Rapid chip-based capillary electrophoretic mobility shift assay with negative pressure injection for the binding study of transcription factor Abf1 in Saccharomyces cerevisiae

Electrophoresis

Volumn 29, Issue 24, 2008, Pages 5003-5009

  Yang, Qian ^a   Zhao, Yong Chao ^a   Xiong, Qiang ^a   Cheng, Jing ^a,b  

^a Tsinghua University   (China)

^b NATIONAL ENGINEERING RESEARCH CENTER FOR BEIJING BIOCHIP TECHNOLOGY   (China)

Author keywords

Chip based capillary electrophoretic mobility shift; Competition assay; Negative pressure injection; Supershift assay; Transcription factor

Indexed keywords

ELECTROPHORETIC MOBILITY; NUCLEIC ACIDS; OLIGONUCLEOTIDES; TRANSCRIPTION; YEAST;

AUTONOMOUSLY REPLICATING SEQUENCE; BINDING FACTORS; CHIP BASED; CHIP-BASED CAPILLARY ELECTROPHORETIC MOBILITY SHIFT; COMPETITION ASSAYS; ELECTROPHORETIC MOBILITY SHIFT; NEGATIVE PRESSURE INJECTION; NEGATIVE PRESSURES; PRESSURE INJECTION; SUPERSHIFT ASSAYS;

TRANSCRIPTION FACTORS;

DOUBLE STRANDED DNA; HYDROXYPROPYLCELLULOSE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ABF1; UNCLASSIFIED DRUG;

ARTICLE; CAPILLARY ELECTROPHORESIS; CONTROLLED STUDY; DNA PROTEIN COMPLEX; GEL MOBILITY SHIFT ASSAY; NONHUMAN; PRESSURE; PROTEIN DNA INTERACTION; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; SACCHAROMYCES CEREVISIAE; SENSITIVITY AND SPECIFICITY; SEPARATION TECHNIQUE;

EID: 59349116250     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200800218     Document Type: Article

References (28)

1. Pabo, C. O., Sauer, R. T., Annu. Rev. Biochem. 1992, 61, 1053-1095.
2. Craig, N. L., Annu. Rev. Genet. 1988, 22, 77-105.
3. Pingoud, A., Jeltsch, A., Eur. J. Biochem. 1997, 246, 1-22.
4. Margulies, C., Kaguni, J. M., J. Biol. Chem. 1996, 271, 17035-17040.
5. Costanzo, M. C., Hogan, J. D., Cusick, M. E., Davis, B. P. et al., Nucleic Acids Res. 2000, 28, 73-76.
6. Struhl, K., Curr. Opin. Cell Biol. 1993, 5, 513-520.
7. Rhode, P. R., Sweder, K. S., Oegema, K. F., Campbell, J. L., Genes Dev. 1989, 3, 1926-1939.
8. Diffley, J. F. X., Stillman, B., Proc. Natl. Acad. Sci. USA 1988, 85, 2120-2124.
9. Buchman, A. R., Kornberg, R. D., Mol. Cell. Biol. 1990, 10, 887-897.
10. Garner, M. M., Revzin, A., Nucleic Acids Res. 1981, 9, 3047-3060.
11. Jones, O. W., Berg, P., J. Mol. Biol. 1966, 22, 199-209.
12. Solomon, M. J., Varshavsky, A., Proc. Natl. Acad. Sci. USA 1985, 82, 6470-6474.
13. Shao, W., Wei, H.-J., Qiao, J.-Y., Zhao, Y.-C. et al., J. Proteome Res. 2005, 4, 1451-1456.
14. Xian, J., Harrington, M. G., Davidson, E. H., Proc. Natl. Acad. Sci. USA 1996, 93, 86-90.
15. Stebbins, M. A., Hoyt, A. M., Sepaniak, M. J., Hurlburt, B. K., J. Chromatogr. B 1996, 683, 77-84.
16. Foulds, G. J., Etzkorn, F. A., Nucleic Acids Res. 1998, 26, 4304-4305.
17. Ronai, Z., Wang, Y., Khandurina, J., Budworth, P. et al., Electrophoresis 2003, 24, 96-100.
18. Foulds, G. J., Etzkorn, F. A., J. Chromatogr. A 1999, 862, 231-236.
19. Fraga, M. F., Ballestar, E., Esteller, M., J. Chromatogr. B 2003, 789, 431-435.
20. Manz, A., Graber, N., Widmer, H. M., Sens. Actuators 1990, B1, 244-248.
21. Chuang, Y.-J., Huang, J.-W., Makamba, H., Tsai, M. L. et al., Electrophoresis 2006, 27, 4158-4165.
22. Dormer, U. H., Westwater, J., McLaren, N. F., Kent, N. A. et al., J. Biol. Chem. 2000, 275, 32611-32616.
23. Duffy, D. C., McDonald, J. C., Schueller, O. J. A., Whitesides, G. M., Anal. Chem. 1998, 70, 4974-4984.
24. Xiong, Q., Xing, W.-L., Gu, G.-S., Sun, A.-M. et al., J. Anal. Sci. 2006, 22, 627-630.
25. Bai, X., Lee, H. J., Rossier, J. S., Reymomd, F. et al., Lab Chip 2002, 2, 45-49.
26. Zhang, L., Yin, X., Fang, Z., Lab Chip 2006, 6, 258-264.
27. Zhao, Y.-C., Shao, W., Wei, H.-J., Qiao, J.-Y. et al., J. Proteome Res. 2008, 7, 1315-1325.
28. Rhode, P. R., Elsasser, S., Campbell, J. L., Mol. Cell. Biol. 1992, 12, 1064-1077.