Improved tools for efficient mapping of fission yeast genes: Identification of microtubule nucleation modifier mod22-1 as an allele of chromatin-remodelling factor gene swr1

Yeast

Volumn 25, Issue 12, 2008, Pages 913-925

  Anders, Andreas ^a   Watt, Stephen ^b,c   Bähler, Jürg ^b,c   Sawin, Kenneth E ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

tubulin; Gene mapping; H2A.Z; Schizosaccharomyces pombe; Swr1

Indexed keywords

CHROMATIN REMODELLING FACTOR SWR1; FUNGAL PROTEIN; HISTONE; KANAMYCIN; MICROTUBULE NUCLEATION MODIFIER 22-1 PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; AUXOTROPHY; CHROMOSOME MUTATION; CONTROLLED STUDY; FUNGAL GENETICS; FUNGAL STRAIN; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENE MAPPING; GENE MUTATION; GENETIC LINKAGE; GENETIC REGULATION; MARKER GENE; MICROARRAY ANALYSIS; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL;

ADENOSINE TRIPHOSPHATASES; ALLELES; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMOSOME MAPPING; GENETIC MARKERS; GENOME, FUNGAL; HISTONES; MICROTUBULES; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; TUBULIN;

SCHIZOSACCHAROMYCES POMBE; SCHIZOSACCHAROMYCETACEAE;

EID: 59549085388     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1639     Document Type: Article

References (45)

1. Akamatsu Y, Dziadkowiec D, Ikeguchi M, et al. 2003. Two different Swi5-containing protein complexes are involved in mating-type switching and recombination repair in fission yeast. Proc Natl Acad Sci USA 100: 15770-15775.
2. Anders A, Lourenco PC, Sawin KE. 2006. Noncore components of the fission yeast γ-tubulin complex. Mol Biol Cell 17: 5075-5093.
3. Badin-Larcon AC, Boscheron C, Soleilhac JM, et al. 2004. Suppression of nuclear oscillations in Saccharomyces cerevisiae expressing Glu tubulin. Proc Natl Acad Sci USA 101: 5577-5582.
4. Bähler J, Wu JQ, Longtine MS, et al. 1998. Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14: 943-951.
5. Bhamidipati A, Lewis SA, Cowan NJ. 2000. ADP ribosylation factor-like protein 2 (Arl2) regulates the interaction of tubulin-folding cofactor D with native tubulin. J Cell Biol 149: 1087-1096.
6. Browning H, Hayles J, Mata J, et al. 2000. Tea2p is a kinesin-like protein required to generate polarized growth in fission yeast. J Cell Biol 151: 15-28.
7. Carr AM, Dorrington SM, Hindley J, et al. 1994. Analysis of a histone H2A variant from fission yeast: evidence for a role in chromosome stability. Mol Gen Genet 245: 628-635.
8. Chang EC, Barr M, Wang Y, et al. 1994. Cooperative interaction of Sz pombe proteins required for mating and morphogenesis. Cell 79: 131-141.
9. Davis L, Smith GR. 2003. Nonrandom homolog segregation at meiosis I in Schizosaccharomyces pombe mutants lacking recombination. Genetics 163: 857-874.
10. De Veaux LC, Hoagland NA, Smith GR. 1992. Seventeen complementation groups of mutations decreasing meiotic recombination in Schizosaccharomyces pombe. Genetics 130: 251-262.
11. Egel R. 2004. Fission yeast in general genetics. In The Molecular Biology of Schizosaccharomyces pombe, Egel R (ed.). Springer: Berlin; 1-12.
12. Egel R, Beach DH, Klar AJ. 1984. Genes required for initiation and resolution steps of mating-type switching in fission yeast. Proc Natl Acad Sci USA 81: 3481-3485.
13. Ellermeier C, Schmidt H, Smith GR. 2004. Swi5 acts in meiotic DNA joint molecule formation in Schizosaccharomyces pombe. Genetics 168: 1891-1898.
14. Fujita A, Vardy L, Garcia MA, Toda T. 2002. A fourth component of the fission yeast γ-tubulin complex, Alp16, is required for cytoplasmic microtubule integrity and becomes indispensable when γ-tubulin function is compromised. Mol Biol Cell 13: 2360-2373.
15. Gutz H, Schmidt H. 1985. Switching genes in Schizosaccharomyces pombe. Curr Genet 9: 325-331.
16. Hansen KR, Burns G, Mata J, et al. 2005. Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Mol Cell Biol 25: 590-601.
17. Harkins HA, Page N, Schenkman LR, et al. 2001. Bud8p and Bud9p, proteins that may mark the sites for bipolar budding in yeast. Mol Biol Cell 12: 2497-2518.
18. Holland S, Ioannou D, Haines S, Brown WR. 2005. Comparison of Dam tagging and chromatin immunoprecipitation as tools for the identification of the binding sites for Sz. pombe CENP-C. Chromosome Res 13: 73-83.
19. Kobor MS, Venkatasubrahmanyam S, Meneghini MD, et al. 2004. A protein complex containing the conserved Swi2/Snf2-related ATPase Swr1p deposits histone variant H2A.Z into euchromatin. PLoS Biol 2: E131.
20. Kohli J, Hottinger H, Munz P, et al. 1977. Genetic mapping in Schizosaccharomyces pombe by mitotic and meiotic analysis and induced haploidization. Genetics 87: 471-489.
21. Krapp A, Schmidt S, Cano E, Simanis V. 2001. Sz. pombe cdc11p, together with sid4p, provides an anchor for septation initiation network proteins on the spindle pole body. Curr Biol 11: 1559-1568.
22. Krogan NJ, Keogh MC, Datta N, et al. 2003. A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. Mol Cell 12: 1565-1576.
23. Lyne R, Burns G, Mata J, et al. 2003. Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data. BMC Genom 4: 27.
24. Mata J, Nurse P. 1997. tea1 and the microtubular cytoskeleton are important for generating global spatial order within the fission yeast cell. Cell 89: 939-949.
25. Matsuyama A, Arai R, Yashiroda Y, et al. 2006. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat Biotechnol 24: 841-847.
26. Matsuyama A, Shirai A, Yashiroda Y, et al. 2004. pDUAL, a multipurpose, multicopy vector capable of chromosomal integration in fission yeast. Yeast 21: 1289-1305.
27. Mizuguchi G, Shen X, Landry J, et al. 2004. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303: 343-348.
28. Moreno S, Klar A, Nurse P. 1991. Molecular analysis of the fission yeast Schizosaccharomyces pombe. Meth Enzymol 194: 795-823.
29. Munz P, Wolf K, Kohli J, Leupold U. 1989. Genetics overview. In Molecular Biology of the Fission Yeast, Nasim A, Young P, Johnson BF (eds). Academic Press: New York; 1-30.
30. Pasero P, Marilley M. 1993. Size variation of rDNA clusters in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Gen Genet 236: 448-452.
31. Patch AM, Aves SJ. 2007. Fingerprinting fission yeast: polymorphic markers for molecular genetic analysis of Schizosaccharomyces pombe strains. Microbiology 153: 887-897.
32. Perkins DD. 1949. Biochemical mutants in the smut fungus Ustilago maydis. Genetics 34: 607-626.
33. Radcliffe PA, Vardy L, Toda T. 2000. A conserved small GTP-binding protein A1p41 is essential for the cofactor-dependent biogenesis of microtubules in fission yeast. FEBS Lett 468: 84-88.
34. + encodes an MAP kinase kinase kinase that phosphorylates and activates Wis1 MAP kinase kinase in response to high osmolarity. Mol Biol Cell 9: 2325-2335.
35. Schmidt H. 1993. Effective long range mapping in Schizosaccharomyces pombe with the help of swi5. Curr Genet 24: 271-273.
36. Schmidt H, Kapitza P, Gutz H. 1987. Switching genes in Schizosaccharomces pombe: their influence on cell viability and recombination. Curr Genet 11: 303-308.
37. Schmidt H, Kapitza-Fecke P, Stephen ER, Gutz H. 1989. Some of the swi genes of Schizosaccharomyces pombe also have a function in the repair of radiation damage. Curr Genet 16: 89-94.
38. Snaith HA, Sawin KE. 2003. Fission yeast mod5p regulates polarized growth through anchoring of tea1p at cell tips. Nature 423: 647-651.
39. Tomlin GC, Morrell JL, Gould KL. 2002. The spindle pole body protein Cdc11p links Sid4p to the fission yeast septation initiation network. Mol Biol Cell 13: 1203-1214.
40. 1 phase and is a component of the spindle assembly checkpoint. EMBO J 19: 6098-6111.
41. Venkatram S, Tasto JJ, Feoktistova A, et al. 2004. Identification and characterization of two novel proteins affecting fission yeast γ-tubulin complex function. Mol Biol Cell 15: 2287-2301.
42. White S. 2008. Charcterization of factors affecting RNAi-directed heterochromatin assembly in fission yeast. PhD thesis, University of Edinburgh.
43. Wood V, Gwilliam R, Rajandream MA, et al. 2002. The genome sequence of Schizosaccharomyces pombe. Nature 415: 871-880.
44. Young JA, Hyppa RW, Smith GR. 2004. Conserved and nonconserved proteins for meiotic DNA breakage and repair in yeasts. Genetics 167: 593-605.
45. Zimmerman S, Tran PT, Daga RR, et al. 2004. Rsp1p, a J domain protein required for disassembly and assembly of microtubule organizing centers during the fission yeast cell cycle. Dev Cell 6: 497-509.