Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat

Theoretical and Applied Genetics

Volumn 118, Issue 3, 2009, Pages 515-524

  Tsilo, Toi J ^a   Chao, Shiaoman ^b   Jin, Yue ^a   Anderson, James A ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b U S DEPARTMENT OF AGRICULTURE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUSTRALIA; BREEDING LINES; BULKED SEGREGANT ANALYSIS; CHINESE SPRING (CS); ETHIOPIA; ISOGENIC LINES; LIGHT INTENSITIES; MAPPING POPULATIONS; MARKER ALLELES; PUCCINIA GRAMINIS; SEEDLING STAGE; SIMPLE SEQUENCE-REPEAT (SSR) MARKERS; SOUTH AFRICA (SA); STEM RUST RESISTANCE; STEM RUST RESISTANCE GENES; WHEAT BREEDING; WHEAT CULTIVARS; WIDE-RANGE;

CHROMOSOMES; FORESTRY; LINGUISTICS; PLANTS (BOTANY); SEMICONDUCTOR RELAYS;

GRAIN (AGRICULTURAL PRODUCT);

MICROSATELLITE DNA;

ARTICLE; BASIDIOMYCETES; CHROMOSOME MAP; GENETIC LINKAGE; GENETIC MARKER; GENETICS; INNATE IMMUNITY; MICROBIOLOGY; PLANT CHROMOSOME; PLANT DISEASE; PLANT GENE; WHEAT;

BASIDIOMYCOTA; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; GENES, PLANT; GENETIC MARKERS; IMMUNITY, INNATE; LINKAGE (GENETICS); MICROSATELLITE REPEATS; PLANT DISEASES; TRITICUM;

PUCCINIA GRAMINIS F. SP. TRITICI; TRITICUM AESTIVUM;

EID: 58549087123     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-008-0917-x     Document Type: Article

References (54)

1. Anderson JA (2003) Plant genomics and its impact on wheat breeding. In: Newbury HJ (ed) Plant molecular breeding. Blackwell, Boca Raton, pp 184-215
2. LE Browder 1985 Parasite:host:environment specificity in the cereal rusts Annu Rev Phytopathol 23 201 222
3. BK Das A Saini SG Bhagwat N Jawali 2007 Development of SCAR markers for identification of stem rust resistance gene Sr31 in the homozygous or heterozygous condition in bread wheat Plant Breed 125 544 549
4. FR Forsyth 1956 Interaction of temperature and light on the seedling reaction of McMurachy wheat to race 15B of stem rust Can J Bot 34 745 749
5. F Gfeller AGO Whiteside 1961 Inheritance of quality as related to agronomic characters in advanced lines of a spring wheat cross Can J Plant Sci 41 604 617
6. GJ Green DR Knott IA Watson AT Pugsley 1960 Seedling reactions to stem rust of lines of Marquis wheat with substituted genes for rust resistance Can J Plant Sci 40 524 538
7. ZB Gulyaeva 1984 Localization of the genes for pubescence of the glumes and coloration of auricles in the leaf sheath in winter wheat variety Ul'yanovka Bull Appl Bot Genet Plant Breed 85 85 86
8. K Gupta S Balyan J Edwards P Isaac V Korzun M Roder MF Gautier P Joudrier R Schlatter J Dubcovsky C De La Pena M Khairallah G Penner J Hayden P Sharp B Keller C Wang P Hardouin P Jack P Leroy 2002 Genetic mapping of 66 new microsatellite (SSR) loci in bread wheat Theor Appl Genet 105 413 422
9. H Guyomarc'h P Sourdille G Charmet KJ Edwards M Bernad 2002 Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theor Appl Genet 104 1164 1172
10. Hart GE, Gale MD, McIntosh RA (1993) Linkage maps of Triticum aestivum (hexaploid wheat, 2n = 42, genomes A, B, and D) and T. tauschii (2n = 14, genome D). In: O'Brien SJ (ed) Genetic maps: Locus maps of complex genomes. Cold Spring Harbor Laboratory Press, New York, pp 204-219
11. M Hayden H Kuchel K Chalmers 2004 Sequence tagged microsatellites for the Xgwm533 locus provide new diagnostic markers to select for the presence of stem rust resistance gene Sr2 in bread wheat (Triticum aestivum L.) Theor Appl Genet 109 1641 1647
12. M Helguera IA Khan J Kolmer D Lijavetzky L Zhong-qi J Dubcovsky 2003 PCR assays for the Lr37-Yr17-Sr38 cluster of rust resistance genes and their use to develop isogenic hard red spring wheat lines Crop Sci 43 1839 1847
13. Y Jin 2005 Races of Puccinia graminis in the United States during 2003 Plant Dis 89 1125 1127
14. Y Jin RP Singh RW Ward R Wanyera M Kinyua P Njau T Fetch ZA Pretorius A Yahyaoui 2007 Characterization of seedling infection types and adult plant infection responses of monogenic Sr gene lines to race TTKS of Puccinia graminis f. sp. tritici Plant Dis 91 1096 1099
15. DR Knott 1957 The inheritance of rust resistance: II. The inheritance of stem rust resistance in six additional varieties of common wheat Can J Plant Sci 37 177 192
16. DR Knott 1981 The effects of genotype and temperature on the resistance to Puccinia graminis tritici controlled by the gene Sr6 in Triticum aestivum Can J Genet Cytol 23 183 190
17. Knott DR (1989) The wheat rusts: breeding for resistance. Springer, Berlin
18. DR Knott 1990 Near-isogenic lines of wheat carrying genes for stem rust resistance Crop Sci 30 901 905
19. DR Knott 2001 Anomalous segregations at the Sr6 locus for stem rust resistance in wheat Theor Appl Genet 103 171 177
20. DR Knott AC Zeven 1987 A test for linkage between Sr6 and Ra in Wheat Euphytica 36 221 224
21. DD Kosambi 1944 The estimation of map distances from recombination values Ann Eugen 12 172 175
22. ES Lander P Green J Abrahamson A Barlow MJ Daly SE Lincoln L Newburg 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations Genomics 1 174 181
23. S Liu X Zhang MO Pumphrey RW Stack BS Gill JA Anderson 2006 Complex microcolinearity among wheat, rice, and barley revealed by fine mapping of the genomic region harboring a major QTL for resistance to Fusarium head blight in wheat Funct Integr Genomics 6 83 89
24. WQ Loegering 1966 The relationship between host and pathogen in stem rust of wheat Hereditas 2 167 177
25. WQ Loegering DL Harmon 1969 Wheat lines near-isogenic for reaction to Puccinia graminis tritici Phytopathology 59 456 460
26. Leonard KJ (2001) Stem rust-future enemy? In: Peterson PD (ed) Stem rust of wheat: from ancient enemy to modern foe. APS Press, St. Paul, pp 119-146
27. NH Luig S Rajaram 1972 The effect of temperature and genetic background on host gene expression and interaction to Puccinia graminis tritici Phytopathology 62 1171 1174
28. R Mago HS Bariana IS Dundas W Spielmeyer GJ Lawrence AJ Pryor JG Ellis 2005 Development of PCR markers for the selection of wheat stem rust resistance genes Sr24 and Sr26 in diverse wheat germplasm Theor Appl Genet 111 496 504
29. McIntosh RA, Baker EP (1968) A linkage map for chromosome 2D. In: Proc 3rd Int Wheat Genet Symp, pp 305-309
30. McIntosh RA, Yamazaki Y, Devos KM, Dubcovsky J, Rogers J, Appels R (2003) Catalogue of gene symbols. http://wheat.pw.usda.gov/ggpages/wgc/2003/. Cited 01 September 2008
31. McIntosh RA, Wellings CR, Park RF (1995) Wheat rusts: an atlas of resistance genes. CSIRO Press, Victoria
32. DV McVey DL Long JJ Roberts 2002 Races of Puccinia graminis in the United States during 1997 and 1998 Plant Dis 86 568 572
33. AE Melchinger 1990 Use of molecular markers in breeding for oligogenic disease resistance Plant Breed 104 1 19
34. RW Michelmore I Paran RV Kesseli 1991 Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations Proc Natl Acad Sci USA 88 9828 9832
35. M Mohan S Nai A Bhagwat TG Krishna M Yano CR Bhatia T Sasaki 1997 Genome mapping, molecular markers and marker-assisted selection in crop plants Mol Breed 3 87 103
36. WL Pederson S Leath 1988 Pyramiding major genes for resistance to maintain residual effects Annu Rev Phytopathol 26 369 378
37. E Pestsova MW Ganal MS Röder 2000 Isolation and mapping of microsatellite markers specific for the D genome of bread wheat Genome 43 689 697
38. CR Riede JA Anderson 1996 Linkage of RFLP markers to an aluminum tolerance gene in wheat Crop Sci 36 905 909
39. MS Röder V Korzun K Wendehake J Plaschke MH Tixier P Leroy MW Ganal 1998 A microsatellite map of wheat Genetics 149 2007 2023
40. Roelfs AP (1988a) Resistance to leaf rust and stem rust in wheat. In: Simmonds NW, Rajaram S (eds) Breeding strategies for resistance to the rusts of wheat. CIMMYT, Mexico, pp 10-22
41. AP Roelfs 1988 Genetic control of phenotypes in wheat Stem rust Annu Rev Phytopathol 26 351 367
42. AP Roelfs JW Martens 1988 An international system of nomenclature for Puccinia graminis f. sp. tritici Phytopathology 78 526 533
43. AP Roelfs DL Long JJ Roberts 1993 Races of Puccinia graminis in the United States during 1990 Plant Dis 77 125 128
44. ER Sears 1954 The aneuploids of common wheat Univ Mo Agric Exp Stn Res Bull 572 2 59
45. ER Sears WQ Loegering HA Rodenhiser 1957 Identification of chromosomes carrying genes for stem rust resistance in four varieties of wheat Agron J 49 208 212
46. Singh RP, Hodson DP, Jin Y, Huerta-Espino J, Kinyua MG, Wanyera R, Njau P, Ward RW (2006) Current status, likely migration and strategies to mitigate the threat to wheat production from race Ug99 (TTKS) of stem rust pathogen. CABI Review. doi: 10.1079/PAVSNNR20061054. http://www.cababstractsplus.org/ cabreviews/. Cited 01 Sep 2008
47. DJ Somers P Isaac K Edwards 2004 A high-density microsatellite consensus map for bread wheat (Triticum aestivum L) Theor Appl Genet 109 1105 1114
48. QJ Song JR Shi S Singh EW Fickus JM Costa J Lewis BS Gill R Ward PB Cregan 2005 Development and mapping of microsatellite (SSR) markers in wheat Theor Appl Genet 110 550 560
49. P Sourdille S Singh T Cadalen GL Brown-Guedira G Gay L Qi BS Gill P Dufour A Murigneux M Bernard 2004 Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.) Funct Integr Genomics 4 12 25
50. Stakman EC, Stewart DM, Loegering WQ (1962) Identification of physiological races of Puccinia graminis var. tritici. United States Department of Agriculture, Agricultural Research Service E-617
51. TJ Tsilo Y Jin JA Anderson 2007 Microsatellite markers linked to stem rust resistance allele Sr9a in wheat Crop Sci 47 2013 2020
52. TJ Tsilo Y Jin JA Anderson 2008 Diagnostic microsatellite markers for the detection of stem rust resistance gene Sr36 in diverse genetic backgrounds of wheat Crop Sci 48 253 261
53. HC Wiggin 1955 Monosomic analysis of stem rust reaction and awn expression in Kentana 52 wheat J Hered 46 239 242
54. AC Zeven 1985 The genetics of auricle color of wheat (Triticum aestivum L.): a review Euphytica 34 233 236