A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency

Proteomics

Volumn 9, Issue 1, 2009, Pages 159-170

  Torabi, Sepideh ^a,b   Wissuwa, Matthias ^c   Heidari, Manzar ^a   Naghavi, Mohammad Reza ^b   Gilany, Kambiz ^d   Hajirezaei, Mohammad Reza ^e   Omidi, Mansoor ^b   Yazdi Samadi, Bahman ^b   Ismail, Abdelbagi M ^f   Salekdeh, Ghasem Hosseini ^a  

^a AGRICULTURAL BIOTECHNOLOGY RESEARCH INSTITUTE OF IRAN   (Iran)

^b UNIVERSITY OF TEHRAN   (Iran)

^c JAPAN INTERNATIONAL RESEARCH CENTER FOR AGRICULTURAL SCIENCES   (Japan)

^d UNIVERSITY OF ANTWERP   (Belgium)

^e LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^f INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

Phosphorus deficiency; Rice; Two dimensional electrophoresis

Indexed keywords

PHOSPHORUS; REACTIVE OXYGEN METABOLITE; ABSCISIC ACID; ANTIOXIDANT; CHITINASE; INORGANIC SALT; MESSENGER RNA; PROTEIN KINASE; VEGETABLE PROTEIN;

ADAPTATION; AMINO ACID SEQUENCE; ARTICLE; CHROMOSOME 12; CITRIC ACID CYCLE; COMPARATIVE STUDY; CONTROLLED STUDY; GENOTYPE; MASS SPECTROMETRY; NONHUMAN; NUTRITIONAL DEFICIENCY; PHOSPHATE DEFICIENCY; PLANT DEFENSE; PLANT ROOT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEOMICS; QUANTITATIVE TRAIT LOCUS; RICE; SIGNAL TRANSDUCTION; STRESS; TWO DIMENSIONAL ELECTROPHORESIS; CHEMISTRY; CHROMOSOME; DOWN REGULATION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; OXIDATIVE STRESS; TWO DIMENSIONAL GEL ELECTROPHORESIS; UPREGULATION;

ABSCISIC ACID; ADAPTATION, PHYSIOLOGICAL; ANTIOXIDANTS; CHITINASE; CHROMOSOMES; CITRIC ACID CYCLE; DOWN-REGULATION; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION REGULATION, PLANT; GENOTYPE; ORYZA SATIVA; OXIDATIVE STRESS; PHOSPHORUS; PLANT PROTEINS; PLANT ROOTS; PROTEIN KINASES; QUANTITATIVE TRAIT LOCI; RNA, MESSENGER; SALTS; UP-REGULATION;

EID: 59449093938     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800350     Document Type: Article

References (58)

1. Batjes, N. H., A world data set of derived soil properties by FAO- UNESCO soil unit for global modelling. Soil Use Manage. 1997, 73, 9-16.
2. Ismail, A. M., Heuer, S., Thomson, M. J., Wissuwa, M., Genetic and genomic approaches to develop rice germplasm for problem soils. Plant Mol. Biol. 2007, 65, 547-570.
3. Runge- Metzger, A., Closing the cycle: Obstacles to efficient P management for improved global food security. Phosphorus Glob. Environ. 1995, 27-42.
4. Withers, P. J. A., Edwards, A. C., Foy, R. H., Phosphorus cycling in UK agriculture and implications for phosphorus loss from soil. Soil Use Manage. 2001, 77, 139-149.
5. Hammond, J. P., Broadley, M. R., White, P. J., Genetic responses to phosphorus deficiency. Ann. Bot. 2004, 94, 323-332.
6. Salekdeh, G. H., Komatsu, S., Crop proteomics: Aim at sustainable agriculture of tomorrow. Proteomics 2007, 7, 2976-2996.
7. Li, K., Xu, C., Zhang, K., Yang, A., Zhang, J., Proteomic analysis of roots growth and metabolic changes under phosphorus deficit in maize (Zea mays L.) plants. Proteomics 2007, 7, 1501-1512.
8. Wissuwa, M., Yano, M., Ae, N., Mapping of QTLs for phosphorus-deficiency tolerance in rice (Oryza sativa L.). TAG Theor. Appl. Genet. 1998, 97, 777-783.
9. Ni, J. J., Wu, P., Senadhira, D., Huang, N., Mapping QTLs for phosphorus deficiency tolerance in rice (Oryza sativa L.). TAG Theor. Appl. Genet. 1998, 97, 1361-1369.
10. Wissuwa, M., Ae, N., Genotypic variation for tolerance to phosphorus deficiency in rice and the potential for its exploitation in rice improvement. Plant Breed. 2001, 720,43-48.
11. Wissuwa, M., Wegner, J., Ae, N., Yano, M., Substitution mapping of Pup1: A major QTL increasing phosphorus uptake of rice from a phosphorus-deficient soil. Theor. Appl. Genet. 2002, 705, 890-897.
12. Yoshida, S., Forno, D. A., Cock, J. H., Gomez, K. A., Laboratory Manual for Physiological Studies of Rice, Los Banos, Filipinas 1976.
13. Blum, H., Beier, H., Gross, H. J., Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Elec- trophoresis 1987, 8, 93-99.
14. Neuhoff, V., Arold, N., Taube, D., Ehrhardt, W., Improved staining of proteins in polyacrylamide gels including iso- electric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 1988, 9, 255-262.
15. -δ δct method. Methods 2001, 25, 402-408.
16. Kurata, N., Nagamura, Y., Yamamoto, K., Harushima, Y. et al., A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nat. Genet. 1994, 8, 365-372.
17. Panaud, O., Chen, X., McCouch, S. R., Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol. Genet. Genomics 1996, 252, 597-607.
18. Kirk, G. J. D., Santos, E. E., Findenegg, G. R., Phosphate solubilization by organic anion excretion from rice (Oryza sativa L.) growing in aerobic soil. Plant Soil 1999, 211, 11-18.
19. Neumann, G., Massonneau, A., Martinoia, E., Römheld, V., Physiological adaptations to phosphorus deficiency during proteoid root development in white lupin. Planta 1999, 208, 373-382.
20. Kihara, T., Wada, T., Suzuki, Y., Hara, T., Koyama, H., Alteration of citrate metabolism in cluster roots of white lupin. Plant Cell Physiol. 2003, 44, 901-908.
21. Hammond-Kosack, K. E., Jones, J. D. G., Resistance gene- dependent plant defense responses. Plant Cell 1996, 8, 1773-1791.
22. Dietz, K. J., Horling, F., Konig, J., Baier, M., The function of chloroplast 2-cysteine peroxiredoxin in peroxide detoxification and its regulation. J. Exp. Biol. 2002, 53, 1321-1329.
23. Shikanai, T., Takeda, T., Yamauchi, H., Sano, S. et al., Inhibition of ascorbate peroxidase under oxidative stress in tobacco having bacterial catalase in chloroplasts. FEBS Lett. 1998, 428, 47-51.
24. Akileswaran, L., Brock, B. J., Cereghino, J. L., Gold, M. H., 1,4-Benzoquinone reductase from phanerochaete chrysos- porium: cDNA Cloning and regulation of expression. Appl. Environ. Microbiol. 1999, 65, 415-421.
25. Marrs, K. A., The functions and regulation of glutathione S- transferases in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1996, 47, 127-158.
26. Roxas, V. P., Smith, R. K., Allen, E. R., Allen, R. D., Over- expression of glutathione S-transferase/glutathione perox- idase enhances the growth of transgenic tobacco seedlings during stress. Nat. Biotechnol. 1997, 75, 988-991.
27. Loyall, L., Uchida, K., Braun, S., Furuya, M., Frohnmeyer, H., Glutathione and a UV light-induced glutathione S-transfer- ase are involved in signaling to chalcone synthase in cell cultures. Plant Cell 2000, 72, 1939-1950.
28. Iusem, N. D., Bartholomew, D. M., Hitz, W. D., Scolnik, P. A., Tomato (Lycopersicon esculentum) transcript induced by water deficit and ripening. Plant Physiol. 1993, 702, 1353-1354.
29. Maskin, L., Frankel, N., Gudesblat, G., Demergasso, M. J. et al., Dimerization and DNA-binding of ASR1, a small hydro- philic protein abundant in plant tissues suffering from water loss. Biochem. Biophys. Res. Commun. 2007, 352, 831-835.
30. Riccardi, F., Gazeau, P., de Vienne, D., Zivy, M., Protein changes in response to progressive water deficit in maize: Quantitative variation and polypeptide identification. Plant Physiol. 1998, 117, 1253-1263.
31. Gazanchian, A., Hajheidari, M., Sima, N. K., Salekdeh, G. H., Proteome response of Elymus elongatum to severe water stress and recovery. J. Exp. Bot. 2007, 58, 291-300.
32. Salekdeh, G. H., Siopongco, J., Wade, L. J., Ghareyazie, B., Bennett, J., A proteomic approach to analyzing drought-and salt-responsiveness in rice. Field Crops Res. 2002, 76, 199-219.
33. Kalifa, Y., Perlson, E., Gilad, A., Konrad, Z. et al.,Over- expression of the water and salt stress-regulated Asr 1 gene confers an increased salt tolerance. Plant Cell Environ. 2004, 27, 1459-1468.
34. Cakir, B., Agasse, A., Gaillard, C., Saumonneau, A. et al.,A grape ASR protein involved in sugar and abscisic acid signaling. Plant Cell 2003, 75, 2165-2180.
35. Carrari, F., Fernie, A. R., Iusem, N. D., Heard it through the grapevine? ABA and sugar cross-talk: The ASR story. Trends Plant Sci. 2004, 9, 57-59.
36. Claes, B., Dekeyser, R., Villarroel, R., Van den Bulcke, M. et al., Characterization of a rice gene showing organ-specific expression in response to salt stress and drought. Plant Cell 1990, 2, 19-27.
37. Garcia, A. B., Engler, J. A., Claes, B., Villarroel, R. et al., The expression of the salt-responsive gene salT from rice is regulated by hormonal and developmental cues. Planta 1998, 207, 172-180.
38. Moons, A., Prinsen, E., Bauw, G., Van Montagu, M., Antagonistic effects of abscisic acid and jasmonates on salt stress- inducible transcripts in rice roots. Plant Cell 1997, 9, 2243-2259.
39. Kim, S. T., Kim, S. G., Hwang, D. H., Kang, S. Y. et al., Expression of a salt-induced protein (SALT) in suspension- cultured cells and leaves of rice following exposure to fungal elicitor and phytohormones. Plant Cell Rep. 2004, 23, 256-262.
40. Hammond, J. P., Bennett, M. J., Bowen, H. C., Broadley, M. R. et al., Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. Plant Physiol. 2003, 732, 578-596.
41. Wasaki, J., Rothe, A., Kania, A., Neumann, G. et al., Root exudation, phosphorus acquisition, and microbial diversity in the rhizosphere of white lupine as affected by phosphorus supply and atmospheric carbon dioxide concentration. J. Environ. Qual. 2005, 34, 2157-2166.
42. Punja, Z. K., Zhang, Y. Y., Plant chitinases and their roles in resistance to fungal diseases. J. Nematol. 1993, 25, 526-540.
43. Daugrois, J. H., Lafitte, C., Barthe, J. P., Touze, A., Induction ßof -1, 3-glucanase and chitinase activity in compatible and incompatible interactions between Colletotrichum linde- muthianum and bean cultivars. J. Phytopathol. 1990, 730, 34.
44. Metraux, J. P., Streit, L., Staub, T., A pathogenesis- related protein in cucumber is a chitinase. Physiol. Mol. Plant Pathol. 1988, 33, 1-9.
45. Ernst, D., Schraudner, M., Langebartels, C., Sandermann, H., Ozone-induced changes of mRNA levels of β-1, 3-glucanase, chitinase and 'pathogenesis- related' protein 1b in tobacco plants. Plant Mol. Biol. 1992, 20, 673-682.
46. Chen, R. D., Yu, L. X., Greer, A. F., Cheriti, H., Tabaeizadeh, Z., Isolation of an osmotic stress-and abscisic acid-induced gene encoding an acidic endochitinase from Lycopersicon chilense. Mol. Genet. Genomics 1994, 245, 195-202.
47. Hong, J. K., Hwang, B. K., Promoter activation of pepper class II basic chitinase gene, CAChi2, and enhanced bacterial disease resistance and osmotic stress tolerance in the CAChi2-overexpressing Arabidopsis. Planta 2006, 223, 433-448.
48. Dana, M. M., Pintor-Toro, J. A., Cubero, B., Transgenic tobacco plants overexpressing chitinases of fungal origin show enhanced resistance to biotic and abiotic stress agents. Plant Physiol. 2006, 742, 722-730.
49. Zhu, J. K., Cell signaling under salt, water and cold stresses. Curr. Opin. Plant Biol. 2001, 4, 401-406.
50. Singh, K. B., Foley, R. C., Oñate-Sánchez, L., Transcription factors in plant defense and stress responses. Curr. Opin. Plant Biol. 2002, 5, 430-436.
51. Torii, K. U., Receptor kinase activation and signal transduction in plants: An emerging picture. Curr. Opin. Plant Biol. 2000, 3, 361-367.
52. Shiu, S. H., Bleecker, A. B., Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc. Natl. Acad. Sci. 2001, 181141598.
53. Czernic, P., Visser, B., Sun, W., Savouré, A. et al., Characterization of an Arabidopsis thaliana receptor-like protein kinase gene activated by oxidative stress and pathogen attack. Plant J. 1999, 78, 321-327.
54. Du, L., Chen, Z., Identification of genes encoding receptorlike protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Ara- bidopsis. Plant J. 2000, 24, 837-847.
55. Ohtake, Y., Takahashi, T., Komeda, Y., Salicylic acid induces the expression of a number of receptor-like kinase genes in Arabidopsis thaliana. Plant Cell Physiol. 2000, 47, 1038-1044.
56. Jiang, J., Li, J., Xu, Y., Han, Y. et al., RNA: knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice. Plant Cell Physiol. 2007, 30, 690-699.
57. Gygi, S. P., Rochon, Y., Franza, B. R., Aebersold, R., Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 1999, 79, 1720-1730.
58. Murray, M. G., Thompson, W. F., Rapid isolation of high molecular weight plant DNA. Nucleic Acid Res. 1980, 8, 4321-4326.