A solution to protein folding problem using a genetic algorithm with modified keep best reproduction strategy

2007 IEEE Congress on Evolutionary Computation, CEC 2007

Volumn , Issue , 2007, Pages 4776-4780

  Judy, M V ^a   Ravichandran, K S ^a  

^a SASTRA UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC MATERIAL; MODIFIED KEEP-BEST REPRODUCTION (MKBR); REPRODUCTION STRATEGY;

GENETIC ALGORITHMS; GENETIC ENGINEERING; OPTIMIZATION; PROBLEM SOLVING;

PROTEIN FOLDING;

EID: 59349119693     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CEC.2007.4425099     Document Type: Conference Paper

References (13)

1. Clayton Matthew Johnson, Anitha Katikireddy, "A Genetic Algorithm with Backtracking for Protein structure Prediction. GECCO'06,July 8-12, 2006, Seatle, Washington, USA.
2. K. A. De Jong, "Analysis of the Behavior of a Class of Genetic Adaptive Systems," Ph.D. Dissertation, The University of Michigan, Ann Arbor, MI, 1975.
3. Dill, K. A. Theory for the folding and stability of globular proteins. Biochemistry, 24, 6 (March 12, 1985), 1501-1509.
4. D. E. Goldberg, Genetic Algorithms in Search, Optimization, and Machine Learning, Reading, MA: Addison-Wesley, 1989.
5. J.Grefenstette, R. Gopal, B. Rosmaita, D. van Gucht, "Genetic Algorithms for the Traveling Salesman Problem", Proceedings of the 1st ICGA, pp. 160-168, 1985.
6. R.L. Haupt and S.E. Haupt, Practical Genetic Algorithms, New York: John Wiley & Sons, 1998.
7. Metropolis, X., Rosenbluth, A. W.. Rosenbluth, 11. X.! Teller, A. H. & Teller, E. (1953). Equation of state calculations by fast computing machines. J. Chem. P h p. 21, 1087-1092.
8. Unger, R., and Moult, J. A genetic algorithm for three dimensional protein folding simulations. In Proceedings of the fifth international conference on genetic algorithms (ICGA '93) (Urbana-Champaign, IL, 17-21 July, 1993). Morgan Kaufmann, San Francisco, CA, 1993, 581-588.
9. Whitley, D., "The GENITOR Algorithm and Selection Pressure: Why Rank-Based Allocation of Reproductive Trials is Best, Proceedings of the 3rd International Conference on Genetic Algorithms ZCGA-89, pp. 116121,1989.
10. Whitley, D., Starkweather, T., and D'Ann Puquay, "Scheduling Problems and Traveling Salesman: The Genetic Edge Recombination Operator", Pmceedings of the 3rd International Conference on Genetic Algorithms ICGA-89, pp. 133-140, 1989. 318
11. Wiese, K. and Goodwin, S.D., "Keep-Best Reproduction: A Selection Strategy for Genetic Algorithms,', Proceedings of the 1998 ACM Symposium on Applied Computing SAC'98, pp. 343-348, 1998.
12. Wiese K. and Goodwin, S.D., "Parallel Genetic Algorithms for Constrained Ordering Problems", Proceedings of the 1.lth International Florida Artificial Intelligence Research Symposium, FLAIRS'98, pp. 1O1-105,1998.
13. Wiese, K. and Goodwin, S.D., "The Effect of Genetic Operator Probabilities and Selection Strategies on the Performance of a Genetic Algorithm", Advances in Artificial Intelligence, Lecture Notes in Artificial Intelligence Vol. 1418, Springer Verlag, Germany, pp. 141-153, 1998.