-
2
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
Apic G, Gough J, Teichmann SA. 2001. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J Mol Biol, 310:311-25.
-
(2001)
J Mol Biol
, vol.310
, pp. 311-325
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
3
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408:796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
4
-
-
14544283723
-
Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data
-
Arisue N, Hasegawa M, Hashimoto T. 2005. Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data. Mol Biol Evol, 22:409-20.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 409-420
-
-
Arisue, N.1
Hasegawa, M.2
Hashimoto, T.3
-
5
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
AAAI Press, Menlo Park, CA
-
Bailey TL, Elkan C. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA, pp. 28-36.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
6
-
-
0031877016
-
Combining evidence using p-values: application to sequence homology searches
-
Bailey TL, Gribskov M. 1998. Combining evidence using p-values: application to sequence homology searches. Bioinformatics, 14:48-54.
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
7
-
-
0242330123
-
Structural basis of Aurora-A activation by TPX2 at the mitotic spindle
-
Bayliss R, Sardon T, Vernos I, et al. 2003. Structural basis of Aurora-A activation by TPX2 at the mitotic spindle. Mol Cell, 12:851-62.
-
(2003)
Mol Cell
, vol.12
, pp. 851-862
-
-
Bayliss, R.1
Sardon, T.2
Vernos, I.3
-
8
-
-
0033625531
-
TeXshade: shading and labeling of multiple sequence alignments using LaTeX2e
-
Beitz E. 2000. TeXshade: shading and labeling of multiple sequence alignments using LaTeX2e. Bioinformatics, 16:135-9.
-
(2000)
Bioinformatics
, vol.16
, pp. 135-139
-
-
Beitz, E.1
-
9
-
-
2542542256
-
Ultraconserved elements in the human genome
-
Bejerano G, Pheasant M, Makunin I, et al. 2004. Ultraconserved elements in the human genome. Science, 304:1321-5.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
-
10
-
-
0037270595
-
Maximum likelihood methods for detecting adaptive evolution after gene duplication
-
Bielawski JP, Yang Z. 2003. Maximum likelihood methods for detecting adaptive evolution after gene duplication. J Struct Func Genomics, 3:201-12.
-
(2003)
J Struct Func Genomics
, vol.3
, pp. 201-212
-
-
Bielawski, J.P.1
Yang, Z.2
-
11
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney E, Stamatoyannopoulos JA, Dutta A, et al. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447:799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
-
12
-
-
9444297932
-
Characterization of the TPX2 domains involved in microtubule nucleation and spindle assembly in Xenopus egg extracts
-
Brunet S, Sardon T, Zimmerman T, et al. 2004. Characterization of the TPX2 domains involved in microtubule nucleation and spindle assembly in Xenopus egg extracts. Mol Biol Cell, 15:5318-28.
-
(2004)
Mol Biol Cell
, vol.15
, pp. 5318-5328
-
-
Brunet, S.1
Sardon, T.2
Zimmerman, T.3
-
13
-
-
0036009925
-
Understanding the role of the cytoskeleton in wood formation in angiosperm trees: hybrid aspen (Populus tremula × P. tremuloides) as the model species
-
Chaffey N, Barlow P, Sundberg B. 2002. Understanding the role of the cytoskeleton in wood formation in angiosperm trees: hybrid aspen (Populus tremula × P. tremuloides) as the model species. Tree Physiol, 22:239-49.
-
(2002)
Tree Physiol
, vol.22
, pp. 239-249
-
-
Chaffey, N.1
Barlow, P.2
Sundberg, B.3
-
14
-
-
0032909566
-
A cytoskeletal basis for wood formation in angiosperm trees: the involvement of cortical microtubules
-
Chaffey N, Barnett J, Barlow P. 1999. A cytoskeletal basis for wood formation in angiosperm trees: the involvement of cortical microtubules. Planta, 208:19-30.
-
(1999)
Planta
, vol.208
, pp. 19-30
-
-
Chaffey, N.1
Barnett, J.2
Barlow, P.3
-
15
-
-
0030934773
-
Cortical microtubule involvement in bordered pit formation in secondary xylem vessel elements of Aesculus hippocastanum L (Hippocastanaceae): A correlative study using electron microscopy and indirect immunofluorescence microscopy
-
Chaffey NJ, Barnett JR, Barlow PW. 1997. Cortical microtubule involvement in bordered pit formation in secondary xylem vessel elements of Aesculus hippocastanum L (Hippocastanaceae): A correlative study using electron microscopy and indirect immunofluorescence microscopy. Protoplasma, 197:64-75.
-
(1997)
Protoplasma
, vol.197
, pp. 64-75
-
-
Chaffey, N.J.1
Barnett, J.R.2
Barlow, P.W.3
-
16
-
-
33644700003
-
Toward automatic reconstruction of a highly resolved tree of life
-
Ciccarelli FD, Doerks T, von Mering C, et al. 2006. Toward automatic reconstruction of a highly resolved tree of life. Science, 311:1283-7.
-
(2006)
Science
, vol.311
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
von Mering, C.3
-
17
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR. 1998. Profile hidden Markov models. Bioinformatics, 14:755-63.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
18
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res, 32:1792-7.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
19
-
-
0032787618
-
A comparison of sequence and structure protein domain families as a basis for structural genomics
-
Elofsson A, Sonnhammer ELL. 1999. A comparison of sequence and structure protein domain families as a basis for structural genomics. Bioinformatics, 15:480-500.
-
(1999)
Bioinformatics
, vol.15
, pp. 480-500
-
-
Elofsson, A.1
Sonnhammer, E.L.L.2
-
20
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
Fitch WM. 1970. Distinguishing homologous from analogous proteins. Syst Zool, 19:99-113.
-
(1970)
Syst Zool
, vol.19
, pp. 99-113
-
-
Fitch, W.M.1
-
21
-
-
0038615206
-
Involvement of localized cortical microtubules in the formation of a modified structure of wood
-
Funada R, Miura H, Shibagaki M, et al. 2001. Involvement of localized cortical microtubules in the formation of a modified structure of wood. J Plant Res, 114:491-7.
-
(2001)
J Plant Res
, vol.114
, pp. 491-497
-
-
Funada, R.1
Miura, H.2
Shibagaki, M.3
-
22
-
-
0042972780
-
Control of cellulose synthase complex localization in developing xylem
-
Gardiner JC, Taylor NG, Turner SR. 2003. Control of cellulose synthase complex localization in developing xylem. Plant Cell, 15:1740-8.
-
(2003)
Plant Cell
, vol.15
, pp. 1740-1748
-
-
Gardiner, J.C.1
Taylor, N.G.2
Turner, S.R.3
-
23
-
-
0028038671
-
Microtubule components of the plant-cell cytoskeleton
-
Goddard RH, Wick SM, Silflow CD, et al. 1994. Microtubule components of the plant-cell cytoskeleton. Plant Physiol, 104:1-6.
-
(1994)
Plant Physiol
, vol.104
, pp. 1-6
-
-
Goddard, R.H.1
Wick, S.M.2
Silflow, C.D.3
-
24
-
-
23244466422
-
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) (April, pg 92, 2002)
-
Goff SA. 2005. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) (April, pg 92, 2002). Science, 309:879.
-
(2005)
Science
, vol.309
, pp. 879
-
-
Goff, S.A.1
-
25
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp japonica)
-
Goff SA, Ricke D, Lan TH, et al. 2002. A draft sequence of the rice genome (Oryza sativa L. ssp japonica). Science, 296:92-100.
-
(2002)
Science
, vol.296
, pp. 92-100
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.H.3
-
26
-
-
0038162330
-
Colocalization of cortical microtubules and F-actin in Dipodascus magnusii using confocal laser scanning microscopy
-
Hasek J, Trachtulcova P, Kohlwein SD, et al. 2003. Colocalization of cortical microtubules and F-actin in Dipodascus magnusii using confocal laser scanning microscopy. Folia Microbiol, 48:177-82.
-
(2003)
Folia Microbiol
, vol.48
, pp. 177-182
-
-
Hasek, J.1
Trachtulcova, P.2
Kohlwein, S.D.3
-
27
-
-
0032918558
-
Plant cis-acting regulatory DNA elements (PLACE) database: 1999
-
Higo K, Ugawa Y, Iwamoto M, et al. 1999. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res, 27:297-300.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 297-300
-
-
Higo, K.1
Ugawa, Y.2
Iwamoto, M.3
-
28
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang XQ, Madan A. 1999. CAP3: A DNA sequence assembly program. Genome Res, 9:868-77.
-
(1999)
Genome Res
, vol.9
, pp. 868-877
-
-
Huang, X.Q.1
Madan, A.2
-
29
-
-
0032884653
-
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
-
Jareborg N, Birney E, Durbin R. 1999. Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res, 9:815-24.
-
(1999)
Genome Res
, vol.9
, pp. 815-824
-
-
Jareborg, N.1
Birney, E.2
Durbin, R.3
-
30
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, et al. 2005. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res, 33:511-8.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
-
31
-
-
0037100671
-
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K, Misawa K, Kuma K, et al. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res, 30:3059-66.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
-
32
-
-
34447542906
-
AtMAP70-5, a divergent member of the MAP70 family of microtubule-associated proteins, is required for anisotropic cell growth in Arabidopsis
-
Korolev AV, Buschmann H, Doonan JH, et al. 2007. AtMAP70-5, a divergent member of the MAP70 family of microtubule-associated proteins, is required for anisotropic cell growth in Arabidopsis. J Cell Sci, 120:2241-7.
-
(2007)
J Cell Sci
, vol.120
, pp. 2241-2247
-
-
Korolev, A.V.1
Buschmann, H.2
Doonan, J.H.3
-
33
-
-
29244447181
-
Kalign - an accurate and fast multiple sequence alignment algorithm
-
Lassmann T, Sonnhammer ELL. 2005. Kalign - an accurate and fast multiple sequence alignment algorithm. BMC Bioinfo, 6:298.
-
(2005)
BMC Bioinfo
, vol.6
, pp. 298
-
-
Lassmann, T.1
Sonnhammer, E.L.L.2
-
34
-
-
1842816664
-
Plant cytoskeleton: Reinforcing lines of division in plant cells
-
Mathur J. 2004. Plant cytoskeleton: Reinforcing lines of division in plant cells. Curr Biol, 14:R287-9.
-
(2004)
Curr Biol
, vol.14
-
-
Mathur, J.1
-
35
-
-
20444438444
-
Regulation of secondary cell wall development by cortical microtubules during tracheary element differentiation in Arabidopsis cell suspensions
-
Oda Y, Mimura T, Hasezawa S. 2005. Regulation of secondary cell wall development by cortical microtubules during tracheary element differentiation in Arabidopsis cell suspensions. Plant Physiol, 137:1027-36.
-
(2005)
Plant Physiol
, vol.137
, pp. 1027-1036
-
-
Oda, Y.1
Mimura, T.2
Hasezawa, S.3
-
36
-
-
33646907417
-
AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks
-
Palaniswamy SK, James S, Sun H, et al. 2006. AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol, 140:818-29.
-
(2006)
Plant Physiol
, vol.140
, pp. 818-829
-
-
Palaniswamy, S.K.1
James, S.2
Sun, H.3
-
37
-
-
33749555581
-
Microtubule cortical array organization and plant cell morphogenesis
-
Paradez A, Wright A, Ehrhardt DW. 2006. Microtubule cortical array organization and plant cell morphogenesis. Curr Opin Plant Biol, 9:571-8.
-
(2006)
Curr Opin Plant Biol
, vol.9
, pp. 571-578
-
-
Paradez, A.1
Wright, A.2
Ehrhardt, D.W.3
-
38
-
-
33750173564
-
Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon
-
Paterson AH, Chapman BA, Kissinger JC, et al. 2006. Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon. Trends Genetics, 22:597-602.
-
(2006)
Trends Genetics
, vol.22
, pp. 597-602
-
-
Paterson, A.H.1
Chapman, B.A.2
Kissinger, J.C.3
-
39
-
-
33847410151
-
WVD2 is a novel microtubule-associated protein in Arabidopsis thaliana
-
Perrin RM, Wang Y, Yuen CYL, et al. 2007. WVD2 is a novel microtubule-associated protein in Arabidopsis thaliana. Plant J, 49:961-71.
-
(2007)
Plant J
, vol.49
, pp. 961-971
-
-
Perrin, R.M.1
Wang, Y.2
Yuen, C.Y.L.3
-
40
-
-
12844266799
-
Mutations of tubulin glycylation sites reveal cross-talk between the C termini of alpha-and beta-tubulin and affect the ciliary matrix in Tetrahymena
-
Redeker V, Levilliers N, Vinolo E, et al. 2005. Mutations of tubulin glycylation sites reveal cross-talk between the C termini of alpha-and beta-tubulin and affect the ciliary matrix in Tetrahymena. J Biol Chem, 280:596-606.
-
(2005)
J Biol Chem
, vol.280
, pp. 596-606
-
-
Redeker, V.1
Levilliers, N.2
Vinolo, E.3
-
41
-
-
12444283808
-
Roles of microtubules and cellulose microfibril assembly in the localization of secondary-cell-wall deposition in developing tracheary elements
-
Roberts AW, Frost AO, Roberts EM, et al. 2004. Roles of microtubules and cellulose microfibril assembly in the localization of secondary-cell-wall deposition in developing tracheary elements. Protoplasma, 224:217-29.
-
(2004)
Protoplasma
, vol.224
, pp. 217-229
-
-
Roberts, A.W.1
Frost, A.O.2
Roberts, E.M.3
-
42
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19:1572-4.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
43
-
-
0033399391
-
Herbicides that inhibit cellulose biosynthesis
-
Sabba RP, Vaughn KC. 1999. Herbicides that inhibit cellulose biosynthesis. Weed Sci, 47:757-63.
-
(1999)
Weed Sci
, vol.47
, pp. 757-763
-
-
Sabba, R.P.1
Vaughn, K.C.2
-
44
-
-
22144473057
-
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes
-
Sandelin A, Bailey P, Bruce S, et al. 2004. Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. BMC Genomics, 5:99.
-
(2004)
BMC Genomics
, vol.5
, pp. 99
-
-
Sandelin, A.1
Bailey, P.2
Bruce, S.3
-
45
-
-
6044230998
-
MAPs in plant cells: delineating microtubule growth dynamics and organization
-
Sedbrook JC. 2004. MAPs in plant cells: delineating microtubule growth dynamics and organization. Curr Opin Plant Biol, 7:632-40.
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 632-640
-
-
Sedbrook, J.C.1
-
46
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater GS, Birney E. 2005. Automated generation of heuristics for biological sequence comparison. BMC Bioinfo, 6:31.
-
(2005)
BMC Bioinfo
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
47
-
-
0042622334
-
PromH: promoters identification using orthologous genomic sequences
-
Solovyev VV, Shahmuradov IA. 2003. PromH: promoters identification using orthologous genomic sequences. Nucleic Acids Res, 31:3540-5.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3540-3545
-
-
Solovyev, V.V.1
Shahmuradov, I.A.2
-
48
-
-
33748760611
-
The genome of black cottonwood. Populus trichocarpa (Torr and Gray)
-
Tuskan GA, DiFazio S, Jansson S, et al. 2006. The genome of black cottonwood, Populus trichocarpa (Torr and Gray). Science, 313:1596-604.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
DiFazio, S.2
Jansson, S.3
-
49
-
-
1842578478
-
The cytoskeleton of animals and higher plants: The comparison of structure and functions
-
Vassilyev AE. 1996. The cytoskeleton of animals and higher plants: The comparison of structure and functions. Zhurnal Obshchei Biol, 57:293-325.
-
(1996)
Zhurnal Obshchei Biol
, vol.57
, pp. 293-325
-
-
Vassilyev, A.E.1
-
50
-
-
1842861592
-
Structure, function and evolution of multidomain proteins
-
Vogel C, Bashton M, Kerrison ND, et al. 2004. Structure, function and evolution of multidomain proteins. Curr Opin Struct Biol, 14:208-16.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 208-216
-
-
Vogel, C.1
Bashton, M.2
Kerrison, N.D.3
-
51
-
-
34548501747
-
Natural history and evolutionary principles of gene duplication in fungi
-
Wapinski I, Pfeffer A, Friedman N, et al. 2007. Natural history and evolutionary principles of gene duplication in fungi. Nature, 449:54-61.
-
(2007)
Nature
, vol.449
, pp. 54-61
-
-
Wapinski, I.1
Pfeffer, A.2
Friedman, N.3
-
52
-
-
14744267175
-
New views on the plant cytoskeleton
-
Wasteneys GO, Yang YB. 2004. New views on the plant cytoskeleton. Plant Physiol, 136:3884-91.
-
(2004)
Plant Physiol
, vol.136
, pp. 3884-3891
-
-
Wasteneys, G.O.1
Yang, Y.B.2
-
53
-
-
33644907773
-
Evolution of circular permutations in multidomain proteins
-
Weiner J, Bornberg-Bauer E. 2006. Evolution of circular permutations in multidomain proteins. Mol Biol Evol, 23:734-43.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 734-743
-
-
Weiner, J.1
Bornberg-Bauer, E.2
-
54
-
-
0034717818
-
TPX2, a novel Xenopus MAP involved in spindle pole organization
-
Wittmann T, Wilm M, Karsenti E, et al. 2000. TPX2, a novel Xenopus MAP involved in spindle pole organization. J Cell Biol, 149:1405-18.
-
(2000)
J Cell Biol
, vol.149
, pp. 1405-1418
-
-
Wittmann, T.1
Wilm, M.2
Karsenti, E.3
-
55
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci, 13:555-6.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
56
-
-
0348087043
-
WVD2 and WDL1 modulate helical organ growth and anisotropic cell expansion in Arabidopsis
-
Yuen CYL, Pearlman RS, Silo-Suh L, et al. 2003. WVD2 and WDL1 modulate helical organ growth and anisotropic cell expansion in Arabidopsis. Plant Physiol, 131:493-506.
-
(2003)
Plant Physiol
, vol.131
, pp. 493-506
-
-
Yuen, C.Y.L.1
Pearlman, R.S.2
Silo-Suh, L.3
|