Spatial heterogeneity of periphytic microbial communities in a small pesticide-polluted river

FEMS Microbiology Ecology

Volumn 67, Issue 3, 2009, Pages 491-501

  Dorigo, Ursula ^a   Lefranc, Marie ^a,b   Leboulanger, Christophe ^b,c   Montuelle, Bernard ^a   Humbert, Jean François ^b,d  

^a CEMAGREF   (France)

^b UMR CARRTEL   (France)

^c UNIVERSITÉ MONTPELLIER 2   (France)

^d INSTITUT PASTEUR   (France)

Author keywords

Community composition; Periphyton; River; Spatial variability

Indexed keywords

PESTICIDE;

BIOFILM; COMMUNITY COMPOSITION; ENVIRONMENTAL CONDITIONS; HETEROGENEITY; MICROBIAL COMMUNITY; PERIPHYTON; PESTICIDE; PHOTOAUTOTROPHY; POLLUTION EFFECT; POLLUTION EXPOSURE; RIVER POLLUTION; SPATIAL VARIATION; SPECIES DIVERSITY; SPECIES RICHNESS; WATER CHEMISTRY;

ARTICLE; BIOFILM; DENATURING GRADIENT GEL ELECTROPHORESIS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MICROBIAL COMMUNITY; PRIORITY JOURNAL; RIVER; WATER POLLUTION; WATER SAMPLING;

BACTERIA; BIODIVERSITY; BIOFILMS; DNA, BACTERIAL; ENVIRONMENTAL MONITORING; FRANCE; PESTICIDES; RIVERS; RNA, RIBOSOMAL, 16S; SEASONS; WATER MICROBIOLOGY; WATER POLLUTANTS, CHEMICAL;

EUKARYOTA; PROKARYOTA;

EID: 59349108707     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2008.00642.x     Document Type: Article

References (59)

1. Acuna V, Giorgi A, Munoz I, Uelingher U Sabater S (2004) Flow extremes and benthic organic matter shape the metabolism of a headwater Mediterranean stream. Freshwater Biol 49 : 960 971.
2. AFNOR (1982) Essais des Eaux: Norme Française. NFT 90-023, AFNOR.
3. Amann RI, Ludwig W Schleifer K-H (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59 : 143 169.
4. Battin TJ, Kaplan LA, Newbold DJ, Cheng X Hansen C (2003) Effects of current velocity on the nascent architecture of stream microbial biofilms. Appl Environ Microb 69 : 5443 5452.
5. Bérard A Benninghoff C (2001) Pollution-induced community tolerance (PICT) and seasonal variations in the sensitivity of phytoplankton to atrazine in microcosms. Chemosphere 45 : 427 437.
6. Bérard A, Leboulanger C Pelte T (1999) Tolerance of Oscillatoria limnetica Lemmermann to atrazine in natural phytoplankton populations and in pure culture: influence of season and temperature. Arch Environ Con Tox 37 : 472 479.
7. Biggs BJF (1996) Patterns in benthic algae of streams. Algal Ecology (Stevenson RJ, Bothwell ML Lowe RL, eds), pp. 31 56. Academic Press, San Diego.
8. Biggs BJF Thomsen HA (1995) Disturbance of stream periphyton by perturbations in shear-stress - time to structural failure and differences in community resistance. J Phycol 31 : 233 241.
9. Biggs BJF, Goring DG Nikora VI (1998) Subsidy and stress responses of stream periphyton to gradients in water velocity as a function of community growthform. J Phycol 34 : 598 560.
10. Blanck H, Wänkberg S-Å Molander S (1988) Pollution-induced community tolerance - a new ecotoxicological tool. Functional Testing of Aquatic Biota for Estimating Hazards of Chemicals, Vol. 988 (Cairs Jr. J Pratt JR, eds), pp. 219 230. ASTM STP, Philadelphia.
11. Bonin DJ Travers M (1992) Examen critique des méthodes d'estimation de la biomasse et de l'activité des microorganismes dans les systèmes aquatiques. Mar Life 2 : 1 29.
12. Cattaneo A, Kerimian T, Roberge M Marty J (1997) Periphyton distribution and abundance on substrata of different size along a gradient of steam trophy. Hydrobiology 354 : 101 110.
13. Dodds WK, Hutson RE, Eichem AC, Evans MA, Gudder DA, Fritz KM Gray L (1996) The relationship of floods, drying, flow and light to primary production and producer biomass in a prairie stream. Hydrobiology 333 : 151 159.
14. Dorigo U Leboulanger C (2001) A PAM fluorescence-based method for assessing the effects of photosystem II herbicides on freshwater periphyton. J Appl Phycol 13 : 509 515.
15. Dorigo U, Bérard A Humbert J-F (2002) Comparison of eukaryotic phytobenthic community composition in a polluted river by partial 18S rRNA gene cloning and sequencing. Microb Ecol 4 : 372 380.
16. Dorigo U, Bourrain X, Bérard A Leboulanger C (2003) Seasonal changes in river microalgae sensitivity to atrazine and isoproturon, along a contamination gradient. Sci Total Environ 318 : 101 114.
17. Dorigo U, Fontvieille D Humbert J-F (2006) Spatial variability in the abundance and composition of the free-living bacterioplankton community in the pelagic zone of Lake Bourget (France). FEMS Microbiol Ecol 58 : 109 119.
18. Dorigo U, Leboulanger C, Bérard A, Bouchez A, Humbert J-F Montuelle B (2007) Lotic biofilm community structure and pesticide tolerance along a contamination gradient in a vineyard area. Aquat Microb Ecol 50 : 91 102.
19. Excoffier L, Laval G Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinformatics Online 1 : 7 50.
20. Francoeur SN Biggs BJF (2006) Short-term effects of elevated velocity and sediment abrasion on benthic algal communities. Hydrobiology 561 : 59 69.
21. Gouy V Nivon C (2006) Protection des eaux en Beaujolais viticole: caractérisation et suivi de la qualité des eaux sur le bassin versant de la Morcille sur la période 2001-2005. Rapport final d'étude, Cemagref, Lyon.
22. Guasch H Sabater S (1995) Seasonal-variations in photosynthesis- irradiance responses by biofilms in mediterranean streams. J Phycol 31 : 727 735.
23. Guasch H Sabater S (1998) Light history influences the sensitivity to atrazine in periphytic algae. J Phycol 34 : 233 241.
24. Guasch H, Ivorra N, Lehmann V, Paulsson M, Real M Sabater S (1998) Community composition and sensitivity of periphyton to atrazine in flowing waters: the role of environmental factors. J Appl Phycol 10 : 203 213.
25. Guasch H, Paulsson M Sabater S (2002) Effect of copper on algal communities from oligotrophic calcalreous streams. J Phycol 38 : 241 248.
26. Guasch H, Navarro E, Serra A Sabater S (2004) Phosphate limitation influences the sensitivity to copper in periphytic algae. Freshwater Biol 49 : 463 473.
27. Jackson CR, Churchill PF Roden EE (2001) Successional changes in bacterial assemblage structure during epilithic biofilm development. Ecology 82 : 555 556.
28. Jeffrey SW, Mantoura RFC Wright SW (eds) (1997) Phytoplankton Pigments in Oceanography. UNESCO, Paris.
29. Johnson RE, Tuchman NC Peterson CG (1997) Changes in vertical microdistribution of diatoms within a developing periphyton mat. J N Am Benthol Soc 16 : 503 519.
30. Lehtola MJ, Laxandera M, Miettinena IT, Hirvonenc A, Vartiainenb T Martikainenc PJ (2006) The effects of changing water flow velocity on the formation of biofilms and water quality in pilot distribution system consisting of copper or polyethylene pipes. Water Res 40 : 2151 2160.
31. Lock MA John PH (1979) The effects of flow patterns on uptake of phosphorus by river periphyton. Limnol Oceanogr 24 : 376 383.
32. Lowe RL, Guckert JB, Belanger SE, Davidson DH Johnson DW (1996) An evaluation of periphyton community structure and function on tile and cobble substrata in experimental stream mesocosms. Hydrobiology 328 : 135 146.
33. Lyautey E, Teissier S, Charcosset JY, Rols JL Garabetian F (2003) Bacterial diversity of epilithic biofilm assemblages of an anthropised river section, assessed by DGGE analysis of a 16 rDNA fragment. Aquat Microb Ecol 33 : 217 224.
34. Lyautey E, Jackson CR, Cayrou J, Rols J-L Garabetian F (2005a) Bacterial community succession in natural river biofilm assemblages. Microb Ecol 50 : 589 601.
35. Lyautey E, Lacoste B, Ten-Hage L, Rols J-L Garabetian F (2005b) Analysis of bacterial diversity in river biofilms using 16S rDNA PCR-DGGE: methodological settings and fingerprints interpretation. Water Res 39 : 380 388.
36. Massana R, Murray AE, Preston CM DeLong EF (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl Environ Microb 63 : 50 56.
37. McCabe SK Cyr H (2006) Environmental variability influences the structure of benthic algal communities in an oligotrophic lake. Oikos 115 : 197 206.
38. Montuelle B, Gouy B, Roger MC et al 2006) Evaluation de gains biologique et écologique associés à une réduction d'intrants polluants en milieu aquatique. Rapport final Cemagref-CPER 2003-2006, Région Rhône Alpes, 55p.
39. Mosisch TD, Bunn SE Davies PM (2001) The relative importance of shading and nutrients on algal production in subtropical streams. Freshwater Biol 46 : 1269 1278.
40. Patil JS Anil AC (2005) Quantification of diatoms in biofilms: standardisation of methods. Biofouling 21 : 181 188.
41. Pfeifer RF McDiffett WF (1975) Some factors affecting primary productivity of stream riffle communities. Arch Hydrobiol Suppl 75 : 306 317.
42. Poff NL Baker NK (1997) Habitat heterogeneity and algal-grazers interactions in streams: explorations with a spatially explicit model. J N Am Benthol Soc 16 : 263 276.
43. Roberts S, Sabater S Beardall J (2004) Benthic microalgal colonization in streams of differing riparian cover and light availability. J Phycol 40 : 1004 1012.
44. Sabater S, Gregory SV Sedell JR (1998) Community dynamics and metabolism of benthic algae colonizing wood and rock substrata in a forest stream. J Phycol 34 : 561 567.
45. Sabater S, Navarro E Guasch H (2002) Effects of copper on algal communities at different current velocities. J Appl Phycol 14 : 391 398.
46. Schmitt-Jansen M Altenburger R (2005) Predicting and observing responses of algal communities to photosystem II-herbicide exposure using pollution-induced community tolerance and species-sensitivity distributions. Environ Toxicol Chem 24 : 304 312.
47. Seguin F, Leboulanger C, Rimet F, Druart JC Bérard A (2001) Effects of atrazine and nicosulfuron on phytoplankton in systems of increasing complexicity. Arch Environ Con Tox 40 : 198 208.
48. Steinman AD McIntire CD (1987) Effects of irradiance on the community structure and biomass of algal assemblages in laboratory streams. Can J Fish Aquat Sci 44 : 1640 1648.
49. Stevenson RJ (1983) Effects of current and conditions simulating autogenically changing microhabitats on benthic diatom immigration. Ecology 64 : 1514 1524.
50. Stevenson RJ (1996) An introduction to algal ecology in freshwater benthic habitats. Algal Ecology (Stevenson RJ, Bothwell ML Lowe RL, eds), pp. 3 30. Academic Press, San Diego.
51. Stevenson RJ Glover R (1993) Effects of algal density and current on ion transport through periphyton communities. Limnol Oceanogr 38 : 1276 1281.
52. Szabo K, Makk J, Kiss KT, Eiler A, Acs E, Toth B, Kiss AR Bertilsson S (2008) Sequential colonization by river periphyton analysed by microscopy and molecular fingerprinting. Freshwater Biol 53 : 1359 1371.
53. Thioulouse J, Chessel D, Dolédec D Olivier JM (1997) Ade-4: a mulitvariate analysis and graphical display software. Stat Comput 7 : 75 83.
54. Tlili A, Dorigo U, Montuelle B, Margoum C, Carluer N, Gouy V, Bouchez A Bérard A (2008) Responses of chronically contaminated biofilms to short pulses of diuron. An experimental study simulating flooding events in a small river running through a vineyard watershed. Aquat Toxicol 87 : 252 263.
55. Van der Grinten E (2004) Dynamic species interactions in phototrophic biofilms. PhD Thesis, Department of Aquatic Ecology and Ecotoxicology, FNWI, Université d'Amsterdam.
56. Wellnitz T Rader RB (2003) Mechanisms influencing community composition and succession in mountain stream periphyton: interactions between scouring history, grazing and irradiance. J N Am Benthol Soc 22 : 528 541.
57. Whitford LA Schumacher GJ (1961) Effects of current on mineral uptake and respiration by a fresh-water alga. Limnol Oceanogr 6 : 423 425.
58. Wilhelm C, Rudolph I Renner W (1991) A quantitative method based on HPLC-aided pigment analysis to monitor structure and dynamics of the phytoplankton assemblage-A study from Lake Meerfelder Maar (Eifel, Germany). Arch Hydrobiol 123 : 21 35.
59. Ylla I, Romani AM Sabater S (2007) Differential effects of nutrients and light on the primary production of stream algae and mosses. Fundam Appl Limnol 170 : 1 10.