Complexities of human promoter sequences

Physica A: Statistical Mechanics and its Applications

Volumn 388, Issue 7, 2009, Pages 1299-1302

  Jiang, Zhibin ^a   Yang, Huijie ^a   Wang, Jianbo ^a  

^a UNIVERSITY OF SHANGHAI FOR SCIENCE AND TECHNOLOGY   (China)

Author keywords

Asymmetric distribution; Complexity measure of Lempel and Ziv; Putative promoter sequences; Series analysis

Indexed keywords

ASYMMETRIC BRANCH; ASYMMETRIC DISTRIBUTION; COMPLEXITY MEASURES; GAUSSIAN FORM; HUMAN PROMOTER SEQUENCES; PROMOTER REGION; PROMOTER SEQUENCES; SERIES ANALYSIS;

PHYSICS;

EID: 58549094705     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2008.12.019     Document Type: Article

References (32)

1. Ohler U., and Niemann H. Trends Genet. 17 (2001) 56
2. Werner T. Mammalian Genome 10 (1999) 168
3. Pedersen A.G., Baldi P., Chauvin Y., and Brunak S. Comput. Chem. 23 (1999) 191
4. Zhang M.Q. Computational methods for promoter recognition. In: Jiang T., Xu Y., and Zhang M.Q. (Eds). Current Topics in Computational Molecular Biology (2002), MIT Press, Cambridge, Massachusetts 249-268
5. Narang V., Sung W.-K., and Mittal A. Art. Intel. Med. 35 (2005) 107
6. Buldyrev S.V., Goldberger A.L., Havlin S., Mantegna R.N., Matsa M.E., Peng C.-K., Simons M., and Stanley H.E. Phys. Rev. E 51 (1995) 5084
7. Peng C.-K., Buldyrev S., Goldberger A., Havlin S., Sciortino F., Simons M., and Stanley H.E. Nature 356 (1992) 168
8. Li W., and Kaneko K. Europhys. Lett. 17 (1992) 655
9. Yang H., Zhao F., Zhuo Y., et al. Phys. Lett. A 292 (2002) 349
10. Provata A., and Almirantis Y. Physica A 247 (1997) 482
11. Provata A., and Almirantis Y. Fractals 8 (2000) 15
12. Yang H., Zhuo Y., and Wu X. J. Phys. A 27 (1994) 6147
13. Salerno M. Phys. Rev. A 44 (1991) 5292
14. Lennholm E., and Homquist M. Physica D 177 (2003) 233
15. Kalosakas G., Rasmussen K.O., and Bishop A.R. Europhys. Lett. 68 (2004) 127
16. Professor Allan Wilson is a representative of the evolutionary biologists, See the homepage of The Allan Wilson Centre for Molecular Ecology and Evolution, http://awcmee.massey.ac.nz/index.htm
17. Leonardo M.-R., John L.S., Gavin C.K., and David L. Nucleic Acids Res. 32 (2004) 949. ftp://ftp.ncbi.nlm.nih.gov/pub/marino/published/hs_promoters/fasta/ See also ftp://ftp.ncbi.nlm.nih.gov/pub/marino/published/hs_promoters/fasta/
18. Suzuki Y., Yamashita R., Nakai K., and Sugano S. Nucleic Acids Res. 30 (2002) 328
19. To cite examples. Marino-Ramirez L., Spuge J.L., Kanga G.C., et al. Nucleic Acids Res. 32 (2004) 5972
20. Bina M., Wyss P., Ren W.H., et al. Genomics 84 (2004) 929
21. Liu G.B., Jiang Y.F., Yan H., et al. DNA Sequence 17 (2006) 270
22. Akan P., and Deloukas P. Gene 410 (2008) 165
23. Tharakaraman K., Bodenreider O., Landsman D., et al. Nucleic Acids Res. 36 (2008) 2777
24. Yang H., Zhao F., Gu J., and Wang B. J. Theor. Biol. 241 (2006) 765
25. Zhao F., Yang H., and Wang B. J. Theor. Biol. 247 (2007) 645
26. lempel A., and Ziv J. IEEE Trans. Inform. Theory IT-22 (1976) 75
27. Kaspar F., and Schuster H.G. Phys. Rev. A 36 (1987) 842
28. Shmulevich I., Kauffman S.A., and Aldana M. Proc. Natl. Acad. Sci. 102 (2005) 13439
29. Pipek J., and Varga I. Phys. Rev. A 46 (1992) 3148
30. Hsieh L.-C., Luo L., Ji F., and Lee H.C. Phys. Rev. Lett. 90 (2003) 018101
31. Kloster M. Phys. Rev. Lett. 95 (2005) 168701
32. Messer P.W., Arndt P.F., and Lassig M. Phys. Rev. Lett. 94 (2005) 138103