메뉴 건너뛰기




Volumn 37, Issue 1, 2009, Pages 58-64

SulfoSYS (Sulfolobus Systems Biology): Towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation

(21)  Albers, Sonja Verena a   Birkeland, Nils Kåre b   Driessen, Arnold J M c   Gertig, Susanne d   Haferkamp, Patrick e   Klenk, Hans Peter f   Kouril, Theresa e   Manica, Andrea g   Pham, Trong K h   Ruoff, Peter i   Schleper, Christa b,g   Schomburg, Dietmar d   Sharkey, Kieran J j   Siebers, Bettina e   Sierocinski, Pawel e,k   Steuer, Ralf j   van der Oost, John k   Westerhoff, Hans V j,l   Wieloch, Patricia c   Wright, Phillip C h   more..


Author keywords

Central carbohydrate metabolism; Crenarchaeon; Silicon cell model; Sulfolobus solfataricus; Systems biology; Temperature variation

Indexed keywords

2 KETO 3 DEOXY (6 PHOSPHO)GLUCONATE; 2 OXO 3 DEOXYGLUCONIC ACID; GLUCONIC ACID; GLUCOSE DEHYDROGENASE; GLYCERALDEHYDE 3 PHOSPHATE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; UNCLASSIFIED DRUG;

EID: 59749085508     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST0370058     Document Type: Article
Times cited : (26)

References (33)
  • 1
    • 67649133699 scopus 로고    scopus 로고
    • Alberghina, L. and Westerhoff, H.V. (eds) (2005) Systems Biology: Definitions and Perspectives (Topics in Current Genetics 13), Springer, Berlin
    • Alberghina, L. and Westerhoff, H.V. (eds) (2005) Systems Biology: Definitions and Perspectives (Topics in Current Genetics Vol, 13), Springer, Berlin
  • 4
    • 0015989446 scopus 로고
    • A linear steady-state treatment of enzymatic chains: General properties, control and effector strength
    • Heinrich, R. and Rapoport, T.A. (1974) A linear steady-state treatment of enzymatic chains: general properties, control and effector strength. Eur. J. Biochem. 42, 89-95
    • (1974) Eur. J. Biochem , vol.42 , pp. 89-95
    • Heinrich, R.1    Rapoport, T.A.2
  • 5
    • 0021075427 scopus 로고
    • Control of gluconeogenesis in rat liver cells. I. Kinetics of the individual enzymes and the effect of glucagon
    • Groen, A.K., Vervoorn, C.R., Van der Meer, R. and Tager, J.M. (1983) Control of gluconeogenesis in rat liver cells. I. Kinetics of the individual enzymes and the effect of glucagon. J. Biol. Chem. 258, 14346-14353
    • (1983) J. Biol. Chem , vol.258 , pp. 14346-14353
    • Groen, A.K.1    Vervoorn, C.R.2    Van der Meer, R.3    Tager, J.M.4
  • 7
    • 27844507018 scopus 로고    scopus 로고
    • Unusual pathways and enzymes of central carbohydrate metabolism in Archaea
    • Siebers, B. and Schönheit, P. (2005) Unusual pathways and enzymes of central carbohydrate metabolism in Archaea. Curr. Opin. Microbiol. 8, 695-705
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 695-705
    • Siebers, B.1    Schönheit, P.2
  • 8
    • 33846839325 scopus 로고    scopus 로고
    • Temperature compensation through systems biology
    • Ruoff, P., Zakhartsev, M. and Westerhoff, H.V. (2007) Temperature compensation through systems biology. FEBS J. 274, 940-950
    • (2007) FEBS J , vol.274 , pp. 940-950
    • Ruoff, P.1    Zakhartsev, M.2    Westerhoff, H.V.3
  • 9
    • 4544344218 scopus 로고    scopus 로고
    • Web-based kinetic modelling using JWS Online
    • Olivier, B.G. and Snoep, J.L. (2004) Web-based kinetic modelling using JWS Online. Bioinformatics 20, 2143-2144
    • (2004) Bioinformatics , vol.20 , pp. 2143-2144
    • Olivier, B.G.1    Snoep, J.L.2
  • 10
    • 0018928663 scopus 로고
    • The Sulfolobus-"Caldariella" group: Taxonomy on the basis of the structure of DNA-dependent RNA polymerases
    • Zillig, W., Stetter, K.O., Wunderl, S., Schulz, W., Priess, H. and Scholz, I. (1980) The Sulfolobus-"Caldariella" group: taxonomy on the basis of the structure of DNA-dependent RNA polymerases. Arch. Microbiol. 125, 259-269
    • (1980) Arch. Microbiol , vol.125 , pp. 259-269
    • Zillig, W.1    Stetter, K.O.2    Wunderl, S.3    Schulz, W.4    Priess, H.5    Scholz, I.6
  • 11
    • 0024351039 scopus 로고    scopus 로고
    • Phenotypic characterization of the archaebacterial genus Sulfolobus: Comparison of five wild-type strains
    • Grogan, D.W. (1998) Phenotypic characterization of the archaebacterial genus Sulfolobus: comparison of five wild-type strains. J. Bacteriol. 171, 6710-6719
    • (1998) J. Bacteriol , vol.171 , pp. 6710-6719
    • Grogan, D.W.1
  • 13
    • 33645062395 scopus 로고    scopus 로고
    • Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis
    • Snijders, A.P.L., Walther, J., Peter, S., Kinnman, I., de Vos, M.G.J., van de Werken, H.J.G., Brouns, S.J.J., van der Oost, J. and Wright, P.C. (2006) Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis. Proteomics 6, 1518-1529
    • (2006) Proteomics , vol.6 , pp. 1518-1529
    • Snijders, A.P.L.1    Walther, J.2    Peter, S.3    Kinnman, I.4    de Vos, M.G.J.5    van de Werken, H.J.G.6    Brouns, S.J.J.7    van der Oost, J.8    Wright, P.C.9
  • 14
    • 35748955052 scopus 로고    scopus 로고
    • The glycolytic pathways of Archaea: Evolution by tinkering
    • 1st edn, Garrett, R.A. and Klenk, H.-P, eds, pp, Blackwell Publishing, Oxford
    • van der Oost, J. and Siebers, B. (2007) The glycolytic pathways of Archaea: evolution by tinkering. In Archaea: Evolution, Physiology and Molecular Biology (1st edn) (Garrett, R.A. and Klenk, H.-P., eds), pp. 247-260, Blackwell Publishing, Oxford
    • (2007) Archaea: Evolution, Physiology and Molecular Biology , pp. 247-260
    • van der Oost, J.1    Siebers, B.2
  • 16
    • 1242314737 scopus 로고    scopus 로고
    • Erratum (2004) Biochem. J. 377, 819-822
    • Erratum (2004) Biochem. J. 377, 819-822
  • 17
    • 0037226536 scopus 로고    scopus 로고
    • Targeted disruption of the a-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Worthington, P., Hoang, V., Perez-Pomares, F. and Blum, P. (2003) Targeted disruption of the a-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataricus. J. Bacteriol. 185, 482-488
    • (2003) J. Bacteriol , vol.185 , pp. 482-488
    • Worthington, P.1    Hoang, V.2    Perez-Pomares, F.3    Blum, P.4
  • 18
    • 0347285395 scopus 로고    scopus 로고
    • Occurence and characterization of mercury resistance in the hyperthermophilic archaeon Sulfolobus solfataricus by use of gene disruption
    • Schelert, J., Dixit, V. Hoang, V. Simbahan, J., Drozda, M. and Blum, P. (2004) Occurence and characterization of mercury resistance in the hyperthermophilic archaeon Sulfolobus solfataricus by use of gene disruption. J. Bacteriol. 186, 427-437
    • (2004) J. Bacteriol , vol.186 , pp. 427-437
    • Schelert, J.1    Dixit, V.2    Hoang, V.3    Simbahan, J.4    Drozda, M.5    Blum, P.6
  • 19
    • 39449138872 scopus 로고    scopus 로고
    • Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome
    • Albers, S.V. and Driessen, A.J.M. (2007) Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome. Archaea 2, 145-149
    • (2007) Archaea , vol.2 , pp. 145-149
    • Albers, S.V.1    Driessen, A.J.M.2
  • 20
    • 0038460077 scopus 로고    scopus 로고
    • A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector
    • Jonuscheit, M., Martusewitsch, E., Stedman, K.M. and Schleper, C. (2003) A reporter gene system for the hyperthermophilic archaeon Sulfolobus solfataricus based on a selectable and integrative shuttle vector. Mol. Microbiol. 48, 1241-1252
    • (2003) Mol. Microbiol , vol.48 , pp. 1241-1252
    • Jonuscheit, M.1    Martusewitsch, E.2    Stedman, K.M.3    Schleper, C.4
  • 22
    • 25144485326 scopus 로고    scopus 로고
    • The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic archaea: A re-evaluation
    • Ahmed, H., Ettema, T.J., Tjaden, B., Geerling, A.C., van der Oost, J. and Siebers, B. (2005) The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic archaea: a re-evaluation. Biochem. J. 390, 529-540
    • (2005) Biochem. J , vol.390 , pp. 529-540
    • Ahmed, H.1    Ettema, T.J.2    Tjaden, B.3    Geerling, A.C.4    van der Oost, J.5    Siebers, B.6
  • 23
    • 0141483333 scopus 로고    scopus 로고
    • Metabolic pathway promiscuity in the archaeon Sulfolobus solfataricus revealed by studies on glucose dehydrogenase and 2-keto-3-deoxygluconate aldolase
    • Lamble, H.J., Heyer, N.I., Bull, S.D., Hough, D.W and Danson, M. (2003) Metabolic pathway promiscuity in the archaeon Sulfolobus solfataricus revealed by studies on glucose dehydrogenase and 2-keto-3-deoxygluconate aldolase. J. Biol. Chem. 278, 34066-34072
    • (2003) J. Biol. Chem , vol.278 , pp. 34066-34072
    • Lamble, H.J.1    Heyer, N.I.2    Bull, S.D.3    Hough, D.W.4    Danson, M.5
  • 24
    • 28844468051 scopus 로고    scopus 로고
    • Promiscuity in the part-phosphorylative Entner-Doudoroff pathway of the archaeon Sulfolobus solfataricus
    • Lamble, H.J., Theodossis, A., Milburn, C.C., Taylor, G.L., Bull, S.D., Hough, D.W and Danson, M. (2005) Promiscuity in the part-phosphorylative Entner-Doudoroff pathway of the archaeon Sulfolobus solfataricus. FEBS Lett. 579, 6865-6869
    • (2005) FEBS Lett , vol.579 , pp. 6865-6869
    • Lamble, H.J.1    Theodossis, A.2    Milburn, C.C.3    Taylor, G.L.4    Bull, S.D.5    Hough, D.W.6    Danson, M.7
  • 25
    • 17144427281 scopus 로고    scopus 로고
    • Identification and characterization of Sulfolobus solfataricus D-gluconate dehydratase: A key enzyme in the non-phosphorylated Entner-Doudoroff pathway
    • Kim, S. and Lee, S.B. (2005) Identification and characterization of Sulfolobus solfataricus D-gluconate dehydratase: a key enzyme in the non-phosphorylated Entner-Doudoroff pathway. Biochem. J. 387, 271-280
    • (2005) Biochem. J , vol.387 , pp. 271-280
    • Kim, S.1    Lee, S.B.2
  • 26
    • 33646356744 scopus 로고    scopus 로고
    • Catalytic promiscuity in dihydroxy-acid dehydratase from the thermoacidophilic archaeon Sulfolobus solfataricus
    • Kim, S. and Lee, S.B. (2006) Catalytic promiscuity in dihydroxy-acid dehydratase from the thermoacidophilic archaeon Sulfolobus solfataricus. J. Biochem. 139, 591-596
    • (2006) J. Biochem , vol.139 , pp. 591-596
    • Kim, S.1    Lee, S.B.2
  • 27
    • 33745488625 scopus 로고    scopus 로고
    • Characterization of Sulfolobus solfataricus 2-keto-3-deoxy-D-gluconate kinase in the modified Entner-Doudoroff pathway
    • Kim, S. and Lee, S.B. (2006) Characterization of Sulfolobus solfataricus 2-keto-3-deoxy-D-gluconate kinase in the modified Entner-Doudoroff pathway. Biosci. Biotechnol. Biochem. 70, 1308-1316
    • (2006) Biosci. Biotechnol. Biochem , vol.70 , pp. 1308-1316
    • Kim, S.1    Lee, S.B.2
  • 28
    • 38049000397 scopus 로고    scopus 로고
    • The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: A key enzyme of the semi-phosphorylative branch of the Entner-Doudoroff pathway
    • Ettema, T.J.G., Ahmed, H., Geerling, A.C.M., van der Oost, J. and Siebers, B. (2008) The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: a key enzyme of the semi-phosphorylative branch of the Entner-Doudoroff pathway. Extremophiles 12, 75-88
    • (2008) Extremophiles , vol.12 , pp. 75-88
    • Ettema, T.J.G.1    Ahmed, H.2    Geerling, A.C.M.3    van der Oost, J.4    Siebers, B.5
  • 29
    • 40449104806 scopus 로고    scopus 로고
    • DNA microarray analysis of the central carbohydrate metabolism: Glycolytic/gluconeogenic carbon switch in the hyperthermophilic Crenarchaeum Thermoproteus tenax
    • Zaparty, M., Zaigler, A., Stamme, C., Soppa, J. and Hensel R., Siebers B. (2008) DNA microarray analysis of the central carbohydrate metabolism: glycolytic/gluconeogenic carbon switch in the hyperthermophilic Crenarchaeum Thermoproteus tenax. J. Bacteriol. 190, 2231-2238
    • (2008) J. Bacteriol , vol.190 , pp. 2231-2238
    • Zaparty, M.1    Zaigler, A.2    Stamme, C.3    Soppa, J.4    Hensel, R.5    Siebers, B.6
  • 30
    • 49749100770 scopus 로고    scopus 로고
    • The central carbohydrate metabolism of the hyperthermophilic crenarchaeote Thermoproteus tenax: Pathways and insights into their regulation
    • Zaparty, M., Tjaden, B., Hensel, R. and Siebers, B. (2008) The central carbohydrate metabolism of the hyperthermophilic crenarchaeote Thermoproteus tenax: pathways and insights into their regulation. Arch. Microbiol. 190, 231-245
    • (2008) Arch. Microbiol , vol.190 , pp. 231-245
    • Zaparty, M.1    Tjaden, B.2    Hensel, R.3    Siebers, B.4
  • 31
    • 2342468053 scopus 로고    scopus 로고
    • Embden-Meyerhof-Parnas and Entner-Doudoroff pathways in Thermoproteus tenax: Metabolic parallelism or specific adaptation?
    • Ahmed, H., Tjaden, B., Hensel, R. and Siebers, B. (2004) Embden-Meyerhof-Parnas and Entner-Doudoroff pathways in Thermoproteus tenax: metabolic parallelism or specific adaptation? Biochem. Soc. Trans. 32, 2-4
    • (2004) Biochem. Soc. Trans , vol.32 , pp. 2-4
    • Ahmed, H.1    Tjaden, B.2    Hensel, R.3    Siebers, B.4
  • 32
    • 0031594123 scopus 로고    scopus 로고
    • Archaeal phosphoproteins. Identification of a hexosephosphate mutase and the α-subunit of succinyl-CoA synthetase in the extreme acidothermophile Sulfolobus solfataricus
    • Solow, B., Bichoff, K.M., Zylka, M.J. and Kennelly, P.J. (1998) Archaeal phosphoproteins. Identification of a hexosephosphate mutase and the α-subunit of succinyl-CoA synthetase in the extreme acidothermophile Sulfolobus solfataricus. Protein Sci. 7, 105-111
    • (1998) Protein Sci , vol.7 , pp. 105-111
    • Solow, B.1    Bichoff, K.M.2    Zylka, M.J.3    Kennelly, P.J.4
  • 33
    • 20444485358 scopus 로고    scopus 로고
    • A phosphohexomutase from the Archaeon Sulfolobus solfataricus is covalently modified by phosphorylation on serine
    • Ray, W.K., Keith, S.M., DeSantis, A.M., Hunt, J.P., Larson, T.J., Helm, R.F. and Kennelly, P.J. (2005) A phosphohexomutase from the Archaeon Sulfolobus solfataricus is covalently modified by phosphorylation on serine. J. Bacteriol. 187, 4270-4275
    • (2005) J. Bacteriol , vol.187 , pp. 4270-4275
    • Ray, W.K.1    Keith, S.M.2    DeSantis, A.M.3    Hunt, J.P.4    Larson, T.J.5    Helm, R.F.6    Kennelly, P.J.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.