메뉴 건너뛰기




Volumn 25, Issue 3, 2009, Pages 394-400

Evaluating contributions of natural language parsers to protein-protein interaction extraction

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; DATA EXTRACTION; DATA MINING; MEDICAL RESEARCH; NATURAL LANGUAGE PROCESSING; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION;

EID: 59549091756     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn631     Document Type: Article
Times cited : (129)

References (42)
  • 1
    • 80052896774 scopus 로고    scopus 로고
    • A graph kernel for protein-protein interaction extraction
    • Columbus, pp
    • Airola,A. et al. (2008) A graph kernel for protein-protein interaction extraction. In Proceedings of BioNLP, Columbus, pp. 1-9.
    • (2008) Proceedings of BioNLP , pp. 1-9
    • Airola, A.1
  • 2
    • 25844498898 scopus 로고    scopus 로고
    • Intricacies of Collins' parsing model
    • Bikel,D.M. (2004) Intricacies of Collins' parsing model. Comput. Linguist., 30, 479-511.
    • (2004) Comput. Linguist , vol.30 , pp. 479-511
    • Bikel, D.M.1
  • 5
    • 16244423656 scopus 로고    scopus 로고
    • Comparative experiments on learning information extractors for proteins and their interactions
    • Bunescu,R.C. et al. (2005) Comparative experiments on learning information extractors for proteins and their interactions. Artif. Intell. Med., 33, 139-155.
    • (2005) Artif. Intell. Med , vol.33 , pp. 139-155
    • Bunescu, R.C.1
  • 8
    • 33847095048 scopus 로고    scopus 로고
    • Benchmarking natural-language parsers for biological applications using dependency graphs
    • Clegg,A.B. and Shepherd,A.J. (2007) Benchmarking natural-language parsers for biological applications using dependency graphs. BMC Bioinformatics, 8, 24.
    • (2007) BMC Bioinformatics , vol.8 , pp. 24
    • Clegg, A.B.1    Shepherd, A.J.2
  • 12
    • 33847294345 scopus 로고    scopus 로고
    • RelEx - relation extraction using dependency parse trees
    • Fundel,K. et al. (2007) RelEx - relation extraction using dependency parse trees. Bioinformatics, 23, 365-371.
    • (2007) Bioinformatics , vol.23 , pp. 365-371
    • Fundel, K.1
  • 14
    • 59549096633 scopus 로고    scopus 로고
    • Evaluating impact of re-training a lexical disambiguation model on domain adaptation of an HPSG parser
    • Prague
    • Hara,T. et al. (2007) Evaluating impact of re-training a lexical disambiguation model on domain adaptation of an HPSG parser. In Proceedings of the 10th International Conference on Parsing Technology Prague.
    • (2007) Proceedings of the 10th International Conference on Parsing Technology
    • Hara, T.1
  • 15
    • 59549094775 scopus 로고    scopus 로고
    • Hirschman,L. et al, eds, Madrid. Centro Nacional de Investigaciones Oncologicas
    • Hirschman,L. et al. (eds) (2007) Proceeding of Second BioCreative Challenge Evaluation Workshop, Madrid. Centro Nacional de Investigaciones Oncologicas.
    • (2007) Proceeding of Second BioCreative Challenge Evaluation Workshop
  • 19
    • 37549050918 scopus 로고    scopus 로고
    • Kernel approaches for genic interaction extraction
    • Kim,S. et al. (2008) Kernel approaches for genic interaction extraction. Bioinformatics, 24, 118-126.
    • (2008) Bioinformatics , vol.24 , pp. 118-126
    • Kim, S.1
  • 22
    • 34249852033 scopus 로고
    • Building a large annotated corpus of English: The Penn Treebank
    • Marcus,M. et al. (1994) Building a large annotated corpus of English: The Penn Treebank. Comput. Linguist., 19, 313-330.
    • (1994) Comput. Linguist , vol.19 , pp. 313-330
    • Marcus, M.1
  • 23
    • 80053413137 scopus 로고    scopus 로고
    • Comparative parser performance analysis across grammar frameworks through automatic tree conversion using synchronous grammars
    • Manchester
    • Matsuzaki,T. and Tsujii,J. (2008) Comparative parser performance analysis across grammar frameworks through automatic tree conversion using synchronous grammars. In Proceedings of the 22nd International Conference on Computational Linguistics, Manchester.
    • (2008) Proceedings of the 22nd International Conference on Computational Linguistics
    • Matsuzaki, T.1    Tsujii, J.2
  • 25
    • 33747848888 scopus 로고    scopus 로고
    • Extracting protein-protein interaction information from biomedical text with SVM
    • Mitsumori,T. et al. (2006) Extracting protein-protein interaction information from biomedical text with SVM. IEICE Trans. Inf. Syst. E89-D, 2464-2466.
    • (2006) IEICE Trans. Inf. Syst , vol.E89-D , pp. 2464-2466
    • Mitsumori, T.1
  • 26
    • 41549159851 scopus 로고    scopus 로고
    • Feature forest models for probabilistic HPSG parsing
    • Miyao,Y. and Tsujii,J. (2008) Feature forest models for probabilistic HPSG parsing. Comput. Linguist., 34, 35-80.
    • (2008) Comput. Linguist , vol.34 , pp. 35-80
    • Miyao, Y.1    Tsujii, J.2
  • 33
    • 33847608309 scopus 로고    scopus 로고
    • BioInfer: A corpus for information extraction in the biomedical domain
    • Pyysalo,S. et al. (2007a) BioInfer: A corpus for information extraction in the biomedical domain. BMC Bioinformatics, 8, 50.
    • (2007) BMC Bioinformatics , vol.8 , pp. 50
    • Pyysalo, S.1
  • 34
    • 84886762111 scopus 로고    scopus 로고
    • On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA
    • Prague, pp
    • Pyysalo,S. et al. (2007b) On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA. In Proceedings of BioNLP, Prague, pp. 25-32.
    • (2007) Proceedings of BioNLP , pp. 25-32
    • Pyysalo, S.1
  • 40
    • 33749251345 scopus 로고    scopus 로고
    • Developing a robust part-of-speech tagger for biomedical text
    • Volos
    • Tsuruoka,Y. et al. (2005) Developing a robust part-of-speech tagger for biomedical text. In 10th Panhellenic Conference on Informatics, Volos.
    • (2005) 10th Panhellenic Conference on Informatics
    • Tsuruoka, Y.1
  • 42
    • 33947359082 scopus 로고    scopus 로고
    • BioCreAtIvE task 1A: Gene mention finding evaluation
    • Yeh,A. et al. (2005) BioCreAtIvE task 1A: Gene mention finding evaluation. BMC Bioinformatics, 6 (Suppl. 1), S2.
    • (2005) BMC Bioinformatics , vol.6 , Issue.SUPPL. 1
    • Yeh, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.