메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

Mononucleotide repeats are asymmetrically distributed in fungal genes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANDIDA; COCCIDIOIDES; FUNGAL GENETICS; GENE SEQUENCE; GENOME; MONONUCLEOTIDE REPEAT; NONHUMAN; NUCLEOTIDE REPEAT; PROKARYOTE; SPECIES DIFFERENCE; TRINUCLEOTIDE REPEAT; DNA SEQUENCE; FUNGAL GENE; FUNGAL GENOME; FUNGUS; GENETICS; MOLECULAR EVOLUTION;

EID: 58249117763     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-596     Document Type: Article
Times cited : (4)

References (28)
  • 1
    • 0029038068 scopus 로고
    • Frequency and distribution of DNA uptake signal sequences in the Haemophilus influenzae Rd genome
    • 10.1126/science.7542802 7542802
    • Smith HO Tomb JF Dougherty BA Fleischmann RD Venter JC Frequency and distribution of DNA uptake signal sequences in the Haemophilus influenzae Rd genome Science 1995, 269(5223):538-540. 10.1126/ science.7542802 7542802
    • (1995) Science , vol.269 , Issue.5223 , pp. 538-540
    • Smith, H.O.1    Tomb, J.F.2    Dougherty, B.A.3    Fleischmann, R.D.4    Venter, J.C.5
  • 2
    • 0242490943 scopus 로고    scopus 로고
    • Lateral gene transfer: When will adolescence end?
    • 10.1046/j.1365-2958.2003.03778.x 14617137
    • Lawrence JG Hendrickson H Lateral gene transfer: When will adolescence end? Mol Microbiol 2003, 50(3):739-749. 10.1046/j.1365-2958.2003.03778.x 14617137
    • (2003) Mol Microbiol , vol.50 , Issue.3 , pp. 739-749
    • Lawrence, J.G.1    Hendrickson, H.2
  • 3
    • 25144518786 scopus 로고    scopus 로고
    • Genome evolution in bacteria: Order beneath chaos
    • 10.1016/j.mib.2005.08.005 16122972
    • Lawrence JG Hendrickson H Genome evolution in bacteria: Order beneath chaos Curr Opin Microbiol 2005, 8(5):572-578. 10.1016/j.mib.2005.08.005 16122972
    • (2005) Curr Opin Microbiol , vol.8 , Issue.5 , pp. 572-578
    • Lawrence, J.G.1    Hendrickson, H.2
  • 4
    • 0032426005 scopus 로고    scopus 로고
    • Comparative DNA analysis across diverse genomes
    • 10.1146/annurev.genet.32.1.185 9928479
    • Karlin S Campbell AM Mrazek J Comparative DNA analysis across diverse genomes Annu Rev Genet 1998, 32:185-225. 10.1146/annurev.genet.32.1.185 9928479
    • (1998) Annu Rev Genet , vol.32 , pp. 185-225
    • Karlin, S.1    Campbell, A.M.2    Mrazek, J.3
  • 5
    • 0035049521 scopus 로고    scopus 로고
    • Genome-scale compositional comparisons in eukaryotes
    • 311039 11282969 10.1101/gr.163101
    • Gentles AJ Karlin S Genome-scale compositional comparisons in eukaryotes Genome Res 2001, 11(4):540-546. 311039 11282969 10.1101/gr.163101
    • (2001) Genome Res , vol.11 , Issue.4 , pp. 540-546
    • Gentles, A.J.1    Karlin, S.2
  • 6
    • 0034565040 scopus 로고    scopus 로고
    • Regulatory element detection using a probabilistic segmentation model
    • 10977067
    • Bussemaker HJ Li H Siggia ED Regulatory element detection using a probabilistic segmentation model Proc Int Conf Intell Syst Mol Biol 2000, 8:67-74. 10977067
    • (2000) Proc Int Conf Intell Syst Mol Biol , vol.8 , pp. 67-74
    • Bussemaker, H.J.1    Li, H.2    Siggia, E.D.3
  • 7
    • 34347209094 scopus 로고    scopus 로고
    • Simple sequence repeats in prokaryotic genomes
    • 1895974 17485665 10.1073/pnas.0702412104
    • Mrazek J Guo X Shah A Simple sequence repeats in prokaryotic genomes Proc Natl Acad Sci U S A 2007, 104(20):8472-8477. 1895974 17485665 10.1073/pnas.0702412104
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.20 , pp. 8472-8477
    • Mrazek, J.1    Guo, X.2    Shah, A.3
  • 9
    • 14544279926 scopus 로고    scopus 로고
    • Survey of simple sequence repeats in completed fungal genomes
    • 10.1093/molbev/msi057 15563717
    • Karaoglu H Lee CM Meyer W Survey of simple sequence repeats in completed fungal genomes Mol Biol Evol 2005, 22(3):639-649. 10.1093/molbev/msi057 15563717
    • (2005) Mol Biol Evol , vol.22 , Issue.3 , pp. 639-649
    • Karaoglu, H.1    Lee, C.M.2    Meyer, W.3
  • 10
    • 33646560923 scopus 로고    scopus 로고
    • Characterization of mononucleotide repeats in sequenced prokaryotic genomes
    • 10.1093/dnares/dsi009 16769685
    • Coenye T Vandamme P Characterization of mononucleotide repeats in sequenced prokaryotic genomes DNA Res 2005, 12(4):221-233. 10.1093/ dnares/dsi009 16769685
    • (2005) DNA Res , vol.12 , Issue.4 , pp. 221-233
    • Coenye, T.1    Vandamme, P.2
  • 11
    • 0029597867 scopus 로고
    • The contribution of slippage-like processes to genome evolution
    • 10.1007/BF00173185 8587102
    • Hancock JM The contribution of slippage-like processes to genome evolution J Mol Evol 1995, 41(6):1038-1047. 10.1007/BF00173185 8587102
    • (1995) J Mol Evol , vol.41 , Issue.6 , pp. 1038-1047
    • Hancock, J.M.1
  • 12
    • 33645763269 scopus 로고    scopus 로고
    • DNA sequences shaped by selection for stability
    • 1378130 16518467 10.1371/journal.pgen.0020022
    • Ackermann M Chao L DNA sequences shaped by selection for stability PLoS Genet 2006, 2(2):e22. 1378130 16518467 10.1371/journal.pgen.0020022
    • (2006) PLoS Genet , vol.2 , Issue.2
    • Ackermann, M.1    Chao, L.2
  • 13
    • 36549056484 scopus 로고    scopus 로고
    • Selection on the genic location of disruptive elements
    • 10.1016/j.tig.2007.08.017 17996324
    • van Passel MW Ochman H Selection on the genic location of disruptive elements Trends Genet 2007, 23(12):601-604. 10.1016/j.tig.2007.08.017 17996324
    • (2007) Trends Genet , vol.23 , Issue.12 , pp. 601-604
    • van Passel, M.W.1    Ochman, H.2
  • 14
    • 58249096948 scopus 로고    scopus 로고
    • NCBI National Center for Biotechnology Information 2008. http://www.ncbi.nlm.nih.gov/genomes/leuks.cgi
    • (2008)
  • 17
    • 54849436208 scopus 로고    scopus 로고
    • The quest for orthologs: Finding the corresponding gene across genomes
    • 10.1016/j.tig.2008.08.009 18819722
    • Kuzniar A van Ham RC Pongor S Leunissen JA The quest for orthologs: finding the corresponding gene across genomes Trends Genet 2008, 24(11):539-551. 10.1016/j.tig.2008.08.009 18819722
    • (2008) Trends Genet , vol.24 , Issue.11 , pp. 539-551
    • Kuzniar, A.1    van Ham, R.C.2    Pongor, S.3    Leunissen, J.A.4
  • 18
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: Survey and analysis
    • 310925 10899146 10.1101/gr.10.7.967
    • Toth G Gaspari Z Jurka J Microsatellites in different eukaryotic genomes: Survey and analysis Genome Res 2000, 10(7):967-981. 310925 10899146 10.1101/gr.10.7.967
    • (2000) Genome Res , vol.10 , Issue.7 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 19
    • 0037693712 scopus 로고    scopus 로고
    • Analysis of microsatellites in 13 hemiascomycetous yeast species: Mechanisms involved in genome dynamics
    • 10.1007/s00239-002-2447-5 12911036
    • Malpertuy A Dujon B Richard GF Analysis of microsatellites in 13 hemiascomycetous yeast species: Mechanisms involved in genome dynamics J Mol Evol 2003, 56(6):730-741. 10.1007/s00239-002-2447-5 12911036
    • (2003) J Mol Evol , vol.56 , Issue.6 , pp. 730-741
    • Malpertuy, A.1    Dujon, B.2    Richard, G.F.3
  • 20
    • 39849087537 scopus 로고    scopus 로고
    • Simple sequence repeats in Neurospora crassa: Distribution, polymorphism and evolutionary inference
    • 2257937 18215294 10.1186/1471-2164-9-31
    • Kim TS Booth JG Gauch HG Jr Sun Q Park J Lee YH Lee K Simple sequence repeats in Neurospora crassa: Distribution, polymorphism and evolutionary inference BMC Genomics 2008, 9:31. 2257937 18215294 10.1186/ 1471-2164-9-31
    • (2008) BMC Genomics , vol.9 , pp. 31
    • Kim, T.S.1    Booth, J.G.2    Gauch Jr., H.G.3    Sun, Q.4    Park, J.5    Lee, Y.H.6    Lee, K.7
  • 21
    • 33845452848 scopus 로고    scopus 로고
    • A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
    • 1679813 17121679 10.1186/1471-2148-6-99
    • Fitzpatrick DA Logue ME Stajich JE Butler G A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis BMC Evol Biol 2006, 6:99. 1679813 17121679 10.1186/1471-2148-6-99
    • (2006) BMC Evol Biol , vol.6 , pp. 99
    • Fitzpatrick, D.A.1    Logue, M.E.2    Stajich, J.E.3    Butler, G.4
  • 22
    • 0037133671 scopus 로고    scopus 로고
    • Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis
    • 122586 11904428 10.1073/pnas.062526999
    • Akashi H Gojobori T Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis Proc Natl Acad Sci USA 2002, 99(6):3695-3700. 122586 11904428 10.1073/pnas.062526999
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.6 , pp. 3695-3700
    • Akashi, H.1    Gojobori, T.2
  • 23
    • 37549010337 scopus 로고    scopus 로고
    • Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species
    • 10.1093/molbev/msm129 17602168
    • Huntley MA Clark AG Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species Mol Biol Evol 2007, 24(12):2598-2609. 10.1093/molbev/msm129 17602168
    • (2007) Mol Biol Evol , vol.24 , Issue.12 , pp. 2598-2609
    • Huntley, M.A.1    Clark, A.G.2
  • 24
    • 34250878426 scopus 로고    scopus 로고
    • Expandable DNA repeats and human disease
    • 10.1038/nature05977 17581576
    • Mirkin SM Expandable DNA repeats and human disease Nature 2007, 447(7147):932-940. 10.1038/nature05977 17581576
    • (2007) Nature , vol.447 , Issue.7147 , pp. 932-940
    • Mirkin, S.M.1
  • 25
    • 38049100631 scopus 로고    scopus 로고
    • Features of trinucleotide repeat instability in vivo
    • 10.1038/cr.2008.5 18166978
    • Kovtun IV McMurray CT Features of trinucleotide repeat instability in vivo Cell Res 2008, 18(1):198-213. 10.1038/cr.2008.5 18166978
    • (2008) Cell Res , vol.18 , Issue.1 , pp. 198-213
    • Kovtun, I.V.1    McMurray, C.T.2
  • 26
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • 10.1016/j.tig.2006.03.005 16567018
    • Kashi Y King DG Simple sequence repeats as advantageous mutators in evolution Trends Genet 2006, 22(5):253-259. 10.1016/j.tig.2006.03.005 16567018
    • (2006) Trends Genet , vol.22 , Issue.5 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 27
    • 40549102169 scopus 로고    scopus 로고
    • High frequency of microsatellites in S. cerevisiae meiotic recombination hotspots
    • 2267716 18226240 10.1186/1471-2164-9-49
    • Bagshaw AT Pitt JP Gemmell NJ High frequency of microsatellites in S. cerevisiae meiotic recombination hotspots BMC Genomics 2008, 9:49. 2267716 18226240 10.1186/1471-2164-9-49
    • (2008) BMC Genomics , vol.9 , pp. 49
    • Bagshaw, A.T.1    Pitt, J.P.2    Gemmell, N.J.3
  • 28
    • 42649100674 scopus 로고    scopus 로고
    • An intragenic distribution bias of DNA uptake sequences in Pasteurellaceae and Neisseriae
    • 2346458 18371225 10.1186/1745-6150-3-12
    • van Passel MW An intragenic distribution bias of DNA uptake sequences in Pasteurellaceae and Neisseriae Biol Direct 2008, 3:12. 2346458 18371225 10.1186/1745-6150-3-12
    • (2008) Biol Direct , vol.3 , pp. 12
    • van Passel, M.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.