Corynebacterium sputi sp. nov., isolated from the sputum of a patient with pneumonia

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 12, 2008, Pages 2876-2879

  Yassin, A F ^a   Siering, C ^a  

^a UNIVERSITY OF BONN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; MYCOLIC ACID; RIBOSOME RNA; RNA 16S;

ARTICLE; BACTERIAL CELL WALL; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; CORYNEBACTERIACEAE; CORYNEBACTERIUM; CORYNEBACTERIUM AMYCOLATUM; CORYNEBACTERIUM FRENEYI; CORYNEBACTERIUM HANSENII; CORYNEBACTERIUM SPHENISCI; CORYNEBACTERIUM SPUTI; CORYNEBACTERIUM XEROSIS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PNEUMONIA; PRIORITY JOURNAL; RNA SEQUENCE; SPECIES COMPARISON; SPUTUM ANALYSIS; TAXONOMIC RANK; TYPE STRAIN; CLASSIFICATION; CORYNEBACTERIUM INFECTION; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; SPECIES DIFFERENCE; SPUTUM;

BACTERIA (MICROORGANISMS); CORYNEBACTERIUM; CORYNEBACTERIUM AMYCOLATUM; CORYNEBACTERIUM FRENEYI; CORYNEBACTERIUM SPHENISCI; CORYNEBACTERIUM XEROSIS; CORYNEFORM BACTERIUM;

CORYNEBACTERIUM; CORYNEBACTERIUM INFECTIONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PNEUMONIA; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY; SPUTUM;

EID: 58949098042     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.2008/000414-0     Document Type: Article

References (29)

1. Becker, B., Lechevalier, M. P., Gordon, R. E. & Lechevalier, H. A. (1964). Rapid differentiation between Nocardia and Streptomyces by paper chromatography of whole cell hydrolysates. Appl Microbiol 12, 421-423.
2. Collins, M. D., Burton, R. A. & Jones, D. (1988). Corynebacterium amycolatum sp. nov., a new mycolic acid-less Corynebacterium species from human skin. FEMS Microbiol Lett 49, 349-352.
3. Collins, M. D., Hoyles, L., Foster, G., Sjödén, B. & Falsen, E. (2001). Corynebacterium capitovis sp. nov., from a sheep. Int J Syst Evol Microbiol 51, 857-860.
4. Collins, M. D., Hoyles, L., Foster, G. & Falsen, E. (2004). Corynebacterium caspium sp. nov., from a Caspian seal (Phoca caspica). Int J Syst Evol Microbiol 54, 925-928.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Fernández-Garayzábal, J. F., Collins, M. D., Hutson, R. A., González, I., Fernández, E. & Domínguez, L. (1998). Corynebacterium camporealensis sp. nov., associated with subclinical mastitis in sheep. Int J Syst Bacteriol 48, 463-468.
8. Fernández-Garayzábal, J. F., Vela, A. I., Egido, R., Hutson, R. A., Lanzarot, M. P., Fernández-García, M. & Collins, M. D. (2004). Corynebacterium ciconiae sp. nov., isolated from the trachea of black storks (Ciconia nigra). Int J Syst Evol Microbiol 54, 2191-2195.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. Funke, G., Lawson, P. A. & Collins, M. D. (1997a). Corynebacterium mucifaciens sp. nov., an unusual species from human clinical material. Int J Syst Bacteriol 47, 952-957.
11. Funke, G., von Graevenitz, A., Clarridge, J. E., III & Bernard, K. A. (1997b). Clinical microbiology of coryneform bacteria. Clin Microbiol Rev 10, 125-159.
12. Funke, G., Osorio, C. R., Frei, R., Riegel, P. & Collins, M. D. (1998). Corynebacterium confusum sp. nov., isolated from human clinical specimens. Int J Syst Bacteriol 48, 1291-1296.
13. Goyache, J., Ballesteros, C., Vela, A. I., Collins, M. D., Briones, V., Hutson, R. A., Potti, J., García-Borboroglu, P., Domínguez, L. & Fernández-Garayzábal, J. F. (2003). Corynebacterium sphenisci sp. nov., isolated from wild penguins. Int J Syst Evol Microbiol 53, 1009-1012.
14. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
15. Lechevalier, M. P. (1968). Identification of aerobic actinomycetes of clinical importance. J Lab Clin Med 71, 934-944.
16. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
17. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
18. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. (1980). Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr 188, 221-233.
19. Pascual, C., Lawson, P. A., Farrow, J. A. E., Gimenez, M. N. & Collins, M. D. (1995). Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences. Int J Syst Bacteriol 45, 724-728.
20. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R.M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsiaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
21. Renaud, F. N. R., Aubel, D., Riegel, P., Meugnier, H. & Bollet, C. (2001). Corynebacterium freneyi sp. nov., α-glucosidase-positive strains related to Corynebacterium xerosis. Int J Syst Evol Microbiol 51, 1723-1728.
22. Renaud, F. N. R., Le Coustumier, A., Wilhelm, N., Aubel, D., Riegel, P., Bollet, C. & Freney, J. (2007). Corynebacterium hansenii sp. nov., an α-glucosidase-negative bacterium related to Corynebacterium xerosis. Int J Syst Evol Microbiol 57, 1113-1116.
23. Riegel, P., de Briel, D., Prévost, G., Jehl, F. & Monteil, H. (1994). Genomic diversity among Corynebacterium jeikeium strains and comparison with biochemical characteristics. J Clin Microbiol 32, 1860-1865.
24. Ruimy, R., Riegel, P., Boiron, P., Monteil, H. & Christen, R. (1995). Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences. Int J Syst Bacteriol 45, 740-746.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155.
27. Yassin, A. F., Steiner, U. & Ludwig, W. (2002a). Corynebacterium aurimucosum sp. nov. and emended description of Corynebacterium minutissimum Collins and Jones (1983). Int J Syst Evol Microbiol 52, 1001-1005.
28. Yassin, A. F., Steiner, U. & Ludwig, W. (2002b). Corynebacterium appendicis sp. nov. Int J Syst Evol Microbiol 52, 1165-1169.
29. Yassin, A. F., Chen, W. M., Hupfer, H., Siering, C., Kroppenstedt, R. M., Arun, A. B., Lai, W. A., Shen, F. T., Rekha, P. D. & Young, C. C. (2007). Lysobacter defluvii sp. nov., isolated from municipal solid waste. Int J Syst Evol Microbiol 57, 1131-1136.