Efficient silencing of reporter transgenes coupled to known functional promoters in sugarcane, a highly polyploid crop species

Planta

Volumn 229, Issue 3, 2009, Pages 549-558

  Mudge, Stephen R ^a   Osabe, Kenji ^a   Casu, Rosanne E ^b   Bonnett, Graham D ^b   Manners, John M ^b   Birch, Robert G ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b CSIRO   (Australia)

Author keywords

Allelic variation; Promoter function; Saccharum; Transgene silencing

Indexed keywords

TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

ALLELE; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CROP; GENE SILENCING; GENETICS; METABOLISM; MOLECULAR GENETICS; POLYPLOIDY; PROMOTER REGION; REPORTER GENE; SEQUENCE ALIGNMENT; SUGARCANE; TRANSGENE; UPREGULATION;

ALLELES; AMINO ACID SEQUENCE; CROPS, AGRICULTURAL; GENE SILENCING; GENES, REPORTER; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; POLYPLOIDY; PROMOTER REGIONS, GENETIC; SACCHARUM; SEQUENCE ALIGNMENT; TRANSCRIPTION FACTORS; TRANSGENES; UP-REGULATION;

SACCHARUM;

EID: 59449086861     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-008-0852-8     Document Type: Article

References (35)

1. N Baranowskij C Frohberg S Prat L Willmitzer 1994 A novel DNA-binding protein with homology to Myb oncoproteins containing only one repeat can function as a transcriptional activator EMBO J 13 5383 5392
2. M Barow 2006 Endopolyploidy in seed plants Bioessays 28 271 281
3. RG Birch 1997 Plant transformation: problems and strategies for practical application Ann Plant Physiol 48 297 326
4. Birch RG (2007) Metabolic engineering in sugarcane: assisting the transition to a bio-based economy. In: Verpoorte RA, Alfermann W, Johnson TS (eds) Applications of plant metabolic engineering. Springer, Berlin, pp 249-281
5. R Bower AR Elliott BAM Potier RG Birch 1996 High-efficiency, microprojectile-mediated cotransformation of sugarcane, using visible or selectable markers Mol Breed 2 239 249
6. RE Casu CM Dimmock SC Chapman CPL Grof CL McIntyre GD Bonnett JM Manners 2004 Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling Plant Mol Biol 54 503 517
7. ZJ Chen ZF Ni 2006 Mechanisms of genomic rearrangements and gene expression changes in plant polyploids Bioessays 28 240 252
8. JM Chirgwin AE Przybyla RJ Macdonald WJ Rutter 1979 Isolation of biologically active ribonucleic-acid from sources enriched in ribonuclease Biochemistry 18 5294 5299
9. AH Christensen RA Sharrock PH Quail 1992 Maize polyubiquitin genes-structure, thermal perturbation of expression and transcript splicing, and promoter activity following transfer to protoplasts by electroporation Plant Mol Biol 18 675 689
10. L Clarke J Carbon 1976 Colony bank containing synthetic Col El hybrid plasmids representative of entire Escherichia coli genome Cell 9 91 99
11. GM Cordeiro GO Taylor RJ Henry 2000 Characterisation of microsatellite markers from sugarcane (Saccharum sp.), a highly polyploid species Plant Sci 155 161 168
12. R Cronn M Cedroni T Haselkorn C Grover JF Wendel 2002 PCR-mediated recombination in amplification products derived from polyploid cotton Theor Appl Genet 104 482 489
13. A Cuadrado R Acevedo SMD de la Espina N Jouve C de la Torre 2004 Genome remodelling in three modern S-officinarum x S-spontaneum sugarcane cultivars J Exp Bot 55 847 854
14. A D'Hont L Grivet P Feldmann S Rao N Berding JC Glaszmann 1996 Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp) by molecular cytogenetics Mol Gen Genet 250 405 413
15. SJ Edme JC Comstock JD Miller PYP Tai 2005 Determination of DNA content and genome size in sugarcane J Am Soc Sugar Cane Technol 25 1 16
16. J Finnegan D McElroy 1994 Transgene inactivation: plants fight back! Bio/Technol 12 883 888
17. JC Glaszmann A Fautret JL Noyer P Feldmann C Lanaud 1989 Biochemical genetic-markers in sugarcane Theor Appl Genet 78 537 543
18. Graham MW, Mudge SR, Sternes PR, Birch RG (2008) Understanding and avoiding transgene silencing. In: Stewart CN, Touraev A, Citovsky V, Tzfira T (eds) Plant transformation technologies. Wiley-Blackwell, New York, (in Press)
19. L Grivet JC Glaszmann P Arruda 2001 Sequence polymorphism from EST data in sugarcane: a fine analysis of 6-phosphogluconate dehydrogenase genes Genet Mol Biol 24 161 167
20. L Grivet JC Glaszmann M Vincentz F da Silva P Arruda 2003 ESTs as a source for sequence polymorphism discovery in sugarcane: example of the Adh genes Theor Appl Genet 106 190 197
21. Hansom S, Bower R, Zhang L, Potier B, Elliott A, Basnayake S, Cordeiro G, Hogarth DM, Cox M, Berding N, Birch RG (1999) Regulation of transgene expression in sugarcane. In: Proceedings of XXIII International Society Sugar Cane Technologists Congress, New Delhi, India, 22-26 February 1999. vol. 2. pp 278-290
22. IL Ingelbrecht JE Irvine TE Mirkov 1999 Posttranscriptional gene silencing in transgenic sugarcane. Dissection of homology-dependent virus resistance in a monocot that has a complex polyploid genome Plant Physiol 119 1187 1197
23. N Jannoo L Grivet M Seguin F Paulet R Domaingue PS Rao A Dookun A D'Hont JC Glaszmann 1999 Molecular investigation of the genetic base of sugarcane cultivars Theor Appl Genet 99 171 184
24. R Jefferson 1987 Assaying chimeric genes in plants: the GUS gene fusion system Plant Mol Biol Rep 5 387 405
25. C-A Lu TD Ho S-L Ho SM Yu 2002 Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of a-amylase gene expression Plant Cell 14 1963 1980
26. K Luehrsen V Walbot 1993 Firefly luciferase as a reporter for plant gene expression studies Promega Notes 44 24 29
27. CL McIntyre M Jackson GM Cordeiro O Amouyal S Hermann KS Aitken F Eliott RJ Henry RE Casu GD Bonnett 2006 The identification and characterisation of alleles of sucrose phosphate synthase gene family III in sugarcane Mol Breed 18 30 50
28. L Milanesi M Muselli P Arrigo 1996 Hamming clustering method for signals prediction in 5and 3 regions of eukaryotic genes Comput Appl Biosci 12 p399 p404
29. AL Rae CPL Grof RE Casu GD Bonnett 2005 Sucrose accumulation in the sugarcane stem: pathways and control points for transport and compartmentation Field Crops Res 92 159 168
30. Rogers S, Bendich A (1988) Extraction of DNA from plant tissues. In: Plant molecular biology manual. Kluwer Academic Publishers, Dordrecht, pp 1-10
31. I Rubio-Somoza M Martinez Z Abraham I Diaz P Carbonero 2006 Ternary complex formation between HvMYBS3 and other factors involved in transcriptional control in barley seeds Plant J 47 269 281
32. I Rubio-Somoza M Martinez I Diaz P Carbonero 2006 HvMCB1, a R1MYB transcription factor from barley with antagonistic regulatory functions during seed development and germination Plant J 45 17 30
33. HR Wei ML Wang PH Moore HH Albert 2003 Comparative expression analysis of two sugarcane polyubiquitin promoters and flanking sequences in transgenic plants J Plant Physiol 160 1241 1251
34. MZ Yang R Bower MD Burow AH Paterson TE Mirkov 2003 A rapid and direct approach to identify promoters that confer high levels of gene expression in monocots Crop Sci 43 1805 1813
35. W Yu KJ Rusterholtz AT Krummel N Lehman 2006 Detection of high levels of recombination generated during PCR amplification of RNA templates Biotechniques 40 499 507