Genetic identification of source populations for an aquarium-traded invertebrate

Animal Conservation

Volumn 12, Issue 1, 2009, Pages 13-19

  Weese, D A ^a   Santos, Scott R ^a  

^a AUBURN UNIVERSITY   (United States)

Author keywords

Anchialine; Crustacean; Halocaridina; Hawai'i; Invertebrate; Population assignment; Wildlife forensics

Indexed keywords

CRUSTACEAN; ENDEMISM; EXTINCTION; INVERTEBRATE; POPULATION GENETICS; SPECIES CONSERVATION;

HAWAIIAN ISLANDS; PACIFIC ISLANDS; PACIFIC OCEAN;

CRUSTACEA; DECAPODA (CRUSTACEA); HALOCARIDINA; INVERTEBRATA; VERTEBRATA;

EID: 59349095054     PISSN: 13679430     EISSN: 14691795     Source Type: Journal    
DOI: 10.1111/j.1469-1795.2008.00215.x     Document Type: Article

References (41)

1. Abdo, Z. & Golding, G. (2007). A step toward barcoding life: A model-based, decision-theoretic method to assign genes to preexisting species groups. Syst. Biol. 56, 44-56.
2. Andrews, C. (1990). The ornamental fish trade and fish conservation. J. Fish Biol. 37, 53-59.
3. Bailey-Brock, J.H. & Brock, R.E. (1993). Feeding, reproduction, and sense organs of the Hawaiian anchialine shrimp Halocaridina rubra (Atyidea). Pac. Sci. 47, 338-355.
4. Brock, R.E. & Bailey-Brock, J.H. (1998). A unique anchialine pool in the Hawaiian Islands. Int. Rev. Hydrobiol. 83, 65-75.
5. Brock, R.E., Norris, J.E., Ziemann, D.A. & Lee, T.M. (1987). Characteristics of water quality in anchialine ponds of the Kona, Hawaii, coast. Pac. Sci. 41, 200-208.
6. Chapman, D.D., Abercrombie, D.L., Douady, C.J., Pikitch, E.K., Stanhope, M.J. & Shivji, M.S. (2003). A streamlined, bi-organelle, multiplex PCR approach to species identification: Application to global conservation and trade monitoring of the great white shark, Carcharodon carcharias. Conserv. Genet. 4, 415-425.
7. Cipriano, F. & Palumbi, S.R. (1999). Genetic tracking of a protected whale. Nature 397, 307-308.
8. CITES (2008). What is CITES? CITES Secretariat, Geneva. http://www.cites.org/eng/disc/what.shtml. Accessed 28 February 2008.
9. Clapham, P. & Van Waerebeek, K. (2007). Bushmeat and bycatch: The sum of the parts. Mol. Ecol. 17, 501-513.
10. Clement, M., Posada, D. & Crandall, K.A. (2000). TCS: A computer program to estimate gene genealogies. Mol. Ecol. 9, 1657-1659.
11. Coleman, A.W. (2003). ITS2 is a double edged tool for eukaryote evolutionary comparisons. Trends Genet. 19, 370-375.
12. Couret, C.L. & Wong, D.C.L. (1978). Larval development of Halocaridina rubra Holthuis (Decapoda, Atyidae). Crustaceana 34, 301-309.
13. Craft, J.D., Russ, A.D., Yamamoto, M.N., Iwai, T.Y., Hau, S., Kahiapo, J., Chong, C.T., Ziegler-Chong, S., Muir, C., Fujita, Y., Polhemus, D.A., Kinzie, R.A. & Santos, S.R. (2008). Islands under islands: The phylogeography and evolution of Halocaridina rubra Holthuis, 1963 (Crustacean: Decapoda: Atyidae) in the Hawaiian archipelago. Limnol. Oceanogr. 53, 675-689.
14. Dawnay, N., Ogden, R., McEwing, R., Carvalho, G.R. & Thorpe, R.S. (2007). Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci. Int. 1, 1-6.
15. Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit 1 from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3, 294-299.
16. Frantz, A.C., Pourtois, J.T., Heuertz, M., Schley, L., Flamand, C., Krier, A., Bertouille, S., Chaumont, F. & Burke, T. (2006). Genetic structure and assignment tests demonstrate illegal translocation of red deer (Cervus elaphus) into a continuous population. Mol. Ecol. 15, 3191-3203.
17. Guglich, E.A., Wilson, P.J. & White, B.N. (1994). Forensic application of repetitive DNA markers to the species identification of animal tissues. J. Forensic Sci. 39, 353-361.
18. Heerbrandt, T.C. & Lin, J.D. (2006). Larviculture of red front shrimp, Caridina gracilirostris (Atyidae, Decapoda). J. World Aquacult. Soc. 37, 186-190.
19. Herbert, P.D.N., Cywinska, A., Ball, S.L. & de Warrd, J.R. (2003). Biological identifications through DNA barcodes. Proc. Roy. Soc. Lond. B 270, 313-321.
20. Hillis, D.M. & Dixon, M.T. (1991). Ribosomal DNA - molecular evolution and phylogenetic inferences. Q. Rev. Biol. 66, 410-453.
21. Hoelzel, A.R. (2001). Shark fishing in fin soup. Conserv. Genet. 2, 69-72.
22. Holthuis, L.B. (1963). On red coloured shrimps (Decapoda, Caridea) from tropical land-locked saltwater pools. Zool. Meded. 16, 261-279.
23. Holthuis, L.B. (1973). Caridean shrimps found in land-locked saltwater pools at four Indo-West Pacific Localities (Sinai Peninsula, Funafuti Atoll, Maui and Hawai'i Islands) with the description of one new genus and four new species. Zool. Meded. 128, 1-48.
24. Iliffe, T.M. (2002). Conservation of anchialine cave biodiversity. In Hydrogeology and biology of post-paleozoic carbonate aquifers: 99-102. Martin, J.B., Wicks, C.M. & Sasowsky, I.D. (Eds). Charles Town, WV: Karst Waters Institute.
25. Iliffe, T.M. (2003) Submarine caves and cave biology of Bermuda. NSS News 217-224
26. Kyle, C.J. & Wilson, C.C. (2007). Mitochondrial DNA identification of game and harvested freshwater fish species. Forensic Sci. Int. 166, 68-76.
27. Lahaye, R., van der Bank, M., Bogarin, D., Warner, J., Pupulin, F., Gigot, G., Maurin, O., Duthoit, S., Barraclough, T.G. & Savolainen, V. (2008). DNA barcoding the floras of biodiversity hotspots. Proc. Natl. Acad. Sci. USA 105, 2923-2928.
28. Maciolek, J.A. (1983). Distribution and biology of Indo-Pacific insular hypogeal shrimp. Bull. Mar. Sci. 33, 606-618.
29. Maciolek, J.A. (1986). Environmental features and biota of anchialine pools on Cape Kinau, Maui, Hawai'i. Stygologia 2, 119-129.
30. Maciolek, J.A. & Brock, R.E. (1974) Aquatic survey of the Kona coast ponds, Hawai'i Islands. Sea Grant Advisory Report AR-74-04.
31. Malik, S., Wilson, P.J., Smith, R.J., Lavigne, D.M. & White, B.N. (1997). Pinniped penises in trade: A molecular-genetic investigation. Conserv. Biol. 11, 1365-1374.
32. Manel, S., Berthier, P. & Luikart, G. (2002). Detecting wildlife poaching: Identifying the origin of individuals with Bayesian assignment test and multilocus genotypes. Conserv. Biol. 16, 650-659.
33. Millions, D.G. & Swanson, B.J. (2006). An application of Manel's model: Detecting bobcat poaching in Michigan. Wildl. Soc. B 34, 150-155.
34. Palumbi, S.R. & Cipriano, F. (1998). Species identification using genetic tools: The value of nuclear and mitochondrial gene sequences in whale conservation. J. Hered. 89, 459-464.
35. Russello, M.A., Hyseni, C., Gibbs, J.P., Cruz, S., Marquez, C., Tapia, W., Velensky, P., Powell, J.R. & Caccone, A. (2007). Lineage identification of Galapagos tortoises in captivity worldwide. Anim. Conserv. 10, 304-311.
36. Santos, S.R. (2006). Patterns of genetic connectivity among anchialine habitats: A case study of the endemic Hawaiian shrimp Halocaridina rubra on the island of Hawai'i. Mol. Ecol. 15, 2699-2718.
37. Stam, W.T., Olsen, J.L., Zaleski, S.F., Murray, S.N., Brown, K.R. & Walters, L.J. (2006). A forensic and phylogenetic survey of Caulerpa species (Caulerpales, Chlorophyta) from the Florida coast, local aquarium shops, and e-commerce: Establishing a proactive baseline for early detection. J. Phycol. 42, 1113-1124.
38. Vos, P., Hogers, R., Bleeker, M., Reijans, M., van de Lee, T., Hornes, M., Frijters, A., Pot, J., Pelemand, J., Kulper, M. & Zabeau, M. (1995). AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414.
39. Wabnitz, C., Taylor, M., Green, E. & Razak, T. (2003). From ocean to aquarium: The global trade in marine ornamental species. Cambridge, UK: UNEP-WCMC.
40. Wasser, S.K., Mailand, C., Booth, R., Mutayoba, B., Kisamo, E., Clark, B. & Stephens, M. (2007). Using DNA to track the origin of the largest ivory seizure since the 1989 trade ban. Proc. Natl. Acad. Sci. USA 104, 4228-4233.
41. Zhang, A.B. & Savolainen, P. (2008). BPSI2.0: A C/C+ + interface program for species identification via DNA barcoding with a BP-neural network by calling the Mathlab engine. Mol. Ecol. Resources (Online DOI:).