Structure and dynamics of a DNA-based model system for the study of electron spin-spin interactions

Journal of Inorganic Biochemistry

Volumn 103, Issue 3, 2009, Pages 362-372

  Biczo, Ryan ^a   Hirsh, Donald J ^a  

^a The College of New Jersey   (United States)

Author keywords

Circular dichroism; DNA; Electron paramagnetic resonance; Lanthanides; Spin label

Indexed keywords

DOUBLE STRANDED DNA; DYSPROSIUM; EDETIC ACID; NITROXIDE;

ARTICLE; CHEMICAL STRUCTURE; CIRCULAR DICHROISM; DNA STRUCTURE; DNA SYNTHESIS; ELECTRON SPIN RESONANCE; ULTRAVIOLET SPECTROSCOPY;

CIRCULAR DICHROISM; DNA; DYSPROSIUM; EDETIC ACID; ELECTRON SPIN RESONANCE SPECTROSCOPY; ELECTRONS; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; SPIN LABELS; THYMIDINE;

EID: 59649090385     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2008.11.013     Document Type: Article

References (66)

1. Lakshmi K., and Brudvig G. Curr. Opin. Struct. Biol. 11 (2003) 523-531
2. m Effects vol. 19 (2000), Kluwer Academic/Plenum Publisher, New York 348-378
3. Hirsh D.J., and Brudvig G.W. Nat. Protoc. 2 (2007) 1770-1781
4. Clegg R.M. In: Wang X.F., and Herman B. (Eds). Fluorescence Imaging Spectroscopy and Microscopy. Fluorescence Resonance Energy Transfer (1996), John Wiley & Sons, New York 179-251
5. Keyes R.S., and Bobst A.M. In: Berliner L.J. (Ed). Biological Magnetic Resonance Spin-Labeled Nucleic Acids vol. 14 (1998), Springer, Plenum Press, New York 283-338
6. In: Berliner L.J. (Ed). Biological Magnetic Resonance, Spin Labeling II: Theory and Applications (1979), Academic Press, New York
7. In: Berliner L.J. (Ed). Biological Magnetic Resonance, Spin Labeling vol. 1 (1976), Academic Press, New York
8. Hirsh D.J., Beck W.F., Lynch J.B., Que Jr. L., and Brudvig G.W. J. Am. Chem. Soc. 114 (1992) 7475-7481
9. Koulougliotis D., Hirsh D.J., and Brudvig G.W. J. Am. Chem. Soc. 114 (1992) 8322-8323
10. Hirsh D.J., Beck W.F., Innes J.B., and Brudvig G.W. Biochemistry 31 (1992) 532-541
11. Hirsh D.J., and Brudvig G.W. J. Phys. Chem. 97 (1993) 13216-13222
12. Kulikov A.V., and Likhtenstein G.I. Adv. Mol. Relax. Interact. Processes 10 (1977) 47-79
13. Rakowsky M., More K., Kulikov A., Eaton G., and Eaton S. J. Am. Chem. Soc. 117 (1995) 2049-2057
14. Kisseleva N., Khvorova A., Westhof E., and Schiemann O. RNA 11 (2005) 1-6
15. Schiemann O., Fritscher J., Kisseleva N., Sigurdsson S.T., and Prisner T.F. Chem. Biochem. 4 (2003) 1057-1065
16. Hoogstraten C.G., Grant C.V., Horton T.E., DeRose V.J., and Britt R.D. J. Am. Chem. Soc. 124 (2002) 834-842
17. Hunsicker L.M., and DeRose V.J. J. Inorg. Biochem. 80 (2000) 271-281
18. Horton T.E., Clardy D.R., and DeRose V.J. Biochemistry 37 (1998) 18094-18101
19. Keyes R., Bobst E., Cao Y., and Bobst A. Biophys. J. 72 (1997) 282-290
20. Gannett P.M., Darian E., Powell J., Johnson Il E.M., Mundoma C., Greenbaum N.L., Ramsey C.M., Dalal N.S., and Budil D.E. Nucleic Acids Res. 30 (2002) 5328-5337
21. Qin P.Z., Hideg K., Feigon J., and Hubbell Wayne L. Biochemistry 42 (2003) 6772-6783
22. Hustedt E.J., Kirchner J.J., Spaltenstein A., Hopkins P.B., and Robinson B.H. Biochemistry 34 (1995) 4369-4375
23. Strobel O.K., Kryak D.D., Bobst E.V., and Bobst A.M. Bioconjug. Chem. 2 (1991) 89-95
24. Spaltenstein A., Robinson B.H., and Hopkins P.B. Biochemistry 28 (1989) 9484-9495
25. A.G. Filler, A.M.L. Lever, Nucleic acid amplification using scandium and lanthanum ions, US Patent 5,554,498, Syngenix Limited, Cambridge, GB, USA, 1996.
26. Franklin S.J. Current Opin. Chem. Biol. 5 (2001) 201-208
27. Rammo J., Hettich R., Roigk A., and Schneider H.-J. Chem. Commun. (1996) 105-107
28. Rammo J., and Schneider H.-J. Liebigs Annalen - Recueil (1996) 1757-1767
29. Harris D.A., Tinsley R.A., and Walter N.G. J. Mol. Biol. 341 (2004) 389-403
30. Zhou Y., Bowler B., Lynch K., Eaton S., and Eaton G. Biophys. J. 79 (2000) 1039-1052
31. Burchfield J., Du J., More K., Kundalika M., Eaton S., and Eaton G. Inorg. Chim. Acta 263 (1997) 23-33
32. Konda R., Du J., Eaton S., and Eaton G. Appl. Magn. Reson. 7 (1994) 185-193
33. Du J., Eaton G., and Eaton S. J. Magn. Reson. A 119 (1996) 240-246
34. Seiter M., Budker V., Du J.-L., Eaton G.R., and Eaton S.S. Inorg. Chim. Acta 273 (1998) 354-366
35. Innes J.B., and Brudvig G.W. Biochemistry 28 (1989) 1116-1125
36. Sarna T., Hyde J., and Swartz H. Science 192 (1976) 1132-1134
37. Nunez M.E., Hall D.B., and Barton J.K. Chem. Biol. 6 (1999) 85-97
38. Augustyn K.E., Genereux J.C., and Barton J.K. Angew. Chem. Int. Ed. Engl. 46 (2007) 5731-5733
39. Ho Choi S., Kim B., and Frisbie C.D. Science 320 (2008) 1482-1486
40. Merino E.J., Boal A.K., and Barton J.K. Curr. Opin. Chem. Biol. 12 (2008) 229-237
41. Clever G.H., Kaul C., and Carell T. Angew. Chem. Int. Ed. Engl. 46 (2007) 6226-6236
42. Chen X.J., Schramm J., Tuohy C., Skiff H., Hummel K., Szklarski A.R., Vacirca N., Wolf B.A., and Hirsh D.J. Biophys. Chem. 129 (2007) 148-162
43. Castner Jr. T.G. Phys. Rev. 115 (1959) 1506-1515
44. Portis A.M. Phys. Rev. 91 (1953) 1071-1078
45. Goodman G., and Leigh Jr. J.S. Biochemistry 24 (1985) 2310-2317
46. Knowles P.F., Marsh D., and Rattle H.W.E. Magnetic Resonance of Biomolecules: An Introduction to the Theory and Practice of NMR and ESR in Biological Systems (1976), Wiley-Interscience, London
47. Hsia J.C., and Piette L.H. Arch. Biochem. Biophys. 129 (1969) 296-307
48. Stryer L., and Griffith O.H. Proc. Natl. Acad. Sci. USA 54 (1965) 1785-1791
49. Qin P.Z., Butcher S.E., Feigon J., and Hubbell W.L. Biochemistry 40 (2001) 6929-6936
50. Barnett B.L., and Uchtman V.A. Inorg. Chem. 18 (1979) 2674-2678
51. Nassimbeni L.R., Wright M.R.W., Van Niekerk J.C., and McCallum P.A. Acta Crystallogr. Sect. B: Struct. Crystallogr. Cryst. Chem. B35 (1979) 1341-1345
52. Asso M., Mossoyan J., and Benlian D. Rev. Chim. Miner. 13 (1976) 595-604
53. Weiner S.J., Kollman P.A., Case D.A., Singh U.C., Ghio C., Alagona G., Profeta Jr. S., and Weiner P. J. Am. Chem. Soc. 106 (1984) 765-784
54. Cornell W.D., Cieplak P., Bayly C.I., Gould I.R., Merz Jr. K.M., Ferguson D.M., Spellmeyer D.C., Fox T., Caldwell J.W., and Kollman P.A. J. Am. Chem. Soc. 117 (1995) 5179-5197
55. Marky L.A., and Breslauer K.J. Biopolymers 26 (1987) 1601-1620
56. Chan S.S., Breslauer K.J., Hogan M.E., Kessler D.J., Austin R.H., Ojemann J., Passner J.M., and Wiles N.C. Biochemistry 29 (1990) 6161-6171
57. Chen C.Y., Pheiffer B.H., Zimmerman S.B., and Hanlon S. Biochemistry 22 (1983) 4746-4751
58. Keyes R.S., Bobst E.V., Cao Y.Y., and Bobst A.M. Biophys. J. 72 (1997) 282-290
59. Liang Z., Freed J.H., Keyes R.S., and Bobst A.M. J. Phys. Chem. B 104 (2000) 5372-5381
60. Brittain H.G., Choppin G.R., and Barthelemy P.P. J. Coord. Chem. 26 (1992) 143-153
61. Costa D., Burrows H.D., and da Graca Miguel M. Langmuir 21 (2005) 10492-10496
62. Costa D., Luísa Ramos M., Burrows H.D., José Tapia M., and da Graça Miguel M. Chem. Phys. 352 (2008) 241-248
63. Dreyer G.B., and Dervan P.B. Proc. Natl. Acad. Sci. USA 82 (1985) 968-972
64. Fenton H.J.H. J. Chem. Soc. 65 (1894) 899-910
65. Nriagu J.O. Am. J. Sci. 272 (1972) 476-484
66. Hamor M.J., Hamor T.A., and Hoard J.L. Inorg. Chem. 3 (1964) 34-43