Genotyping of IRGM tetranucleotide promoter oligorepeats by fluorescence resonance energy transfer

BioTechniques

Volumn 46, Issue 1, 2009, Pages 58-60

  Intemann, Christopher D ^a,b   Thye, Thorsten ^a,b   Sievertsen, Jürgen ^a   Owusu Dabo, Ellis ^c,d   Horstmann, Rolf D ^a   Meyer, Christian G ^a  

^a BERNHARD NOCHT INSTITUTE FOR TROPICAL MEDICINE   (Germany)

^b UNIVERSITY HOSPITAL SCHLESWIG HOLSTEIN   (Germany)

^c KWAME NKRUMAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Ghana)

^d KUMASI CENTRE FOR COLLABORATIVE RESEARCH IN TROPICAL MEDICINE   (Ghana)

Author keywords

[No Author keywords available]

Indexed keywords

BASE SEQUENCE; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENOTYPE; GHANA; GTP-BINDING PROTEINS; HUMANS; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS, GENETIC;

EID: 59149089595     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/000113045     Document Type: Article

References (12)

1. Bennett, C.D., M.N. Campbell, C.J. Cook, D.J. Eyre, L.M. Nay, D.R. Nielsen, R.P. Rasmussen, and P.S. Bernard. 2003. The LightTyper: high-throughput genotyping using fluorescent melting curve analysis. Biotechniques 34:1288-1295.
2. Lin, Z., J.G. Suzow, J.M. Fontaine, and E.W. Naylor. 2004. A high throughput beta-globin genotyping method by multiplexed melting temperature analysis. Mol. Genet. Metab. 81:237-243.
3. Simonsson, T. and R. Sjöback. 1999. DNA tetraplex formation studied with fluorescence resonance energy transfer. J. Biol. Chem. 274:17379-17383.
4. Simonsson, T., P. Pecinka, and M. Kubista. 1998. DNA tetraplex formation in the control region of c-myc. Nucleic Acids Res. 26:1167-1172.
5. Wang, Y., J. Ju, B.A. Carpenter, J.M. Atherton, G.F. Sensabaugh, and R.A. Mathies. 1995. Rapid sizing of short tandem repeat alleles using capillary array electrophoresis and energy-transfer fluorescent primers. Anal. Chem. 67:1197-1203.
6. Malorny, B., E. Junker, and R. Helmuth. 2008. Multi-locus variable-number tandem repeat analysis for outbreak studies of Salmonella enterica serotype Enteritidis. BMC Microbiol. 8:84.
7. Butler, J.M. 2004. Short tandem repeat analysis for human identity testing. Curr. Protoc. Hum. Genet. 2004, Chapter 14:Unit 14.8.
8. Schmalzing, D., L. Koutny, D. Chisholm, A. Adourian, P. Matsudaira, and D. Ehrlich. 1999 Two-color multiplexed analysis of eight short tandem repeat loci with an electrophoretic microdevice. Anal. Biochem. 270:148-152.
9. Butler, J.M. 2006. Genetics and genomics of core short tandem repeat loci used in human identity testing. J. Forensic Sci. 51:253-265.
10. Oberacher, H., F. Pitterl, G. Huber, H. Niederstätter, M. Steinlechner, and W. Parson. 2008. Increased forensic efficiency of DNA fingerprints through simultaneous resolution of length and nucleotide variability by high-performance mass spectrometry. Hum. Mutat. 29:427-432.
11. Li, L., C.T. Li, R.Y. Li, Y. Liu, Y. Lin, T.Z. Que, M.Q. Sun, and Y. Li. 2006. SNP genotyping by multiplex amplification and microarrays assay for forensic application. Forensic Sci. Int. 162:74-79.
12. Reed, G.H., J.O. Kent, and C.T. Wittwer. 2007. High-resolution DNA melting analysis for simple and efficient molecular diagnostics. Pharmacogenomics 8:597-608.