White spot syndrome virus protein ICP11: A histone-binding DNA mimic that disrupts nucleosome assembly

Proceedings of the National Academy of Sciences of the United States of America

Volumn 105, Issue 52, 2008, Pages 20758-20763

  Wang, Hao Ching ^a,b   Wang, Han Ching ^a,c   Ko, Tzu Ping ^b   Lee, Yu May ^a,b   Leu, Jiann Horng ^a   Ho, Chun Han ^a,b   Huang, Wei Pang ^a   Lo, Chu Fang ^a   Wang, Andrew H J ^a,b  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b INSTITUTE OF BIOLOGICAL CHEMISTRY   (Taiwan)

^c NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

Apoptosis; Crystal structure; DNase enhancer; Shrimp aquaculture

Indexed keywords

AMINO ACID DERIVATIVE; DEOXYRIBONUCLEASE; DOUBLE STRANDED DNA; HISTONE H2A; HISTONE H2B; HISTONE H3; POLYMER; PROTEIN ICP11; UNCLASSIFIED DRUG; VIRUS DNA; VIRUS PROTEIN;

ARTICLE; CELL STRUCTURE; CONTROLLED STUDY; DNA BINDING; HUMAN; HUMAN CELL; IMMUNOFLUORESCENCE TEST; IN VIVO STUDY; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN LOCALIZATION; WHITE SPOT SYNDROME VIRUS;

ANIMALS; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; DNA; HEMOCYTES; HISTONES; NUCLEOSOMES; PENAEIDAE; PROTEIN BINDING; PROTEIN STRUCTURE, QUATERNARY; VIRAL PROTEINS; WHITE SPOT SYNDROME VIRUS 1;

CRUSTACEA; DECAPODA (CRUSTACEA); EUKARYOTA; SHRIMP WHITE SPOT SYNDROME VIRUS;

EID: 58549094285     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0811233106     Document Type: Article

References (37)

1. Wang CH, et al. (1995) Purification and genomic analysis of baculovirus associated with white spot syndrome (WSBV) of Penaeus monodon. Dis Aquat Organ 23:239-242.
2. Lo CF, et al. (1997) Detection and tissue tropism of white spot syndrome baculovirus (WSBV) in captured brooders of Penaeus monodon with a special emphasis on reproductive organs. Dis Aquat Organ 30:53-72.
3. Yang F, et al. (2001) Complete genome sequence of the shrimp white spot bacilliform virus. J Virol 75:11811-11820.
4. Tsai JM, et al. (2004) Genomic and proteomic analysis of thirty-nine structural proteins of shrimp white spot syndrome virus. J Virol 78:11360-11370.
5. Vlak JM, et al. (2004) Nimaviridae (VIIIth Report of the International Committee on Taxonomy of Viruses), eds Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (Elsevier, Amsterdam), pp 187.
6. Wang HC, Wang HC, Kou GH, Lo CF, Huang WP (2007) Identification of icp11, the most highly expressed gene of shrimp white spot syndrome virus (WSSV). Dis Aquat Organ 74:179-189.
7. Wang HC, et al. (2007) Protein expression profiling of the shrimp cellular response to white spot syndrome virus infection. Dev Comp Immunol 31:672-686.
8. Nicholls A, Honig B (1992) GRASP: A Manual (Columbia Univ Press, New York, NY), 1st Ed.
9. Liu Y, Wu J, Song J, Sivaraman J, Hew CL (2006) Identification of a novel nonstructural protein, VP9, from white spot syndrome virus: Its structure reveals a ferredoxin fold with specific metal binding sites. J Virol 80:10419-10427.
10. Gao YG, et al. (1998) The crystal structure of the hyperthermophile chromosomal Protein Sso7d bound to DNA. Nat Struct Biol 5:782-786.
11. Dryden DT (2006) DNA mimicry by proteins and the control of enzymatic activity on DNA. Trends Biotechnol 4:378-382.
12. Putnam CD, Tainer JA (2005) Protein mimicry of DNA and pathway regulation. DNA Repair 4:1410-1420.
13. Walkinshaw MD, et al. (2002) Structure of Ocr from bacteriophage T7, a protein that mimics B-form DNA. Mol Cell 9:187-194.
14. Parsons LM, Yeh DC, Orban J (2004) Solution structure of the highly acidic protein HI1450 from Haemophilus influenzae, a putative double-stranded DNA mimic. Proteins 54:375-383.
15. Parsons LM, Liu F, Orban J (2005) HU-alpha binds to the putative double-stranded DNA mimic HI1450 from Haemophilus influenzae. Protein Sci 14:1684-1687.
16. Fillingham J, Keogh MC, Krogan NJ (2006) GammaH2AX and its role in DNA double-strand break repair. Biochem Cell Biol 84:568-577.
17. Fernandez-Capetillo O, Lee A, Nussenzweig M, Nussenzweig A (2004) H2AX: The histone guardian of the genome. DNA Repair 3:959-967.
18. Downs JA, Lowndes NF, Jackson SP (2000) A role for Saccharomyces cerevisiae histone H2A in DNA repair. Nature 408:1001-1004.
19. Foster ER, Downs JA (2005) Histone H2A phosphorylation in DNA double-strand break repair. FEBS J 272:3231-3240.
20. Ren X, Harms JS, Splitter GA (2001) Bovine herpesvirus 1 tegument protein VP22 interacts with histones,andthe carboxyl terminus of VP22 is required for nuclear localization. J Virol 75:8251-8258.
21. Pumfery A, et al. (2003) Chromatin remodeling and modification during HIV-1 Tat-activated transcription. Curr HIV Res 1:343-362.
22. Hamon MA, et al. (2007) Histone modifications induced by a family of bacterial toxins. Proc Natl Acad Sci USA 14:13467-13472.
23. Henikoff S (2008) Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet 9:15-26.
24. Guerrero SA, et al. (2001) Production of selenomethionyl-labelled proteins using simplified culture conditions and generally applicable host/vector systems. Appl Microbiol Biotechnol 56:718-723.
25. Otwinowski Z, Minor W (1997) Processing of X-ray Diffraction Data Collected in Oscillation Mode. Methods in Enzymology: Macromolecular Crystallography, part A, eds Carter CW, Jr, Sweet RM (Academic, New York), Vol 276, pp 307.
26. Terwilliger TC, Berendzen J (1999) Automated MAD and MIR structure solution. Acta Crystallogr 55:849-861.
27. Terwilliger TC (2000) Maximum likelihood density modification. Acta Crystallogr 56:965-972.
28. Brünger AT, et al. (1998) Crystallography & NMR System: A new software suite for structure determination. Acta Crystallogr 54:905-921.
29. Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr 47:110-119.
30. CCP4 (1994) Collaborative Computational Project Number 4. Acta Crystallogr 50:760-763.
31. Barton GJ (1993) Alscript-a tool to format multiple sequence alignments. Protein Eng 6:37-40.
32. Kraulis PJ (1991) MOLSCRIPT: A program to produce both detailed and schematic plots of protein structure. J Appl Crystallogr 24:946-950.
33. Merritt EA, Murphy MEP (1994) Raster3D version 2.0: A program for photorealistic molecular graphics. Acta Crystallogr 50:869-873.
34. Sritunyalucksana K, Wannapapho W, Lo CF, Flegel TW (2006) PmRab7 is a VP28-binding protein involved in white spot syndrome virus infection in shrimp. J Virol 80:10734-10742.
35. Fujitani H, Holoubek V (1974) Recovery of histones by acid extraction from chromatin and from artificial DNA-histone complex. Tex Rep Biol Med 32:461-478.
36. Lin ST, et al. (2002) Ribonucleotide reductase of shrimp white spot syndrome virus (WSSV): Expression and enzymatic activity in a baculovirus/insect cell system and WSSV-infected shrimp. Virology 304:282-290.
37. Hou MH, Wang AHJ (2005) Mithramycin forms a stable dimeric complex by chelating with Fe(II): DNA-interacting characteristics, cellular permeation and cytotoxicity. Nucleic Acids Res 33:1352-1361.