메뉴 건너뛰기




Volumn 63, Issue 3, 2009, Pages 261-267

Molecular analysis of diversity within the genus Pseudomonas in the lungs of cystic fibrosis patients

Author keywords

16S 23S rRNA ITS1; Cystic Fibrosis; Pseudomonas genus; T RFLP profiling

Indexed keywords

RIBOSOME RNA;

EID: 59649106110     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2008.11.011     Document Type: Article
Times cited : (8)

References (35)
  • 2
    • 0032974993 scopus 로고    scopus 로고
    • Diversity of free-living and attached bacteria in off-shore Western Mediterranean waters as depicted by 16S rDNA analysis
    • Acinas A.I., Anton J., and Rodrigez-Valera F. Diversity of free-living and attached bacteria in off-shore Western Mediterranean waters as depicted by 16S rDNA analysis. Appl. Environ. Microbiol. 65 (1999) 514-522
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 514-522
    • Acinas, A.I.1    Anton, J.2    Rodrigez-Valera, F.3
  • 3
    • 33845640956 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa and Pseudomonas putida outbreak associated with contaminated water outlets in an oncohaematology paediatric unit
    • Aumeran C., Paillard C., Robin F., Kanold J., Baud O., Bonnet R., Souweine B., and Traore O. Pseudomonas aeruginosa and Pseudomonas putida outbreak associated with contaminated water outlets in an oncohaematology paediatric unit. J. Hosp. Infect. 65 (2007) 47-53
    • (2007) J. Hosp. Infect. , vol.65 , pp. 47-53
    • Aumeran, C.1    Paillard, C.2    Robin, F.3    Kanold, J.4    Baud, O.5    Bonnet, R.6    Souweine, B.7    Traore, O.8
  • 4
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman J., and Triplett E.W. Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63 (1997) 2647-2653
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 5
    • 41349094333 scopus 로고    scopus 로고
    • Pseudomonas putida war wound infection in a US Marine: a case report and review of the literature
    • Carpenter R.J., Hartzell J.D., Forsberg J.A., Babel B.S., and Ganesan A. Pseudomonas putida war wound infection in a US Marine: a case report and review of the literature. J. Infect. 56 (2008) 234-240
    • (2008) J. Infect. , vol.56 , pp. 234-240
    • Carpenter, R.J.1    Hartzell, J.D.2    Forsberg, J.A.3    Babel, B.S.4    Ganesan, A.5
  • 6
    • 22844451230 scopus 로고    scopus 로고
    • Rapid molecular diagnosis of lactobacillus bacteremia by terminal restriction fragment length polymorphism analysis of the 16S rRNA gene
    • Christensen J.E., Reynolds C.E., Shukla S.K., and Reed K.D. Rapid molecular diagnosis of lactobacillus bacteremia by terminal restriction fragment length polymorphism analysis of the 16S rRNA gene. Clin. Med. Res. 2 (2008) 37-45
    • (2008) Clin. Med. Res. , vol.2 , pp. 37-45
    • Christensen, J.E.1    Reynolds, C.E.2    Shukla, S.K.3    Reed, K.D.4
  • 8
    • 0037129218 scopus 로고    scopus 로고
    • Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation
    • Drenkard E., and Ausubel F.M. Pseudomonas biofilm formation and antibiotic resistance are linked to phenotypic variation. Nature 416 (2002) 740-743
    • (2002) Nature , vol.416 , pp. 740-743
    • Drenkard, E.1    Ausubel, F.M.2
  • 9
    • 0029814366 scopus 로고    scopus 로고
    • Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia
    • Govan J.R., and Deretic V. Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. Microbiol. Rev. 60 (1996) 539-574
    • (1996) Microbiol. Rev. , vol.60 , pp. 539-574
    • Govan, J.R.1    Deretic, V.2
  • 10
    • 0033867757 scopus 로고    scopus 로고
    • Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species
    • Guasp C., Moore E., Lalucat J., and Bensar A. Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species. Int. J. Syst. Evol. Microbiol. 50 (2000) 1629-1639
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1629-1639
    • Guasp, C.1    Moore, E.2    Lalucat, J.3    Bensar, A.4
  • 13
    • 0035319323 scopus 로고    scopus 로고
    • 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM
    • Kaplan C.W., Astaire J.C., Sanders M.E., Reddy B.S., and Kitts C.L. 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 67 (2001) 1935-1939
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1935-1939
    • Kaplan, C.W.1    Astaire, J.C.2    Sanders, M.E.3    Reddy, B.S.4    Kitts, C.L.5
  • 14
    • 0030446950 scopus 로고    scopus 로고
    • Polymerase chain reaction for the detection of Pseudomonas aeruginosa, Stenotrophomonas maltophilia and Burkholderia cepacia in sputum of patients with cystic fibrosis
    • Karpati F., and Jonasson J. Polymerase chain reaction for the detection of Pseudomonas aeruginosa, Stenotrophomonas maltophilia and Burkholderia cepacia in sputum of patients with cystic fibrosis. Mol. Cell. Probes 10 (1996) 397-403
    • (1996) Mol. Cell. Probes , vol.10 , pp. 397-403
    • Karpati, F.1    Jonasson, J.2
  • 15
    • 0037219570 scopus 로고    scopus 로고
    • Impact of large chromosomal inversions on the adaptation and evolution of Pseudomonas aeruginosa chronically colonizing cystic fibrosis lungs
    • Kresse A.U., Dinesh S.D., Larbig K., and Römling U. Impact of large chromosomal inversions on the adaptation and evolution of Pseudomonas aeruginosa chronically colonizing cystic fibrosis lungs. Mol. Microbiol. 47 (2003) 145-158
    • (2003) Mol. Microbiol. , vol.47 , pp. 145-158
    • Kresse, A.U.1    Dinesh, S.D.2    Larbig, K.3    Römling, U.4
  • 16
    • 0038102859 scopus 로고    scopus 로고
    • Evaluation of a new definition for chronic Pseudomonas aeruginosa infection in cystic fibrosis patients
    • Lee T.W.R., Brownlee K.G., Conway S.P., Denton M., and Littlewood J.M. Evaluation of a new definition for chronic Pseudomonas aeruginosa infection in cystic fibrosis patients. J. Cyst. Fibros. 2 (2003) 29-34
    • (2003) J. Cyst. Fibros. , vol.2 , pp. 29-34
    • Lee, T.W.R.1    Brownlee, K.G.2    Conway, S.P.3    Denton, M.4    Littlewood, J.M.5
  • 17
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphism's of genes encoding 16S rRNA
    • Liu W.T., Marsh T.L., Cheng H., and Forney L.J. Characterization of microbial diversity by determining terminal restriction fragment length polymorphism's of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63 (1997) 4516-4522
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 18
    • 0036670560 scopus 로고    scopus 로고
    • Specific PCR amplification for the genus Pseudomonas targeting the 3′ half of 16S rDNA and the whole 16S-23S rDNA spacer
    • Locatelli L., Tarnawski J., Harmelin A., Rossi P., Aragno M., and Fromon N. Specific PCR amplification for the genus Pseudomonas targeting the 3′ half of 16S rDNA and the whole 16S-23S rDNA spacer. Syst. Appl. Microbiol. 25 (2002) 220-227
    • (2002) Syst. Appl. Microbiol. , vol.25 , pp. 220-227
    • Locatelli, L.1    Tarnawski, J.2    Harmelin, A.3    Rossi, P.4    Aragno, M.5    Fromon, N.6
  • 19
    • 0036225688 scopus 로고    scopus 로고
    • Lung infections associated with cystic fibrosis
    • Lyczak J.B., Cannon C., and Pier G. Lung infections associated with cystic fibrosis. Clin. Microbiol. Rev. 15 (2002) 194-222
    • (2002) Clin. Microbiol. Rev. , vol.15 , pp. 194-222
    • Lyczak, J.B.1    Cannon, C.2    Pier, G.3
  • 20
    • 34347341657 scopus 로고    scopus 로고
    • Native valve endocarditis due to Pseudomonas mendocina in a patient with mental retardation and a review of literature
    • Mert A., Yilmaz M., Ozaras R., Kocak F., and Dagsali S. Native valve endocarditis due to Pseudomonas mendocina in a patient with mental retardation and a review of literature. Scand. J. Infect. Dis. 39 (2007) 615-616
    • (2007) Scand. J. Infect. Dis. , vol.39 , pp. 615-616
    • Mert, A.1    Yilmaz, M.2    Ozaras, R.3    Kocak, F.4    Dagsali, S.5
  • 21
    • 34249088882 scopus 로고    scopus 로고
    • Variability of the 16S-23S rRNA gene internal transcribed spacer in Pseudomonas avellanae strains
    • Natalini E., and Scortichini M. Variability of the 16S-23S rRNA gene internal transcribed spacer in Pseudomonas avellanae strains. FEMS Microbiol. Lett. 271 (2007) 274-280
    • (2007) FEMS Microbiol. Lett. , vol.271 , pp. 274-280
    • Natalini, E.1    Scortichini, M.2
  • 23
    • 3042704477 scopus 로고    scopus 로고
    • Identification of waterborne bacteria by the analysis of 16S-23S rRNA intergenic spacer region
    • Pérez-Luz S., Adela Yanez M., and Catalan V. Identification of waterborne bacteria by the analysis of 16S-23S rRNA intergenic spacer region. J. Appl. Microbiol. 97 (2004) 191-200
    • (2004) J. Appl. Microbiol. , vol.97 , pp. 191-200
    • Pérez-Luz, S.1    Adela Yanez, M.2    Catalan, V.3
  • 24
    • 42149132660 scopus 로고    scopus 로고
    • Recovery of antimicrobial-resistant Pseudomonas aeruginosa from sputa of cystic fibrosis patients by culture on selective media
    • Perry J.D., Laine L., Hughes S., Nicholson A., Galloway A., and Gould F.K. Recovery of antimicrobial-resistant Pseudomonas aeruginosa from sputa of cystic fibrosis patients by culture on selective media. J. Antimicrob. Chemother. 61 (2008) 1057-1061
    • (2008) J. Antimicrob. Chemother. , vol.61 , pp. 1057-1061
    • Perry, J.D.1    Laine, L.2    Hughes, S.3    Nicholson, A.4    Galloway, A.5    Gould, F.K.6
  • 25
    • 0032870843 scopus 로고    scopus 로고
    • Community-acquired Pseudomonas stutzeri vertebral osteomyelitis in a previously healthy patient: case report and review
    • Reisler R.B., and Blumberg H. Community-acquired Pseudomonas stutzeri vertebral osteomyelitis in a previously healthy patient: case report and review. Clin. Infect. Dis. 29 (1999) 667-669
    • (1999) Clin. Infect. Dis. , vol.29 , pp. 667-669
    • Reisler, R.B.1    Blumberg, H.2
  • 26
    • 0036200876 scopus 로고    scopus 로고
    • Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
    • Rocap G., Distel D.L., Waterbury J.B., and Chisholm S.W. Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl. Environ. Microbiol. 68 (2001) 1180-1191
    • (2001) Appl. Environ. Microbiol. , vol.68 , pp. 1180-1191
    • Rocap, G.1    Distel, D.L.2    Waterbury, J.B.3    Chisholm, S.W.4
  • 27
    • 0043025364 scopus 로고    scopus 로고
    • Bacterial diversity in cases of lung infection in cystic fibrosis patients: 16S ribosomal DNA (rDNA) length heterogeneity PCR and 16S rDNA terminal restriction fragment length polymorphism profiling
    • Rogers G.B., Hart C.A., Mason J.R., Hughes M., Walshaw M.J., and Bruce K.D. Bacterial diversity in cases of lung infection in cystic fibrosis patients: 16S ribosomal DNA (rDNA) length heterogeneity PCR and 16S rDNA terminal restriction fragment length polymorphism profiling. J. Clin. Microbiol. 41 (2003) 3548-3558
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 3548-3558
    • Rogers, G.B.1    Hart, C.A.2    Mason, J.R.3    Hughes, M.4    Walshaw, M.J.5    Bruce, K.D.6
  • 28
    • 1642556721 scopus 로고    scopus 로고
    • Infection control in cystic fibrosis
    • Saiman L., and Siegel J. Infection control in cystic fibrosis. Clin. Micro. Rew. 17 (2004) 57-71
    • (2004) Clin. Micro. Rew. , vol.17 , pp. 57-71
    • Saiman, L.1    Siegel, J.2
  • 29
    • 0037281247 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism analysis for human faecal microbiota and its application for analysis of complex bifidobacterial communities
    • Sakamoto M., Hayashi H., and Benno Y. Terminal restriction fragment length polymorphism analysis for human faecal microbiota and its application for analysis of complex bifidobacterial communities. Microbiol. Immunol. 47 (2003) 133-142
    • (2003) Microbiol. Immunol. , vol.47 , pp. 133-142
    • Sakamoto, M.1    Hayashi, H.2    Benno, Y.3
  • 30
    • 26244452974 scopus 로고    scopus 로고
    • Genomovars 11 and 18 of Pseudomonas stutzeri, identified among isolates from soil and marine sediment
    • Sikorski J., Lalucat J., and Wackernagel W. Genomovars 11 and 18 of Pseudomonas stutzeri, identified among isolates from soil and marine sediment. Int. J. Syst. Evol. Microbiol. 55 (2005) 1767-1770
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1767-1770
    • Sikorski, J.1    Lalucat, J.2    Wackernagel, W.3
  • 31
    • 0034752846 scopus 로고    scopus 로고
    • Heterogeneity of Pseudomonas aeruginosa in Brazilian cystic fibrosis patients
    • Silbert S., Barth A.L., and Sader H.S. Heterogeneity of Pseudomonas aeruginosa in Brazilian cystic fibrosis patients. J. Clin. Microbiol. 39 (2001) 3976-3981
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3976-3981
    • Silbert, S.1    Barth, A.L.2    Sader, H.S.3
  • 32
    • 2442610844 scopus 로고    scopus 로고
    • PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients
    • Spilker T., Coenye T., Vandamme P., and Li Puma J. PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients. J. Clin. Microbiol. 42 (2004) 2074-2079
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 2074-2079
    • Spilker, T.1    Coenye, T.2    Vandamme, P.3    Li Puma, J.4
  • 33
    • 0029023142 scopus 로고
    • Oligonucleotide primers designed to differentiate pathogenic pseudomonads on the basis of the sequencing of genes coding for 16S-23S rRNA internal transcribed spacers
    • Tyler S.D., Strathdee K.R., Rozee K.R., and Johnson W.M. Oligonucleotide primers designed to differentiate pathogenic pseudomonads on the basis of the sequencing of genes coding for 16S-23S rRNA internal transcribed spacers. Clin. Diagn. Lab. Immunol. 2 (1995) 448-453
    • (1995) Clin. Diagn. Lab. Immunol. , vol.2 , pp. 448-453
    • Tyler, S.D.1    Strathdee, K.R.2    Rozee, K.R.3    Johnson, W.M.4
  • 34
    • 0033986769 scopus 로고    scopus 로고
    • Comparison of conventional and molecular methods for the detection of bacterial pathogens in sputum samples from cystic fibrosis patients
    • van Belkum A., Renders N., Smith S., Overbeek S.E., and Verbrugh H.A. Comparison of conventional and molecular methods for the detection of bacterial pathogens in sputum samples from cystic fibrosis patients. FEMS Immunol. Med. Microbiol. 27 (2000) 51-57
    • (2000) FEMS Immunol. Med. Microbiol. , vol.27 , pp. 51-57
    • van Belkum, A.1    Renders, N.2    Smith, S.3    Overbeek, S.E.4    Verbrugh, H.A.5
  • 35
    • 23744443828 scopus 로고    scopus 로고
    • Superiority of molecular techniques for identification of gram-negative, oxidase-positive rods, including morphologically nontypical, from patients with cystic fibrosis
    • Wellinghausen N., Köthe J., Wirths B., Sigge A., and Poppert S. Superiority of molecular techniques for identification of gram-negative, oxidase-positive rods, including morphologically nontypical, from patients with cystic fibrosis. J. Clin. Microbiol. 43 (2005) 4070-4075
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 4070-4075
    • Wellinghausen, N.1    Köthe, J.2    Wirths, B.3    Sigge, A.4    Poppert, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.