ACIDS; RNA;

NUCLEOTIDES;

BACTERIUM; CHROMOSOME; COMPARATIVE STUDY; ELECTROKINESIS; FRUIT; HERB; POLYMERASE CHAIN REACTION;

BACTERIAL PROTEINS; DNA FINGERPRINTING; DNA, BACTERIAL; GENOTYPE; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; PSEUDOMONAS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TANDEM REPEAT SEQUENCES;

PSEUDOMONAS SAVASTANOI; PSEUDOMONAS SYRINGAE PV. TOMATO;

EID: 59949104071     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01572-08     Document Type: Article

References (49)

1. Akiyoshi, D. E., D. A. Regier, and M. P. Gordon. 1987. Cytokinin production by Agrobacterium and Pseudomonas spp. J. Bacteriol. 169:4242-4248.
2. Bertolini, E., R. Penyalver, A. García, A. Olmos, J. M. Quesada, M. Cambra, and M. M. López. 2003. Highly sensitive detection of Pseudomonas savastanoi pv. savastanoi in asymptomatic olive plants by nested-PCR in a single closed tube. J. Microbiol. Methods 52:261-266.
3. Bichara, M., J. Wagner, and I. B. Lambert. 2006. Mechanisms of tandem repeat instability in bacteria. Mutat. Res. 598:144-163.
4. Buell, C. R., V. Joardar, M. Lindeberg, J. Selengut, I. T. Paulsen, M. L. Gwinn, R. J. Dodson, R. T. Deboy, A. S. Durkin, J. F. Kolonay, R. Madupu, S. Daugherty, L. Brinkac, M. J. Beanan, D. H. Haft, W. C. Nelson, T. Davidsen, N. Zafar, L. Zhou, J. Liu, Q. Yuan, H. Khouri, N. Fedorova, B. Tran, D. Russell, K. Berry, T. Utterback, S. E. Van-Aken, T. V. Feldblyum, M. D'Ascenzo, W. L. Deng, A. R. Ramos, J. R. Alfano, S. Cartinhour, A. K. Chatterjee, T. P. Delaney, S. G. Lazarowitz, G. B. Martin, D. J. Schneider, X. Tang, C. L. Bender, O. White, C. M. Fraser, and A. Collmer. 2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc. Natl. Acad. Sci. USA 100:10181-10186.
5. Caponero, A., A. M. Contesini, and N. S. Iacobellis. 1995. Population diversity of Pseudomonas syringae subsp. savastanoi on olive and oleander. Plant Pathol. 44:848-855.
6. Castillo, T., J. L. Ramos, J. J. Rodríguez-Herva, T. Fuhrer, U. Sauer, and E. Duque. 2007. Convergent peripheral pathways catalyze initial glucose catabolism in Pseudomonas putida: genomic and flux analysis. J. Bacteriol. 189:5142-5152.
7. Comai, L., and T. Kosuge. 1980. Involvement of plasmid deoxyribonucleic acid in indoleacetic acid synthesis in Pseudomonas savastanoi. J. Bacteriol. 143:950-957.
8. Comai, L., G. Surico, and T. Kosuge. 1982. Relation of plasmid DNA to indoleacetic-acid production in different strains of Pseudomonas syringae pv. savastanoi. J. Gen. Microbiol. 128:2157-2163.
9. Cuppels, D. A. 1986. Genetation and caracterization of Tn5 insertion mutations in Pseudomonas syringae pv. tomato. Appl. Environ. Microbiol. 51:323-327.
10. Fett, W. F., S. F. Osman, and M. F. Dunn. 1987. Auxin production by plant-pathogenic pseudomonads and xanthomonads. Appl. Environ. Microbiol. 53:1839-1845.
11. Field, D., and C. Wills. 1996. Long, polymorphic microsatellites in simple organisms. Proc. R. Soc. Lond. 263:209-215.
12. Gaffney, T. D., O. da Costa e Silva, T. Yamada, and T. Kosuge. 1990. Indoleacetic acid operon of Pseudomonas syringae subsp. savastanoi: transcription analysis and promoter identification. J. Bacteriol. 172:5593-5601.
13. Gardan, L., C. Bollet, M. Abughorrah, F. Grimont, and P. A. D. Grimont. 1992. DNA relatedness among the pathovar strains of Pseudomonas syringae subsp. savastanoi Janse (1982) and proposal of Pseudomonas savastanoi sp. nov. Int. J. Syst. Bacteriol. 42:606-612.
14. Glass, N. L., and T. Kosuge. 1986. Cloning of the gene for indoleacetic acid-lysine synthetase from Pseudomonas savastanoi subsp. savastanoi. J. Bacteriol. 166:598-603.
15. Glass, N. L., and T. Kosuge. 1988. Role of indoleacetic acid lysine synthetase in regulation of indoleacetic-acid pool size and virulence of Pseudomonas syringae subsp. savastanoi. J. Bacteriol. 170:2367-2373.
16. Glickmann, E., L. Gardan, S. Jacquet, S. Hussain, M. Elasri, A. Petit, and Y. Dessaux. 1998. Auxin production is a common feature of most pathovars of Pseudomonas syringae. Mol. Plant-Microbe Interact. 11:156-162.
17. Hancock, J. M. 1996. Simple sequences and the expanding genome. Bioessays 18:421-425.
18. Iacobellis, N. S., A. Sisto, and G. Surico. 1993. Occurrence of unusual strains of Pseudomonas syringae subsp. savastanoi on olive in central Italy. Bull. OEPP 23:429-435.
19. Iacobellis, N. S. 2001. Olive knot, p. 713-715. In O. C. Maloy and T. D. Murray (ed.), Encyclopedia of plant pathology. John Wiley and Sons, New York, NY.
20. Jock, S., T. Jacob, W. S. Kim, M. Hildebrand, H. P. Vosberg, and K. Geider. 2003. Instability of short-sequence DNA repeats of pear pathogenic Erwinia strains from Japan and Erwinia amylovora fruit tree and raspberry strains. Mol. Genet. Genom. 268:739-749.
21. King, E. O., M. K. Ward, and D. E. Raney. 1954. Two single media for the demonstration of pyocyanin and fluorescin. J. Lab. Clin. Med. 44:301-307.
22. Lelliot, R. A., E. Billing, and A. C. Hayward. 1966. A determinative scheme for fluorescent plant pathogenic bacteria. J. Appl. Bacteriol. 29:470-478.
23. Li, Y. C., A. B. Korol, T. Fahima, and E. Nevo. 2004. Microsatellites within genes: structure, function, and evolution. Mol. Biol. Evol. 21:991-1007.
24. Ma, Z. H., J. J. Smith, Y. Z. Zhao, R. W. Jackson, D. L. Arnold, J. Murillo, and G. W. Sundin. 2007. Phylogenetic analysis of the pPT23A plasmid family of Pseudomonas syringae. Appl. Environ. Microbiol. 73:1287-1295.
25. Meyer, J. M., and M. A. Abdallah. 1978. The fluorescent pigment of Pseudomonas fluorescens: biosynthesis, purification and physiochemical properties. J. Gen. Microbiol. 107:319-328.
26. Miller, J. H. (ed.). 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
27. Moxon, R., C. Bayliss, and D. Hood. 2006. Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation. Annu. Rev. Genet. 40:307-333.
28. Patten, C. L., and B. R. Glick. 1996. Bacterial biosynthesis of indole-3-acetic acid. Can. J. Microbiol. 42:207-220.
29. Penyalver, R., A. García, A. Ferrer, E. Bertolini, and M. M. López. 2000. Detection of Pseudomonas savastanoi pv. savastanoi in olive plants by enrichment and PCR. Appl. Environ. Microbiol. 66:2673-2677.
30. Penyalver, R., A. García, A. Ferrer, E. Bertolini, J. M. Quesada, C. I. Salcedo, J. Piquer, J. Pérez-Panadés, E. A. Carbonell, C. del Río, J. M. Caballero, and M. M. López. 2006. Factors affecting Pseudomonas savastanoi pv. savastanoi plant inoculations and its use for evaluation of olive cultivar susceptibility. Phytopathology 96:313-319.
31. Pérez-Martínez, I., L. Rodríguez-Moreno, I. M. Matas, and C. Ramos. 2007. Strain selection and improvement of gene transfer for genetic manipulation of Pseudomonas savastanoi isolated from olive knots. Res. Microbiol. 158:60-69.
32. Pérez-Martínez, I., Y. Zhao, J. Murillo, G. W. Sundin, and C. Ramos. 2008. Global genomic analysis of Pseudomonas savastanoi pv. savastanoi plasmids. J. Bacteriol. 190:625-635.
33. Powell, G. K., and R. O. Morris. 1986. Nucleotide sequence and expression of a Pseudomonas savastanoi cytokinin biosynthetic gene - homology with Agrobacterium tumefaciens tmr and tzs loci. Nucleic Acids Res. 14:2555-2565.
34. Quesada, J. M., A. García, E. Bertolini, M. M. López, and R. Penyalver. 2007. Recovery of Pseudomonas savastanoi pv. savastanoi from symptomless shoots of naturally infected olive trees. Int. Microbiol. 10:77-84.
35. Quesada, J. M., I. Pérez-Martínez, C. Ramos, M. M. López, and R. Penyalver. 2008. IS53: an insertion element for molecular typing of Pseudomonas savastanoi pv. savastanoi. Res. Microbiol. 159:207-215.
36. Rico, A., R. López, C. Asensio, M. Aizpún, S. Asensio, C. Manzanera, and J. Murillo. 2003. Nontoxigenic strains of P. syringae pv. phaseolicola are a main cause of halo blight of beans in Spain and escape current detection methods. Phytopathology 93:1553-1559.
37. Roberto, F. F., H. Klee, F. White, R. Nordeen, and T. Kosuge. 1990. Expression and fine structure of the gene encoding N-indole-3- acetyl-L-lysine synthetase from Pseudomonas savastanoi. Proc. Natl. Acad. Sci. USA 87:5797-5801.
38. Rodríguez-Moreno, L., A. Barceló-Muñoz, and C. Ramos. 2008. In vitro analysis of the interaction of Pseudomonas savastanoi pvs. Phytopathology 98:815-822.
39. Ruppitsch, W., A. Stöger, and M. Keck. 2004. Stability of short sequence repeats and their application for the characterization of Erwinia amylovora strains. FEMS Microbiol. Lett. 234:1-8.
40. Sambrook, J., and D. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
41. Schroth, M. N., D. Hildebra, and H. J. Oreilly. 1968. Off-flavor of olives from trees with olive knot tumors. Phytopathology 58:524-529.
42. Schroth, M. N., J. W. Osgood, and T. D. Miller. 1973. Quantitative assessment of effect of olive knot disease on olive yield and quality. Phytopathology 63:1064-1065.
43. Sisto, A., M. G. Cipriani, and M. Morea. 2004. Knot formation caused by Pseudomonas syringae subsp. savastanoi on olive plants is hrp-dependent. Phytopathology 94:484-489.
44. Sisto, A., M. Morea, F. Zaccaro, G. Palumbo, and N. S. Iacobellis. 1999. Isolation and characterization of Pseudomonas syringae subsp. savastanoi mutants defective in hypersensitive response elicitation and pathogenicity. J. Phytopathol. 147:321-330.
45. Surico, G., N. S. Iacobellis, and A. Sisto. 1985. Studies on the role of indole-3-acetic acid and cytokinins in the formation of knots on olive and oleander plants by Pseudomonas syringae pv. savastanoi. Physiol. Plant Pathol. 26:309-320.
46. Vivian, A., and J. Mansfield. 1993. A proposal for a uniform genetic nomenclature for avirulence genes in phytopathogenic pseudomonads. Mol. Plant-Microbe Interact. 6:9-10.
47. Yamamoto, S., H. Kasai, D. L. Arnold, R. W. Jackson, A. Vivian, and S. Harayama. 2000. Phylogeny of the genus Pseudomonas: intragenic structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146:2385-2394.
48. Young, J. M. 2004. Olive knot and its pathogen. Australas. Plant Pathol. 33:33-39.
49. Zhao, Y., A. K. Hull, N. R. Gupta, K. A. Goss, J. Alonso, J. R. Ecker, J. C. Normanly, and J. L. Celenza. 2002. Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev. 16:3100-3112.